Wall clock time and date at job start Fri Apr 10 2020 18:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38041 * 126.29247 * 2 1 4 4 C 1.47432 * 126.41133 * 0.02562 * 3 2 1 5 5 O 1.21595 * 120.00231 * 35.25276 * 4 3 2 6 6 N 1.34781 * 119.99655 * 215.25102 * 4 3 2 7 7 C 1.46448 * 126.08013 * 176.00694 * 6 4 3 8 8 C 1.53265 * 113.73240 * 178.29553 * 7 6 4 9 9 H 1.08999 * 110.07763 * 268.30192 * 8 7 6 10 10 C 1.53002 * 110.15204 * 146.67334 * 8 7 6 11 11 C 1.55561 * 106.21108 * 27.46781 * 8 7 6 12 12 S 1.67290 * 126.08666 * 355.96994 * 6 4 3 13 13 O 1.42103 * 105.40728 * 45.25219 * 12 6 4 14 14 O 1.42101 * 105.40574 * 274.99452 * 12 6 4 15 15 C 1.41291 * 107.17159 * 179.76149 * 3 2 1 16 16 N 1.30445 * 108.02400 * 0.24411 * 15 3 2 17 17 N 1.34262 * 126.29364 * 180.18292 * 2 1 3 18 18 C 1.46500 * 125.75376 * 359.95273 * 17 2 1 19 19 C 1.50692 * 109.47299 * 270.31202 * 18 17 2 20 20 H 1.07997 * 120.00430 * 359.97438 * 19 18 17 21 21 C 1.37880 * 120.00262 * 179.97438 * 19 18 17 22 22 N 1.31525 * 119.99541 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 120.00525 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46864 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47581 * 120.00082 * 23 21 19 26 26 H 1.48505 * 109.47379 * 240.00404 * 23 21 19 27 27 H 1.08994 * 109.47356 * 90.00133 * 1 2 3 28 28 H 1.09002 * 109.46475 * 210.00272 * 1 2 3 29 29 H 1.08994 * 109.46840 * 329.99411 * 1 2 3 30 30 H 1.08994 * 108.64861 * 299.35951 * 7 6 4 31 31 H 1.08995 * 108.64688 * 57.31754 * 7 6 4 32 32 H 1.08998 * 109.46769 * 303.19064 * 10 8 7 33 33 H 1.09001 * 109.47226 * 63.19330 * 10 8 7 34 34 H 1.09002 * 109.46834 * 183.19489 * 10 8 7 35 35 H 1.08996 * 111.36830 * 205.45353 * 11 8 7 36 36 H 1.08997 * 111.37059 * 80.70620 * 11 8 7 37 37 H 1.08001 * 125.98465 * 180.23619 * 15 3 2 38 38 H 1.09009 * 109.46695 * 30.31440 * 18 17 2 39 39 H 1.09000 * 109.46873 * 150.30530 * 18 17 2 40 40 H 0.97002 * 119.99690 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 0.0005 5 8 0.8842 2.8450 0.6088 6 7 2.5953 3.4472 -0.6732 7 6 2.2398 4.8592 -0.8304 8 6 3.2727 5.6712 -1.6195 9 1 3.9991 6.1149 -0.9387 10 6 2.5752 6.7648 -2.4310 11 6 3.9788 4.6657 -2.5735 12 16 4.0392 3.1899 -1.4778 13 8 3.8527 1.9883 -2.2132 14 8 5.0509 3.3179 -0.4882 15 6 3.6590 0.6498 0.0056 16 7 3.6341 -0.6544 0.0035 17 7 2.3018 -1.0821 -0.0035 18 6 1.8502 -2.4758 -0.0069 19 6 1.6889 -2.9551 1.4126 20 1 1.9019 -2.2886 2.2352 21 6 1.2695 -4.2448 1.6613 22 7 1.0106 -5.0568 0.6596 23 14 1.0702 -4.8393 3.4209 24 1 1.4225 -3.7417 4.3570 25 1 -0.3386 -5.2500 3.6482 26 1 1.9680 -5.9986 3.6564 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3632 -0.8900 0.5139 29 1 -0.3633 0.8899 0.5139 30 1 1.2813 4.9219 -1.3455 31 1 2.1322 5.3037 0.1589 32 1 1.8319 6.3120 -3.0872 33 1 2.0842 7.4631 -1.7531 34 1 3.3126 7.2983 -3.0308 35 1 4.9802 5.0053 -2.8379 36 1 3.3796 4.4750 -3.4638 37 1 4.5449 1.2676 0.0107 38 1 0.8938 -2.5465 -0.5252 39 1 2.5871 -3.0952 -0.5182 40 1 0.7158 -5.9642 0.8346 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893091098.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:08 Heat of formation + Delta-G solvation = -52.688355 kcal Electronic energy + Delta-G solvation = -26494.931394 eV Core-core repulsion = 22630.882787 eV Total energy + Delta-G solvation = -3864.048607 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.54184 -40.63235 -38.56314 -38.05848 -37.22530 -35.88361 -34.83189 -33.88398 -32.90600 -29.68925 -28.79002 -28.52976 -27.16337 -25.40281 -23.94612 -22.47337 -22.10130 -20.82643 -19.84071 -18.96180 -18.80592 -18.14541 -17.50433 -17.18487 -17.01146 -16.48472 -16.32806 -16.12316 -15.85133 -15.57112 -15.11640 -14.49368 -14.42041 -14.10885 -14.07501 -13.88837 -13.74764 -13.67670 -13.36438 -13.23690 -13.23170 -13.15423 -13.00329 -12.87603 -12.73603 -12.36107 -12.19864 -12.07883 -11.90210 -11.87792 -11.50981 -11.26850 -10.90321 -10.78096 -10.38401 -9.69433 -8.40309 -6.56839 -1.05157 0.46162 1.00928 1.05510 1.35486 1.37121 1.47926 1.58555 1.87659 2.31235 2.39434 2.47262 2.91771 3.05331 3.32965 3.42794 3.52644 3.67910 3.81898 4.01924 4.06231 4.23880 4.31830 4.49538 4.58675 4.59659 4.70123 4.73599 4.78661 4.81801 4.88931 5.05125 5.07333 5.15364 5.26256 5.39837 5.45946 5.47704 5.70707 5.94755 6.50899 6.55040 6.64058 7.14318 8.68188 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.027742 B = 0.003319 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.074698 B = 8434.928570 C = 8811.334296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.163 3.837 3 C -0.351 4.351 4 C 0.651 3.349 5 O -0.525 6.525 6 N -0.925 5.925 7 C 0.054 3.946 8 C -0.089 4.089 9 H 0.126 0.874 10 C -0.135 4.135 11 C -0.535 4.535 12 S 2.510 3.490 13 O -0.969 6.969 14 O -0.971 6.971 15 C 0.065 3.935 16 N -0.322 5.322 17 N -0.330 5.330 18 C 0.265 3.735 19 C -0.559 4.559 20 H 0.051 0.949 21 C 0.026 3.974 22 N -0.914 5.914 23 Si 0.974 3.026 24 H -0.275 1.275 25 H -0.264 1.264 26 H -0.273 1.273 27 H 0.104 0.896 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.187 0.813 36 H 0.175 0.825 37 H 0.186 0.814 38 H 0.061 0.939 39 H 0.033 0.967 40 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.917 26.465 -9.681 28.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.026 3.974 3 C -0.367 4.367 4 C 0.441 3.559 5 O -0.400 6.400 6 N -0.767 5.767 7 C -0.069 4.069 8 C -0.109 4.109 9 H 0.144 0.856 10 C -0.193 4.193 11 C -0.671 4.671 12 S 2.613 3.387 13 O -0.958 6.958 14 O -0.961 6.961 15 C -0.122 4.122 16 N -0.142 5.142 17 N -0.107 5.107 18 C 0.147 3.853 19 C -0.597 4.597 20 H 0.069 0.931 21 C -0.175 4.175 22 N -0.552 5.552 23 Si 0.797 3.203 24 H -0.200 1.200 25 H -0.189 1.189 26 H -0.199 1.199 27 H 0.122 0.878 28 H 0.101 0.899 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.116 0.884 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.205 0.795 36 H 0.193 0.807 37 H 0.202 0.798 38 H 0.079 0.921 39 H 0.051 0.949 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.579 24.292 -9.175 26.095 hybrid contribution -0.441 0.159 0.772 0.903 sum 2.138 24.452 -8.403 25.943 Atomic orbital electron populations 1.20743 0.84358 1.05418 1.04990 1.21932 0.96343 0.85640 0.93436 1.19772 0.93224 0.93159 1.30556 1.16502 0.81332 0.82576 0.75464 1.90664 1.26198 1.81218 1.41915 1.55959 1.41990 1.17004 1.61741 1.22417 1.02513 0.77222 1.04766 1.22237 0.96990 0.95752 0.95968 0.85570 1.21804 1.01279 0.96365 0.99896 1.30832 1.13809 1.11398 1.11051 1.08555 0.73371 0.78988 0.77800 1.93691 1.83971 1.45333 1.72830 1.93632 1.56148 1.87844 1.58457 1.24102 0.96858 0.92892 0.98349 1.77044 0.99070 1.13038 1.24998 1.49216 1.02796 1.08226 1.50424 1.19526 0.95682 0.71592 0.98522 1.21411 1.48227 0.98722 0.91355 0.93100 1.25723 0.93689 0.95747 1.02390 1.70004 1.44644 1.07641 1.32901 0.85272 0.78622 0.78087 0.78283 1.19981 1.18916 1.19852 0.87778 0.89897 0.87764 0.87656 0.88375 0.90997 0.90282 0.89181 0.79546 0.80689 0.79766 0.92123 0.94895 0.91522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.52 9.67 71.24 0.69 -2.83 16 2 C 0.16 7.29 7.00 42.14 0.29 7.58 16 3 C -0.35 -14.96 5.21 -20.15 -0.10 -15.06 16 4 C 0.65 23.15 7.63 86.66 0.66 23.81 16 5 O -0.53 -19.75 15.82 -4.01 -0.06 -19.81 16 6 N -0.92 -23.78 3.35 -466.05 -1.56 -25.35 16 7 C 0.05 0.78 5.98 86.48 0.52 1.30 16 8 C -0.09 -0.55 3.30 -9.82 -0.03 -0.58 16 9 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 10 C -0.14 -0.18 9.07 71.98 0.65 0.47 16 11 C -0.53 -3.66 7.05 72.86 0.51 -3.14 16 12 S 2.51 58.76 4.63 -56.49 -0.26 58.50 16 13 O -0.97 -31.60 15.21 -127.81 -1.94 -33.54 16 14 O -0.97 -27.94 16.59 -127.81 -2.12 -30.06 16 15 C 0.07 2.95 9.22 85.65 0.79 3.74 16 16 N -0.32 -16.55 12.50 -56.27 -0.70 -17.25 16 17 N -0.33 -16.77 3.56 -336.70 -1.20 -17.97 16 18 C 0.26 14.29 5.78 85.63 0.49 14.79 16 19 C -0.56 -31.88 9.39 25.60 0.24 -31.64 16 20 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 21 C 0.03 1.44 5.46 84.65 0.46 1.91 16 22 N -0.91 -51.74 13.29 21.45 0.28 -51.46 16 23 Si 0.97 43.69 29.54 68.60 2.03 45.72 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 25 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 26 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 27 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 28 H 0.08 3.14 7.71 -2.39 -0.02 3.12 16 29 H 0.10 3.55 6.58 -2.39 -0.02 3.54 16 30 H 0.11 1.26 7.71 -2.39 -0.02 1.25 16 31 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 0.08 8.06 -2.39 -0.02 0.06 16 33 H 0.08 0.04 8.14 -2.39 -0.02 0.03 16 34 H 0.09 -0.13 8.14 -2.39 -0.02 -0.15 16 35 H 0.19 0.02 8.14 -2.39 -0.02 0.00 16 36 H 0.18 0.47 8.08 -2.39 -0.02 0.46 16 37 H 0.19 7.53 5.36 -2.91 -0.02 7.52 16 38 H 0.06 3.18 7.64 -2.38 -0.02 3.16 16 39 H 0.03 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.28 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -82.46 344.82 0.70 -81.76 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 1.07 Total: 9.12 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: 5.18 Total: 0.33 kcal Atomic # 7 Polarization: -108.84 SS G_CDS: -3.18 Total: -112.02 kcal Atomic # 8 Polarization: -79.28 SS G_CDS: -4.13 Total: -83.41 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: 58.76 SS G_CDS: -0.26 Total: 58.50 kcal Total: -82.46 0.70 -81.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893091098.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.075 kcal (2) G-P(sol) polarization free energy of solvation -82.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds