Wall clock time and date at job start Fri Apr 10 2020 18:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 C 1.50694 * 120.02852 * 180.02562 * 8 7 6 10 10 N 1.46502 * 109.47607 * 260.00607 * 9 8 7 11 11 C 1.34770 * 119.99838 * 179.97438 * 10 9 8 12 12 O 1.21280 * 120.00482 * 0.02562 * 11 10 9 13 13 C 1.50709 * 119.99912 * 180.02562 * 11 10 9 14 14 S 1.81389 * 109.47182 * 180.02562 * 13 11 10 15 15 O 1.42103 * 108.57900 * 294.48577 * 14 13 11 16 16 O 1.42100 * 108.58272 * 65.51349 * 14 13 11 17 17 C 1.81398 * 101.92004 * 180.02562 * 14 13 11 18 18 C 1.50704 * 109.47401 * 180.02562 * 17 14 13 19 19 H 1.08005 * 119.99890 * 359.97438 * 18 17 14 20 20 C 1.37872 * 120.00519 * 180.02562 * 18 17 14 21 21 N 1.31512 * 120.00501 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99735 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46965 * 90.00285 * 22 20 18 24 24 H 1.48499 * 109.47345 * 210.00426 * 22 20 18 25 25 H 1.48501 * 109.47424 * 330.00451 * 22 20 18 26 26 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 27 27 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 28 28 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 29 29 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 30 30 H 1.07997 * 119.97891 * 180.29657 * 5 4 3 31 31 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 32 32 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 33 33 H 1.09001 * 109.47053 * 20.00832 * 9 8 7 34 34 H 1.09002 * 109.47103 * 140.00310 * 9 8 7 35 35 H 0.97000 * 119.99685 * 0.02562 * 10 9 8 36 36 H 1.08998 * 109.46577 * 300.00173 * 13 11 10 37 37 H 1.08996 * 109.46721 * 59.99979 * 13 11 10 38 38 H 1.09000 * 109.47572 * 299.99955 * 17 14 13 39 39 H 1.08999 * 109.47226 * 60.00002 * 17 14 13 40 40 H 0.97000 * 120.00324 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 3.4311 1.2849 -0.0007 9 6 4.2537 0.0223 -0.0002 10 7 4.3189 -0.5187 -1.3602 11 6 5.0067 -1.6521 -1.6022 12 8 5.5714 -2.2245 -0.6943 13 6 5.0743 -2.2083 -3.0013 14 16 6.0644 -3.7282 -3.0006 15 8 7.4042 -3.3955 -2.6637 16 8 5.3813 -4.7132 -2.2376 17 6 6.0114 -4.2106 -4.7484 18 6 6.7976 -5.4816 -4.9429 19 1 7.2812 -5.9518 -4.0993 20 6 6.9005 -6.0435 -6.1976 21 7 7.5861 -7.1529 -6.3672 22 14 6.0647 -5.2299 -7.6567 23 1 6.9989 -4.2618 -8.2857 24 1 5.6830 -6.2660 -8.6497 25 1 4.8479 -4.5148 -7.1949 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2128 2.3203 -0.0010 30 1 1.3339 4.5114 0.0026 31 1 3.7920 4.6381 -0.0024 32 1 5.1344 2.5754 -0.0023 33 1 5.2613 0.2452 0.3508 34 1 3.7927 -0.7115 0.6610 35 1 3.8676 -0.0607 -2.0864 36 1 4.0669 -2.4315 -3.3525 37 1 5.5352 -1.4743 -3.6622 38 1 4.9766 -4.3745 -5.0490 39 1 6.4454 -3.4177 -5.3575 40 1 7.6582 -7.5484 -7.2500 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905265664.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:21 Heat of formation + Delta-G solvation = -148.695774 kcal Electronic energy + Delta-G solvation = -24974.273146 eV Core-core repulsion = 21073.768593 eV Total energy + Delta-G solvation = -3900.504552 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.102 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.45241 -40.68449 -38.41134 -37.79791 -36.81108 -36.19080 -35.26744 -33.02118 -31.80497 -31.23437 -30.93727 -28.26281 -26.91619 -25.06196 -23.09853 -22.56703 -22.03535 -19.71405 -19.42929 -19.04382 -18.54068 -17.74855 -17.44869 -17.11902 -17.08679 -16.72665 -16.47846 -16.21960 -16.18938 -15.80089 -15.35227 -14.86705 -14.79997 -14.61903 -14.21216 -14.06156 -13.94438 -13.51785 -13.45496 -13.38840 -12.92179 -12.86488 -12.86276 -12.55004 -12.40191 -12.26178 -12.02519 -11.87743 -11.79024 -11.78385 -11.49540 -11.07228 -10.87446 -10.30365 -9.93656 -9.18649 -8.38472 -6.55861 -0.87939 0.21422 0.45108 1.31882 1.38645 1.44271 1.54917 1.92826 2.21100 2.34329 2.35872 2.78817 2.92441 3.07797 3.28124 3.55914 3.59482 3.82416 4.01897 4.04798 4.24882 4.28052 4.32379 4.38791 4.43369 4.44257 4.53858 4.61082 4.64315 4.74008 4.79977 4.99912 5.19984 5.29194 5.33460 5.46056 5.56524 5.82811 5.88677 6.24129 6.42248 6.50249 6.96203 7.10974 8.77827 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.020764 B = 0.002619 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.186260 B =10688.020738 C =10917.577923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.131 3.869 4 C -0.215 4.215 5 C -0.070 4.070 6 C -0.162 4.162 7 C -0.066 4.066 8 C -0.158 4.158 9 C 0.168 3.832 10 N -0.692 5.692 11 C 0.532 3.468 12 O -0.584 6.584 13 C -0.641 4.641 14 S 2.435 3.565 15 O -0.987 6.987 16 O -0.988 6.988 17 C -0.467 4.467 18 C -0.557 4.557 19 H 0.028 0.972 20 C 0.014 3.986 21 N -0.941 5.941 22 Si 0.960 3.040 23 H -0.255 1.255 24 H -0.283 1.283 25 H -0.215 1.215 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.107 0.893 29 H 0.148 0.852 30 H 0.152 0.848 31 H 0.148 0.852 32 H 0.142 0.858 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.420 0.580 36 H 0.206 0.794 37 H 0.209 0.791 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.793 29.327 6.968 36.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.248 6.248 3 C 0.085 3.915 4 C -0.233 4.233 5 C -0.088 4.088 6 C -0.180 4.180 7 C -0.084 4.084 8 C -0.159 4.159 9 C 0.045 3.955 10 N -0.344 5.344 11 C 0.318 3.682 12 O -0.464 6.464 13 C -0.771 4.771 14 S 2.622 3.378 15 O -0.984 6.984 16 O -0.985 6.985 17 C -0.600 4.600 18 C -0.595 4.595 19 H 0.046 0.954 20 C -0.186 4.186 21 N -0.579 5.579 22 Si 0.778 3.222 23 H -0.179 1.179 24 H -0.208 1.208 25 H -0.137 1.137 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.125 0.875 29 H 0.166 0.834 30 H 0.170 0.830 31 H 0.166 0.834 32 H 0.159 0.841 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.258 0.742 36 H 0.223 0.777 37 H 0.226 0.774 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.856 28.200 8.277 34.918 hybrid contribution -0.501 -0.026 -1.150 1.255 sum -19.357 28.174 7.127 34.918 Atomic orbital electron populations 1.23324 0.76511 1.05194 1.02527 1.86133 1.23369 1.27086 1.88256 1.19107 0.91753 0.85106 0.95577 1.21519 1.01171 0.91890 1.08742 1.21397 0.94973 0.97731 0.94738 1.21390 0.94222 0.98950 1.03398 1.21187 1.00991 0.90650 0.95596 1.19135 0.90713 0.94917 1.11140 1.20012 0.99458 0.92599 0.83411 1.45717 1.52349 1.24667 1.11640 1.19708 0.78411 0.81354 0.88718 1.90863 1.47482 1.60587 1.47518 1.30714 1.21046 1.22567 1.02760 1.07339 0.74969 0.76505 0.79007 1.93422 1.36446 1.84701 1.83865 1.93423 1.76301 1.58621 1.70194 1.28087 1.07553 1.05587 1.18739 1.20405 1.34610 1.08171 0.96330 0.95401 1.26227 0.94767 0.94910 1.02665 1.70057 1.41516 1.21191 1.25118 0.85548 0.80992 0.78987 0.76623 1.17888 1.20845 1.13717 0.91473 0.91066 0.87476 0.83411 0.83033 0.83440 0.84052 0.90562 0.92071 0.74247 0.77705 0.77350 0.85878 0.85962 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.33 -5.93 9.73 -92.39 -0.90 -6.83 16 3 C 0.13 2.11 6.66 22.51 0.15 2.26 16 4 C -0.21 -2.41 9.04 22.37 0.20 -2.21 16 5 C -0.07 -0.63 10.04 22.26 0.22 -0.41 16 6 C -0.16 -1.59 10.04 22.28 0.22 -1.36 16 7 C -0.07 -0.86 9.67 22.25 0.22 -0.65 16 8 C -0.16 -2.69 5.26 -19.77 -0.10 -2.80 16 9 C 0.17 3.75 5.46 85.63 0.47 4.21 16 10 N -0.69 -15.06 5.55 -466.79 -2.59 -17.65 16 11 C 0.53 16.29 7.85 87.66 0.69 16.97 16 12 O -0.58 -24.84 15.62 -0.16 0.00 -24.85 16 13 C -0.64 -15.50 6.29 71.24 0.45 -15.05 16 14 S 2.44 103.28 3.88 -56.49 -0.22 103.06 16 15 O -0.99 -50.62 17.94 -125.74 -2.26 -52.87 16 16 O -0.99 -51.02 17.95 -125.76 -2.26 -53.27 16 17 C -0.47 -19.43 4.63 71.24 0.33 -19.10 16 18 C -0.56 -32.50 9.68 25.60 0.25 -32.26 16 19 H 0.03 1.89 7.96 -2.91 -0.02 1.87 16 20 C 0.01 0.82 5.47 84.65 0.46 1.28 16 21 N -0.94 -58.92 13.96 21.45 0.30 -58.62 16 22 Si 0.96 39.40 27.47 68.60 1.88 41.29 16 23 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 24 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 25 H -0.22 -7.15 6.54 99.48 0.65 -6.50 16 26 H 0.07 0.47 7.66 -2.39 -0.02 0.45 16 27 H 0.07 0.44 7.66 -2.39 -0.02 0.43 16 28 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.15 1.01 6.30 -2.91 -0.02 0.99 16 30 H 0.15 0.53 8.06 -2.91 -0.02 0.51 16 31 H 0.15 0.79 8.06 -2.91 -0.02 0.76 16 32 H 0.14 1.52 8.04 -2.91 -0.02 1.49 16 33 H 0.08 1.73 8.00 -2.39 -0.02 1.71 16 34 H 0.06 1.63 7.85 -2.39 -0.02 1.61 16 35 H 0.42 6.10 8.46 -92.71 -0.78 5.31 16 36 H 0.21 2.97 8.14 -2.39 -0.02 2.95 16 37 H 0.21 2.86 8.14 -2.39 -0.02 2.84 16 38 H 0.12 4.20 7.20 -2.39 -0.02 4.19 16 39 H 0.12 4.10 7.57 -2.39 -0.02 4.09 16 40 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -97.91 358.32 -1.14 -99.05 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.23 Total: 18.51 kcal Atomic # 6 Polarization: -52.47 SS G_CDS: 4.67 Total: -47.80 kcal Atomic # 7 Polarization: -73.99 SS G_CDS: -2.29 Total: -76.28 kcal Atomic # 8 Polarization: -132.41 SS G_CDS: -5.41 Total: -137.83 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 1.88 Total: 41.29 kcal Atomic # 16 Polarization: 103.28 SS G_CDS: -0.22 Total: 103.06 kcal Total: -97.91 -1.14 -99.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265664.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.645 kcal (2) G-P(sol) polarization free energy of solvation -97.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds