Wall clock time and date at job start Fri Apr 10 2020 18:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.51275 * 2 1 4 4 N 1.46495 * 109.47244 * 60.00027 * 3 2 1 5 5 C 1.34774 * 120.00102 * 180.02562 * 4 3 2 6 6 O 1.21648 * 119.99953 * 359.97438 * 5 4 3 7 7 C 1.47177 * 120.00453 * 180.02562 * 5 4 3 8 8 C 1.35096 * 122.49219 * 179.73132 * 7 5 4 9 9 S 1.76187 * 108.21783 * 179.90899 * 8 7 5 10 10 C 1.76048 * 90.16040 * 0.29110 * 9 8 7 11 11 O 1.35499 * 125.17814 * 179.82366 * 10 9 8 12 12 N 1.29248 * 109.64309 * 359.82998 * 10 9 8 13 13 C 1.53294 * 109.51411 * 239.89734 * 2 1 3 14 14 N 1.47151 * 108.38209 * 292.37993 * 13 2 1 15 15 C 1.36934 * 120.98407 * 129.44538 * 14 13 2 16 16 H 1.08005 * 119.99855 * 333.75735 * 15 14 13 17 17 C 1.38814 * 120.00512 * 153.75825 * 15 14 13 18 18 N 1.31613 * 120.00430 * 160.00326 * 17 15 14 19 19 Si 1.86801 * 119.99572 * 340.00024 * 17 15 14 20 20 H 1.48500 * 109.46914 * 91.87154 * 19 17 15 21 21 H 1.48493 * 109.47166 * 211.87097 * 19 17 15 22 22 H 1.48495 * 109.47294 * 331.87627 * 19 17 15 23 23 C 1.47152 * 118.03490 * 309.45998 * 14 13 2 24 24 C 1.53299 * 108.38371 * 50.53957 * 23 14 13 25 25 O 1.42962 * 109.21991 * 307.69357 * 24 23 14 26 26 H 1.08999 * 109.46929 * 180.10507 * 1 2 3 27 27 H 1.09002 * 109.47101 * 300.10633 * 1 2 3 28 28 H 1.09001 * 109.47032 * 60.10416 * 1 2 3 29 29 H 1.08995 * 109.47249 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46884 * 299.99725 * 3 2 1 31 31 H 0.97000 * 120.00184 * 0.02562 * 4 3 2 32 32 H 1.07993 * 125.88458 * 0.02562 * 8 7 5 33 33 H 0.96693 * 114.00409 * 270.00575 * 11 10 9 34 34 H 1.09006 * 109.68086 * 52.09948 * 13 2 1 35 35 H 1.09003 * 109.68285 * 172.61610 * 13 2 1 36 36 H 0.96997 * 120.00298 * 179.97438 * 18 17 15 37 37 H 1.09003 * 109.67917 * 170.26136 * 23 14 13 38 38 H 1.08999 * 109.68349 * 290.81718 * 23 14 13 39 39 H 1.08998 * 109.51188 * 67.62009 * 24 23 14 40 40 H 1.08996 * 109.51044 * 187.72379 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4422 0.0000 4 7 1.5532 2.1331 1.1961 5 6 1.8793 3.4234 1.4091 6 8 2.5791 4.0140 0.6084 7 6 1.3898 4.1175 2.6111 8 6 1.6900 5.4075 2.8770 9 16 0.9134 5.8522 4.3947 10 6 0.2512 4.2273 4.5377 11 8 -0.5266 3.7881 5.5566 12 7 0.6201 3.5169 3.5229 13 6 2.0420 -0.7247 -1.2500 14 7 1.6959 -2.1502 -1.1344 15 6 1.0608 -2.8064 -2.1548 16 1 0.4405 -2.2564 -2.8471 17 6 1.2142 -4.1784 -2.2995 18 7 0.3359 -4.8691 -2.9951 19 14 2.6672 -5.0444 -1.5070 20 1 2.2819 -5.5206 -0.1542 21 1 3.0693 -6.2034 -2.3438 22 1 3.8056 -4.0977 -1.3928 23 6 2.0521 -2.8497 0.1102 24 6 1.5396 -2.0215 1.2940 25 8 2.0076 -0.6768 1.1652 26 1 -0.3633 -1.0277 0.0019 27 1 -0.3633 0.5155 0.8890 28 1 -0.3633 0.5122 -0.8909 29 1 3.1310 1.4414 -0.0005 30 1 1.6781 1.9562 -0.8901 31 1 0.9955 1.6621 1.8348 32 1 2.2992 6.0550 2.2640 33 1 -0.0308 3.4055 6.2933 34 1 1.5704 -0.3032 -2.1378 35 1 3.1240 -0.6136 -1.3214 36 1 0.4433 -5.8278 -3.0965 37 1 1.5872 -3.8355 0.1232 38 1 3.1352 -2.9532 0.1762 39 1 0.4496 -2.0288 1.2987 40 1 1.9106 -2.4492 2.2253 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108150929.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:59 Heat of formation + Delta-G solvation = -30.777530 kcal Electronic energy + Delta-G solvation = -25877.353525 eV Core-core repulsion = 22014.255042 eV Total energy + Delta-G solvation = -3863.098483 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.72737 -39.60627 -38.84853 -37.45680 -35.27279 -34.46653 -32.17820 -31.42405 -30.41417 -28.42662 -27.20201 -26.25927 -24.98481 -23.17659 -22.76759 -21.36065 -20.20982 -19.78671 -19.02739 -18.27052 -17.17966 -16.80040 -16.41591 -16.10262 -15.54164 -15.51492 -15.23722 -14.74781 -14.56592 -14.27539 -14.02951 -13.85524 -13.64951 -13.44073 -12.71232 -12.45206 -12.41911 -12.31501 -12.25423 -11.86532 -11.58725 -11.45973 -11.02284 -10.81803 -10.48716 -10.33896 -10.30181 -10.10975 -10.05259 -9.68437 -9.55034 -9.41110 -9.35970 -8.99116 -8.59621 -7.04493 -6.00987 -3.38220 -0.02665 0.49589 1.00781 1.54621 2.88971 3.14848 3.24966 3.26592 3.44859 3.47795 4.02498 4.30399 4.46680 4.72955 4.76197 4.84008 5.11649 5.22719 5.28643 5.32827 5.39369 5.70452 5.78345 5.82212 5.86191 5.98628 6.07188 6.22966 6.24796 6.38671 6.46275 6.48696 6.57268 6.57889 6.74173 6.89930 7.50061 7.61987 7.82404 8.08250 8.24460 8.82440 9.63285 9.99228 11.14609 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.027284 B = 0.002717 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.005691 B =10304.874977 C =10722.615616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.087 3.913 3 C 0.136 3.864 4 N -0.695 5.695 5 C 0.588 3.412 6 O -0.537 6.537 7 C 0.029 3.971 8 C -0.166 4.166 9 S 0.101 5.899 10 C 0.259 3.741 11 O -0.430 6.430 12 N -0.458 5.458 13 C 0.132 3.868 14 N -0.604 5.604 15 C -0.260 4.260 16 H 0.089 0.911 17 C 0.024 3.976 18 N -0.907 5.907 19 Si 0.884 3.116 20 H -0.288 1.288 21 H -0.303 1.303 22 H -0.270 1.270 23 C 0.089 3.911 24 C 0.046 3.954 25 O -0.379 6.379 26 H 0.079 0.921 27 H 0.049 0.951 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.414 0.586 32 H 0.197 0.803 33 H 0.410 0.590 34 H 0.074 0.926 35 H 0.034 0.966 36 H 0.264 0.736 37 H 0.081 0.919 38 H 0.034 0.966 39 H 0.057 0.943 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.979 19.764 17.747 26.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.045 3.955 3 C 0.012 3.988 4 N -0.346 5.346 5 C 0.371 3.629 6 O -0.415 6.415 7 C -0.103 4.103 8 C -0.307 4.307 9 S 0.348 5.652 10 C -0.062 4.062 11 O -0.237 6.237 12 N -0.185 5.185 13 C 0.005 3.995 14 N -0.328 5.328 15 C -0.388 4.388 16 H 0.106 0.894 17 C -0.175 4.175 18 N -0.550 5.550 19 Si 0.714 3.286 20 H -0.216 1.216 21 H -0.231 1.231 22 H -0.195 1.195 23 C -0.036 4.036 24 C -0.032 4.032 25 O -0.299 6.299 26 H 0.098 0.902 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.251 0.749 32 H 0.214 0.786 33 H 0.269 0.731 34 H 0.093 0.907 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.798 20.587 17.492 27.026 hybrid contribution 0.909 -1.695 0.266 1.942 sum 1.707 18.892 17.758 25.984 Atomic orbital electron populations 1.22269 0.94971 1.03985 1.01346 1.22233 0.94114 0.90367 0.88756 1.21453 1.00086 0.89829 0.87390 1.45774 1.52245 1.10912 1.25686 1.17017 0.80342 0.81984 0.83574 1.90837 1.38387 1.66603 1.45658 1.20030 1.00802 0.92340 0.97130 1.27158 1.04339 0.98840 1.00377 1.85353 1.44369 1.16691 1.18762 1.25007 0.97132 0.91366 0.92668 1.84872 1.31723 1.79251 1.27857 1.66758 1.12539 1.36394 1.02783 1.21460 0.97742 0.85484 0.94839 1.44299 1.69239 1.05719 1.13553 1.18895 1.21749 0.91137 1.06992 0.89378 1.25239 0.97973 0.96477 0.97830 1.69815 1.34318 1.07130 1.43716 0.86971 0.85199 0.78877 0.77513 1.21628 1.23094 1.19539 1.22031 0.98185 0.96779 0.86652 1.23090 0.99043 0.82417 0.98661 1.87844 1.72773 1.26110 1.43138 0.90173 0.93191 0.91729 0.90402 0.89638 0.74891 0.78641 0.73121 0.90744 0.94789 0.92660 0.90098 0.94815 0.92522 0.89700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 7.92 37.16 0.29 -2.37 16 2 C 0.09 1.42 0.76 -90.47 -0.07 1.35 16 3 C 0.14 1.99 4.82 -4.04 -0.02 1.97 16 4 N -0.70 -9.62 5.15 -61.46 -0.32 -9.93 16 5 C 0.59 8.25 7.79 -12.63 -0.10 8.15 16 6 O -0.54 -8.71 16.67 5.24 0.09 -8.62 16 7 C 0.03 0.34 6.67 -84.59 -0.56 -0.23 16 8 C -0.17 -1.50 10.84 29.61 0.32 -1.18 16 9 S 0.10 0.69 23.42 -107.50 -2.52 -1.83 16 10 C 0.26 2.25 8.88 51.68 0.46 2.71 16 11 O -0.43 -2.83 13.64 -18.19 -0.25 -3.08 16 12 N -0.46 -5.16 10.01 -11.34 -0.11 -5.28 16 13 C 0.13 2.54 5.40 -3.53 -0.02 2.52 16 14 N -0.60 -13.95 2.35 -171.82 -0.40 -14.35 16 15 C -0.26 -7.04 10.10 -15.06 -0.15 -7.20 16 16 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 17 C 0.02 0.68 5.26 -17.43 -0.09 0.59 16 18 N -0.91 -27.32 13.97 55.49 0.78 -26.55 16 19 Si 0.88 22.09 24.29 -169.99 -4.13 17.96 16 20 H -0.29 -6.89 6.58 56.52 0.37 -6.52 16 21 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 22 H -0.27 -6.72 6.55 56.52 0.37 -6.35 16 23 C 0.09 1.91 4.38 -3.53 -0.02 1.89 16 24 C 0.05 0.81 6.60 37.31 0.25 1.05 16 25 O -0.38 -6.60 9.98 -35.23 -0.35 -6.96 16 26 H 0.08 1.47 6.11 -51.93 -0.32 1.15 16 27 H 0.05 0.71 6.86 -51.93 -0.36 0.35 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.41 5.62 6.68 -40.82 -0.27 5.35 16 32 H 0.20 1.48 8.01 -52.49 -0.42 1.06 16 33 H 0.41 0.51 9.06 45.56 0.41 0.92 16 34 H 0.07 1.39 7.95 -51.93 -0.41 0.98 16 35 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 37 H 0.08 1.86 4.61 -51.93 -0.24 1.62 16 38 H 0.03 0.74 6.87 -51.93 -0.36 0.38 16 39 H 0.06 0.99 6.25 -51.93 -0.32 0.67 16 40 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 338.59 15.07 5.10 5.10 Total: -1.00 -33.65 338.59 -5.84 -39.49 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -4.02 Total: 4.78 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: 0.29 Total: 9.25 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: -0.06 Total: -56.11 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.51 Total: -18.65 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.13 Total: 17.96 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -2.52 Total: -1.83 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.65 -5.84 -39.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108150929.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.715 kcal (2) G-P(sol) polarization free energy of solvation -33.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds