Wall clock time and date at job start Fri Apr 10 2020 18:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.51275 * 2 1 4 4 N 1.46495 * 109.47244 * 60.00027 * 3 2 1 5 5 C 1.34774 * 120.00102 * 180.02562 * 4 3 2 6 6 O 1.21648 * 119.99953 * 359.97438 * 5 4 3 7 7 C 1.47177 * 120.00453 * 180.02562 * 5 4 3 8 8 C 1.35096 * 122.49219 * 179.73132 * 7 5 4 9 9 S 1.76187 * 108.21783 * 179.90899 * 8 7 5 10 10 C 1.76048 * 90.16040 * 0.29110 * 9 8 7 11 11 O 1.35499 * 125.17814 * 179.82366 * 10 9 8 12 12 N 1.29248 * 109.64309 * 359.82998 * 10 9 8 13 13 C 1.53294 * 109.51411 * 239.89734 * 2 1 3 14 14 N 1.47151 * 108.38209 * 292.37993 * 13 2 1 15 15 C 1.36934 * 120.98407 * 129.44538 * 14 13 2 16 16 H 1.08005 * 119.99855 * 333.75735 * 15 14 13 17 17 C 1.38814 * 120.00512 * 153.75825 * 15 14 13 18 18 N 1.31613 * 120.00430 * 160.00326 * 17 15 14 19 19 Si 1.86801 * 119.99572 * 340.00024 * 17 15 14 20 20 H 1.48500 * 109.46914 * 91.87154 * 19 17 15 21 21 H 1.48493 * 109.47166 * 211.87097 * 19 17 15 22 22 H 1.48495 * 109.47294 * 331.87627 * 19 17 15 23 23 C 1.47152 * 118.03490 * 309.45998 * 14 13 2 24 24 C 1.53299 * 108.38371 * 50.53957 * 23 14 13 25 25 O 1.42962 * 109.21991 * 307.69357 * 24 23 14 26 26 H 1.08999 * 109.46929 * 180.10507 * 1 2 3 27 27 H 1.09002 * 109.47101 * 300.10633 * 1 2 3 28 28 H 1.09001 * 109.47032 * 60.10416 * 1 2 3 29 29 H 1.08995 * 109.47249 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46884 * 299.99725 * 3 2 1 31 31 H 0.97000 * 120.00184 * 0.02562 * 4 3 2 32 32 H 1.07993 * 125.88458 * 0.02562 * 8 7 5 33 33 H 0.96693 * 114.00409 * 270.00575 * 11 10 9 34 34 H 1.09006 * 109.68086 * 52.09948 * 13 2 1 35 35 H 1.09003 * 109.68285 * 172.61610 * 13 2 1 36 36 H 0.96997 * 120.00298 * 179.97438 * 18 17 15 37 37 H 1.09003 * 109.67917 * 170.26136 * 23 14 13 38 38 H 1.08999 * 109.68349 * 290.81718 * 23 14 13 39 39 H 1.08998 * 109.51188 * 67.62009 * 24 23 14 40 40 H 1.08996 * 109.51044 * 187.72379 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4422 0.0000 4 7 1.5532 2.1331 1.1961 5 6 1.8793 3.4234 1.4091 6 8 2.5791 4.0140 0.6084 7 6 1.3898 4.1175 2.6111 8 6 1.6900 5.4075 2.8770 9 16 0.9134 5.8522 4.3947 10 6 0.2512 4.2273 4.5377 11 8 -0.5266 3.7881 5.5566 12 7 0.6201 3.5169 3.5229 13 6 2.0420 -0.7247 -1.2500 14 7 1.6959 -2.1502 -1.1344 15 6 1.0608 -2.8064 -2.1548 16 1 0.4405 -2.2564 -2.8471 17 6 1.2142 -4.1784 -2.2995 18 7 0.3359 -4.8691 -2.9951 19 14 2.6672 -5.0444 -1.5070 20 1 2.2819 -5.5206 -0.1542 21 1 3.0693 -6.2034 -2.3438 22 1 3.8056 -4.0977 -1.3928 23 6 2.0521 -2.8497 0.1102 24 6 1.5396 -2.0215 1.2940 25 8 2.0076 -0.6768 1.1652 26 1 -0.3633 -1.0277 0.0019 27 1 -0.3633 0.5155 0.8890 28 1 -0.3633 0.5122 -0.8909 29 1 3.1310 1.4414 -0.0005 30 1 1.6781 1.9562 -0.8901 31 1 0.9955 1.6621 1.8348 32 1 2.2992 6.0550 2.2640 33 1 -0.0308 3.4055 6.2933 34 1 1.5704 -0.3032 -2.1378 35 1 3.1240 -0.6136 -1.3214 36 1 0.4433 -5.8278 -3.0965 37 1 1.5872 -3.8355 0.1232 38 1 3.1352 -2.9532 0.1762 39 1 0.4496 -2.0288 1.2987 40 1 1.9106 -2.4492 2.2253 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108150929.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:58 Heat of formation + Delta-G solvation = -60.822076 kcal Electronic energy + Delta-G solvation = -25878.656354 eV Core-core repulsion = 22014.255042 eV Total energy + Delta-G solvation = -3864.401312 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.63112 -40.84757 -39.83384 -38.09034 -36.80080 -35.93901 -33.77663 -33.20917 -31.14520 -29.98254 -28.34142 -27.92248 -25.94632 -24.82336 -23.84286 -22.81047 -21.13694 -20.59864 -20.28853 -19.06823 -18.91624 -17.97011 -17.36882 -17.28999 -17.15799 -16.57001 -16.28334 -16.02891 -15.88622 -15.58361 -15.46081 -15.32172 -14.83377 -14.48796 -14.26213 -14.00192 -13.78625 -13.44091 -13.28210 -13.10388 -12.97341 -12.85589 -12.60146 -12.36706 -12.16741 -12.09663 -11.56482 -11.45724 -11.26325 -11.06897 -10.81441 -10.67560 -10.49911 -10.25480 -9.86138 -8.95866 -8.18728 -5.51913 -0.67335 -0.09350 0.34966 0.74895 1.26721 1.40585 1.48693 2.05429 2.20180 2.38416 2.44786 2.67378 3.00304 3.21524 3.59234 3.77457 3.86368 3.95684 4.09008 4.14369 4.23697 4.28392 4.44636 4.53245 4.59956 4.64748 4.68705 4.74672 4.83384 4.92409 4.99892 5.03402 5.27506 5.33680 5.78231 6.08613 6.09946 6.21178 6.34304 6.52001 6.81599 7.04006 7.54394 7.95032 9.00668 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.027284 B = 0.002717 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.005691 B =10304.874977 C =10722.615616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.097 3.903 3 C 0.144 3.856 4 N -0.694 5.694 5 C 0.588 3.412 6 O -0.566 6.566 7 C 0.003 3.997 8 C -0.167 4.167 9 S 0.175 5.825 10 C 0.253 3.747 11 O -0.436 6.436 12 N -0.489 5.489 13 C 0.126 3.874 14 N -0.616 5.616 15 C -0.244 4.244 16 H 0.059 0.941 17 C -0.033 4.033 18 N -0.955 5.955 19 Si 0.945 3.055 20 H -0.269 1.269 21 H -0.312 1.312 22 H -0.267 1.267 23 C 0.082 3.918 24 C 0.054 3.946 25 O -0.378 6.378 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.416 0.584 32 H 0.207 0.793 33 H 0.432 0.568 34 H 0.074 0.926 35 H 0.038 0.962 36 H 0.262 0.738 37 H 0.065 0.935 38 H 0.035 0.965 39 H 0.058 0.942 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.578 21.669 20.652 29.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.056 3.944 3 C 0.020 3.980 4 N -0.344 5.344 5 C 0.372 3.628 6 O -0.446 6.446 7 C -0.128 4.128 8 C -0.309 4.309 9 S 0.424 5.576 10 C -0.067 4.067 11 O -0.247 6.247 12 N -0.216 5.216 13 C 0.000 4.000 14 N -0.341 5.341 15 C -0.373 4.373 16 H 0.076 0.924 17 C -0.228 4.228 18 N -0.601 5.601 19 Si 0.774 3.226 20 H -0.196 1.196 21 H -0.241 1.241 22 H -0.192 1.192 23 C -0.043 4.043 24 C -0.024 4.024 25 O -0.297 6.297 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.254 0.746 32 H 0.223 0.777 33 H 0.295 0.705 34 H 0.092 0.908 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.053 0.947 39 H 0.076 0.924 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.409 22.524 20.476 30.472 hybrid contribution 0.666 -2.119 -0.563 2.291 sum 2.075 20.405 19.913 28.587 Atomic orbital electron populations 1.22180 0.94464 1.02593 1.02546 1.22084 0.94336 0.90920 0.87063 1.21286 0.99793 0.88651 0.88277 1.45699 1.52287 1.11087 1.25331 1.17343 0.79657 0.81708 0.84057 1.90810 1.39761 1.67132 1.46940 1.19685 1.02829 0.93193 0.97113 1.27446 1.03698 0.98210 1.01564 1.85145 1.42186 1.14174 1.16087 1.25188 0.96550 0.92405 0.92543 1.84833 1.32191 1.79524 1.28134 1.66680 1.13605 1.37707 1.03628 1.21632 0.98069 0.83701 0.96605 1.44376 1.69217 1.07074 1.13460 1.18821 1.20457 0.91077 1.06972 0.92372 1.25826 1.00191 0.97383 0.99370 1.69939 1.36240 1.07327 1.46583 0.85973 0.81891 0.77361 0.77356 1.19587 1.24143 1.19187 1.22121 0.98096 0.96751 0.87310 1.23050 0.99166 0.81952 0.98215 1.87866 1.72844 1.25875 1.43108 0.92713 0.91252 0.91329 0.90799 0.88943 0.74642 0.77652 0.70496 0.90792 0.94390 0.92876 0.91728 0.94722 0.92420 0.86382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.93 7.92 71.98 0.57 -4.36 16 2 C 0.10 3.07 0.76 -10.69 -0.01 3.06 16 3 C 0.14 4.03 4.82 86.38 0.42 4.45 16 4 N -0.69 -18.33 5.15 -466.60 -2.40 -20.73 16 5 C 0.59 15.95 7.79 86.59 0.67 16.63 16 6 O -0.57 -18.04 16.67 -4.18 -0.07 -18.11 16 7 C 0.00 0.07 6.67 40.50 0.27 0.34 16 8 C -0.17 -2.68 10.84 67.10 0.73 -1.95 16 9 S 0.18 1.84 23.42 -56.49 -1.32 0.52 16 10 C 0.25 3.77 8.88 130.62 1.16 4.93 16 11 O -0.44 -4.58 13.64 -88.01 -1.20 -5.78 16 12 N -0.49 -10.16 10.01 -304.24 -3.05 -13.21 16 13 C 0.13 4.79 5.40 86.35 0.47 5.26 16 14 N -0.62 -28.36 2.35 -697.52 -1.64 -30.00 16 15 C -0.24 -13.51 10.10 84.03 0.85 -12.66 16 16 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 17 C -0.03 -1.89 5.26 84.86 0.45 -1.44 16 18 N -0.95 -59.22 13.97 21.65 0.30 -58.92 16 19 Si 0.94 46.08 24.29 68.60 1.67 47.74 16 20 H -0.27 -12.18 6.58 99.48 0.65 -11.52 16 21 H -0.31 -15.61 7.11 99.48 0.71 -14.91 16 22 H -0.27 -12.72 6.55 99.48 0.65 -12.06 16 23 C 0.08 3.40 4.38 86.36 0.38 3.78 16 24 C 0.05 1.78 6.60 72.08 0.48 2.25 16 25 O -0.38 -12.34 9.98 -148.98 -1.49 -13.83 16 26 H 0.05 1.98 6.11 -2.39 -0.01 1.96 16 27 H 0.07 1.85 6.86 -2.39 -0.02 1.84 16 28 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.09 2.47 8.14 -2.38 -0.02 2.45 16 31 H 0.42 10.67 6.68 -92.71 -0.62 10.05 16 32 H 0.21 2.72 8.01 -2.91 -0.02 2.69 16 33 H 0.43 -0.14 9.06 -74.06 -0.67 -0.81 16 34 H 0.07 2.78 7.95 -2.38 -0.02 2.76 16 35 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 37 H 0.06 2.89 4.61 -2.39 -0.01 2.88 16 38 H 0.03 1.44 6.87 -2.39 -0.02 1.43 16 39 H 0.06 1.91 6.25 -2.39 -0.01 1.90 16 40 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -73.41 338.59 -3.06 -76.47 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -0.28 Total: 15.53 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: 6.43 Total: 20.30 kcal Atomic # 7 Polarization: -116.07 SS G_CDS: -6.79 Total: -122.85 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -2.76 Total: -37.71 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 1.67 Total: 47.74 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -1.32 Total: 0.52 kcal Total: -73.41 -3.06 -76.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108150929.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.645 kcal (2) G-P(sol) polarization free energy of solvation -73.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds