Wall clock time and date at job start Fri Apr 10 2020 18:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.50697 * 109.47491 * 179.97438 * 10 9 7 12 12 O 1.21293 * 119.99451 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00483 * 179.97438 * 11 10 9 14 14 C 1.39469 * 120.00439 * 179.97438 * 13 11 10 15 15 C 1.36115 * 126.21249 * 0.02595 * 14 13 11 16 16 C 1.39762 * 107.82371 * 179.97438 * 15 14 13 17 17 N 1.30841 * 108.32782 * 0.02562 * 16 15 14 18 18 N 1.35258 * 126.21867 * 179.71955 * 14 13 11 19 19 C 1.46502 * 126.04919 * 359.97438 * 18 14 13 20 20 H 1.09005 * 109.63749 * 0.43782 * 19 18 14 21 21 C 1.53873 * 109.64820 * 240.00359 * 19 18 14 22 22 C 1.55049 * 106.62382 * 192.96482 * 21 19 18 23 23 S 1.83288 * 102.56332 * 42.43487 * 22 21 19 24 24 O 1.42098 * 109.35272 * 90.18918 * 23 22 21 25 25 O 1.42106 * 109.35419 * 223.38676 * 23 22 21 26 26 C 1.54166 * 109.64461 * 120.72412 * 19 18 14 27 27 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 29 29 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 30 30 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 31 31 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 32 32 H 0.97000 * 119.99567 * 0.02562 * 13 11 10 33 33 H 1.08000 * 126.08935 * 0.04240 * 15 14 13 34 34 H 1.08004 * 125.83477 * 180.02562 * 16 15 14 35 35 H 1.08998 * 110.03255 * 312.25705 * 21 19 18 36 36 H 1.08999 * 110.02441 * 73.67711 * 21 19 18 37 37 H 1.08996 * 110.79391 * 160.70153 * 22 21 19 38 38 H 1.09005 * 110.79114 * 284.17230 * 22 21 19 39 39 H 1.08995 * 110.32338 * 266.66979 * 26 19 18 40 40 H 1.09008 * 110.31857 * 28.86824 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4916 -4.9672 -0.0157 12 8 0.2787 -4.9671 -0.0149 13 7 2.1653 -6.1344 -0.0212 14 6 1.4680 -7.3422 -0.0256 15 6 0.1149 -7.4895 -0.0253 16 6 -0.1664 -8.8585 -0.0311 17 7 0.9674 -9.5115 -0.0342 18 7 2.0134 -8.5799 -0.0366 19 6 3.4449 -8.8912 -0.0467 20 1 4.0211 -7.9659 -0.0362 21 6 3.7895 -9.7009 -1.3090 22 6 5.2148 -10.2721 -1.0943 23 16 5.1627 -10.8281 0.6515 24 8 4.7293 -12.1804 0.7022 25 8 6.3647 -10.4429 1.3045 26 6 3.8008 -9.7341 1.1940 27 1 -0.4850 0.8401 -0.0004 28 1 0.6242 -2.5609 0.8844 29 1 0.6244 -2.5529 -0.8956 30 1 2.8718 -3.6005 -0.9002 31 1 2.8717 -3.6084 0.8798 32 1 3.1354 -6.1344 -0.0215 33 1 -0.6120 -6.6908 -0.0223 34 1 -1.1514 -9.3017 -0.0328 35 1 3.0763 -10.5153 -1.4363 36 1 3.7755 -9.0516 -2.1843 37 1 5.3995 -11.1130 -1.7627 38 1 5.9675 -9.4955 -1.2306 39 1 4.1343 -9.0892 2.0069 40 1 2.9416 -10.3269 1.5081 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117700116.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:15 Heat of formation + Delta-G solvation = -20.289560 kcal Electronic energy + Delta-G solvation = -25204.531649 eV Core-core repulsion = 21341.887959 eV Total energy + Delta-G solvation = -3862.643690 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.66849 -39.37192 -37.57297 -37.23404 -36.48398 -34.83668 -33.65438 -31.96437 -31.29889 -29.78764 -28.90209 -25.93487 -25.69252 -23.02094 -22.80986 -21.13075 -20.30192 -19.63770 -19.38257 -18.53453 -17.36812 -17.00909 -16.73069 -16.17372 -15.82382 -15.73949 -15.22442 -14.91806 -14.80210 -14.54453 -14.50111 -13.99923 -13.67506 -13.27310 -12.97706 -12.91203 -12.77296 -12.64112 -12.53343 -12.49916 -12.31090 -11.99724 -11.38085 -11.33818 -11.04884 -10.95748 -10.91760 -10.78223 -10.65143 -10.14553 -9.80335 -9.43579 -9.22617 -9.17745 -8.43419 -8.09481 -6.06914 -4.12243 -0.56287 1.59790 1.78259 2.08994 2.71765 2.95526 3.02839 3.13171 3.26599 3.33574 3.35386 3.41649 3.60543 3.81608 3.89854 4.00878 4.24395 4.38088 4.66388 4.83492 4.91321 4.92473 5.02633 5.17208 5.27806 5.28628 5.50716 5.56740 5.90937 5.94943 5.96128 6.17976 6.61969 6.67812 6.92025 7.28485 7.60633 7.67268 7.68191 7.92573 8.19517 8.34608 8.95130 9.52229 11.03882 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.019049 B = 0.002511 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.502959 B =11150.326887 C =12257.237144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.060 3.940 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.531 4.531 8 H 0.057 0.943 9 C 0.036 3.964 10 C -0.124 4.124 11 C 0.515 3.485 12 O -0.493 6.493 13 N -0.663 5.663 14 C 0.318 3.682 15 C -0.283 4.283 16 C 0.069 3.931 17 N -0.301 5.301 18 N -0.390 5.390 19 C 0.178 3.822 20 H 0.113 0.887 21 C -0.130 4.130 22 C -0.586 4.586 23 S 2.399 3.601 24 O -0.926 6.926 25 O -0.932 6.932 26 C -0.613 4.613 27 H 0.262 0.738 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.406 0.594 33 H 0.176 0.824 34 H 0.187 0.813 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.146 0.854 38 H 0.143 0.857 39 H 0.147 0.853 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.836 -21.574 -1.975 23.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.569 4.569 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.164 4.164 11 C 0.305 3.695 12 O -0.363 6.363 13 N -0.312 5.312 14 C 0.099 3.901 15 C -0.314 4.314 16 C -0.117 4.117 17 N -0.123 5.123 18 N -0.179 5.179 19 C 0.073 3.927 20 H 0.131 0.869 21 C -0.170 4.170 22 C -0.716 4.716 23 S 2.580 3.420 24 O -0.923 6.923 25 O -0.929 6.929 26 C -0.741 4.741 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.241 0.759 33 H 0.193 0.807 34 H 0.204 0.796 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.164 0.836 38 H 0.162 0.838 39 H 0.165 0.835 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 9.990 -23.171 -1.464 25.275 hybrid contribution 0.151 2.324 -0.384 2.361 sum 10.141 -20.846 -1.848 23.256 Atomic orbital electron populations 1.69987 1.06077 1.26804 1.49722 1.25019 0.94843 0.99317 0.95104 0.86570 0.79763 0.83370 0.78121 1.20626 1.21156 1.19850 1.21156 0.92936 0.90812 1.52034 0.92505 1.18945 0.93087 0.89146 0.98940 1.21946 1.00949 0.90368 1.03142 1.21937 0.88951 0.84458 0.74199 1.90635 1.14211 1.86275 1.45153 1.43581 1.10236 1.02984 1.74441 1.18258 0.91600 0.79989 1.00209 1.21796 0.93178 0.97713 1.18748 1.23826 0.97255 0.92890 0.97760 1.77339 0.93999 1.13056 1.27859 1.48421 1.04928 1.02291 1.62280 1.21407 0.78852 0.99849 0.92570 0.86896 1.22570 0.93733 1.02195 0.98459 1.30640 1.04083 1.12725 1.24153 1.08889 0.76821 0.76864 0.79432 1.93653 1.82492 1.30477 1.85668 1.93646 1.42317 1.84275 1.72638 1.31062 1.20890 1.15500 1.06669 0.92799 0.95540 0.95549 0.89528 0.89516 0.75887 0.80663 0.79623 0.87542 0.87566 0.83577 0.83845 0.83528 0.82664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.24 13.29 55.43 0.74 -25.51 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 20.78 29.54 -169.99 -5.02 15.75 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 7 C -0.53 -14.14 9.11 -34.44 -0.31 -14.46 16 8 H 0.06 1.42 7.74 -52.49 -0.41 1.01 16 9 C 0.04 0.90 4.26 -27.88 -0.12 0.78 16 10 C -0.12 -2.17 5.64 -27.89 -0.16 -2.33 16 11 C 0.52 8.61 7.79 -10.99 -0.09 8.52 16 12 O -0.49 -10.15 13.11 5.55 0.07 -10.08 16 13 N -0.66 -8.17 5.42 -11.46 -0.06 -8.23 16 14 C 0.32 4.21 7.66 -153.16 -1.17 3.03 16 15 C -0.28 -4.13 9.65 -39.78 -0.38 -4.51 16 16 C 0.07 0.84 12.01 -17.40 -0.21 0.63 16 17 N -0.30 -3.65 12.04 30.60 0.37 -3.28 16 18 N -0.39 -4.22 3.30 -52.87 -0.17 -4.39 16 19 C 0.18 1.20 3.39 -66.87 -0.23 0.98 16 20 H 0.11 0.45 6.83 -51.93 -0.35 0.10 16 21 C -0.13 -0.68 6.05 -25.19 -0.15 -0.83 16 22 C -0.59 -1.97 7.31 38.24 0.28 -1.69 16 23 S 2.40 15.14 6.11 -107.50 -0.66 14.48 16 24 O -0.93 -9.48 18.15 -57.71 -1.05 -10.52 16 25 O -0.93 -8.90 18.15 -57.71 -1.05 -9.95 16 26 C -0.61 -3.77 6.92 37.77 0.26 -3.51 16 27 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 28 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 29 H 0.03 0.71 8.10 -51.93 -0.42 0.29 16 30 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.41 3.32 7.53 -40.82 -0.31 3.01 16 33 H 0.18 2.95 5.83 -52.49 -0.31 2.64 16 34 H 0.19 1.64 8.06 -52.48 -0.42 1.21 16 35 H 0.11 0.66 8.06 -51.93 -0.42 0.24 16 36 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.15 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.14 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.15 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.16 1.16 7.74 -51.92 -0.40 0.76 16 LS Contribution 350.82 15.07 5.29 5.29 Total: -1.00 -38.88 350.82 -9.05 -47.93 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -5.13 Total: 0.35 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -2.38 Total: -11.84 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 0.87 Total: -41.41 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -2.02 Total: -30.55 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 15.14 SS G_CDS: -0.66 Total: 14.48 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -38.88 -9.05 -47.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117700116.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.644 kcal (2) G-P(sol) polarization free energy of solvation -38.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds