Wall clock time and date at job start Fri Apr 10 2020 18:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86803 * 120.00061 * 2 1 4 4 H 1.48497 * 109.47012 * 239.99713 * 3 2 1 5 5 H 1.48497 * 109.46982 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47034 * 120.00002 * 3 2 1 7 7 C 1.38950 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99750 * 180.02562 * 7 2 1 9 9 N 1.37094 * 119.99807 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99957 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99987 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00067 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.47280 * 179.97438 * 12 10 9 14 14 C 1.46894 * 111.00144 * 179.97438 * 13 12 10 15 15 C 1.53003 * 109.47403 * 179.97438 * 14 13 12 16 16 N 1.46494 * 109.47652 * 179.97438 * 15 14 13 17 17 C 1.34773 * 120.00394 * 180.02562 * 16 15 14 18 18 O 1.21284 * 120.00053 * 359.97438 * 17 16 15 19 19 C 1.50695 * 120.00003 * 180.02562 * 17 16 15 20 20 O 1.42905 * 109.47208 * 180.02562 * 19 17 16 21 21 C 1.36232 * 117.00188 * 179.97438 * 20 19 17 22 22 C 1.38668 * 122.58400 * 179.97438 * 21 20 19 23 23 C 1.33433 * 114.88144 * 180.02562 * 22 21 20 24 24 S 1.75865 * 109.66167 * 359.75827 * 23 22 21 25 25 C 1.33630 * 122.58638 * 0.02643 * 21 20 19 26 26 H 0.97003 * 119.99757 * 0.02562 * 1 2 3 27 27 H 0.97003 * 120.00461 * 359.97438 * 9 7 2 28 28 H 1.09001 * 109.47338 * 59.99265 * 12 10 9 29 29 H 1.09003 * 109.46764 * 299.99381 * 12 10 9 30 30 H 1.00902 * 111.00066 * 303.95488 * 13 12 10 31 31 H 1.09005 * 109.47492 * 59.99833 * 14 13 12 32 32 H 1.09001 * 109.47301 * 299.99671 * 14 13 12 33 33 H 1.09005 * 109.46732 * 59.99614 * 15 14 13 34 34 H 1.09005 * 109.47311 * 300.00258 * 15 14 13 35 35 H 0.97005 * 119.99361 * 0.02562 * 16 15 14 36 36 H 1.08997 * 109.47783 * 59.99584 * 19 17 16 37 37 H 1.09001 * 109.47298 * 299.99616 * 19 17 16 38 38 H 1.07996 * 122.55913 * 0.04163 * 22 21 20 39 39 H 1.08000 * 125.16852 * 180.02562 * 23 22 21 40 40 H 1.08002 * 125.19356 * 359.94691 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1019 1.6963 -1.2124 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2437 -4.8629 0.0010 13 7 2.1982 -5.9795 0.0017 14 6 1.4979 -7.2707 0.0018 15 6 2.5228 -8.4068 0.0019 16 7 1.8245 -9.6946 0.0026 17 6 2.5292 -10.8434 0.0034 18 8 3.7416 -10.8111 0.0030 19 6 1.8108 -12.1681 0.0035 20 8 2.7680 -13.2291 0.0049 21 6 2.2810 -14.5015 0.0058 22 6 3.1053 -15.6165 0.0067 23 6 2.4656 -16.7875 0.0069 24 16 0.7286 -16.5129 0.0129 25 6 0.9722 -14.7711 0.0048 26 1 -0.4850 0.8401 -0.0004 27 1 0.3533 -2.3906 0.0005 28 1 0.6179 -4.9208 -0.8896 29 1 0.6161 -4.9204 0.8904 30 1 2.8337 -5.9124 -0.7791 31 1 0.8734 -7.3455 -0.8884 32 1 0.8727 -7.3450 0.8916 33 1 3.1477 -8.3322 0.8920 34 1 3.1478 -8.3325 -0.8880 35 1 0.8548 -9.7204 0.0025 36 1 1.1862 -12.2429 -0.8867 37 1 1.1855 -12.2422 0.8932 38 1 4.1828 -15.5428 0.0074 39 1 2.9422 -17.7567 0.0079 40 1 0.1845 -14.0323 0.0041 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147935321.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:17 Heat of formation + Delta-G solvation = -64.790602 kcal Electronic energy + Delta-G solvation = -23179.346346 eV Core-core repulsion = 19314.772946 eV Total energy + Delta-G solvation = -3864.573400 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.65086 -39.48395 -38.34430 -36.57551 -36.13782 -34.46611 -33.78649 -31.27404 -30.42567 -29.55305 -28.45465 -25.96635 -24.24867 -23.65803 -22.20012 -20.96815 -20.19616 -19.31789 -18.78735 -17.95296 -17.59419 -17.16194 -16.89614 -16.17027 -16.10133 -15.83016 -15.05430 -14.76480 -14.56664 -14.49983 -14.09598 -14.00464 -13.70176 -13.47566 -13.23987 -13.17123 -13.11198 -12.44101 -12.30539 -11.96706 -11.57234 -11.51290 -11.50507 -11.40757 -11.36574 -11.02771 -10.45404 -10.24108 -10.20371 -9.52252 -9.40657 -9.33113 -8.53913 -8.47802 -8.17059 -7.98878 -6.43929 -3.84847 0.49254 1.12951 1.48814 2.17344 2.19974 2.27663 3.19256 3.22956 3.25121 3.30012 3.87327 4.06395 4.19055 4.36205 4.40596 4.49309 4.54029 4.77700 4.79263 4.88451 4.92808 5.13721 5.23399 5.31701 5.40972 5.45127 5.67801 5.69956 5.74583 5.83606 5.90099 6.03818 6.21734 6.71044 7.02292 7.11667 7.52031 7.53287 7.83097 8.03513 8.58496 9.15515 9.51190 10.02576 10.73645 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.057415 B = 0.001336 C = 0.001308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.561797 B =20952.679890 C =21407.161449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.439 3.561 11 O -0.582 6.582 12 C 0.053 3.947 13 N -0.666 5.666 14 C 0.050 3.950 15 C 0.121 3.879 16 N -0.724 5.724 17 C 0.515 3.485 18 O -0.512 6.512 19 C 0.044 3.956 20 O -0.278 6.278 21 C 0.118 3.882 22 C -0.140 4.140 23 C -0.186 4.186 24 S 0.119 5.881 25 C -0.328 4.328 26 H 0.272 0.728 27 H 0.392 0.608 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.353 0.647 31 H 0.033 0.967 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.401 0.599 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.153 0.847 39 H 0.174 0.826 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.288 -32.302 -0.893 32.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.178 4.178 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.431 4.431 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.224 3.776 11 O -0.466 6.466 12 C -0.080 4.080 13 N -0.299 5.299 14 C -0.080 4.080 15 C -0.002 4.002 16 N -0.379 5.379 17 C 0.299 3.701 18 O -0.386 6.386 19 C -0.035 4.035 20 O -0.191 6.191 21 C 0.062 3.938 22 C -0.172 4.172 23 C -0.321 4.321 24 S 0.379 5.621 25 C -0.464 4.464 26 H 0.082 0.918 27 H 0.225 0.775 28 H 0.063 0.937 29 H 0.106 0.894 30 H 0.173 0.827 31 H 0.052 0.948 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.235 0.765 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.170 0.830 39 H 0.191 0.809 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -4.670 -32.931 -0.205 33.261 hybrid contribution -0.224 1.829 -0.898 2.049 sum -4.894 -31.102 -1.103 31.504 Atomic orbital electron populations 1.69603 1.05949 1.28297 1.50474 1.25260 0.95634 0.99733 0.97209 0.85908 0.78765 0.80381 0.79123 1.19897 1.20966 1.19842 1.19670 0.93396 0.82226 1.47767 0.87921 1.41843 1.09183 1.04575 1.64286 1.19769 0.88403 0.84690 0.84717 1.90538 1.13715 1.87008 1.55356 1.21668 0.94196 0.90791 1.01332 1.59915 1.18842 0.99405 1.51732 1.22074 0.95485 0.89394 1.01092 1.21334 0.95003 0.80087 1.03788 1.45711 1.10385 1.05602 1.76179 1.19935 0.88080 0.84792 0.77342 1.90795 1.13512 1.87145 1.47128 1.22435 0.91594 0.85512 1.03938 1.86212 1.33059 1.10769 1.89045 1.17898 0.91026 0.85250 0.99648 1.19512 1.01904 0.89344 1.06444 1.25554 0.96841 1.01976 1.07761 1.84225 1.04754 0.99289 1.73786 1.25366 0.99004 1.00602 1.21428 0.91806 0.77456 0.93694 0.89444 0.82723 0.94848 0.90372 0.89880 0.91052 0.76481 0.88937 0.88894 0.82969 0.80891 0.81533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.27 13.05 55.50 0.72 -23.54 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 9 N -0.56 -14.06 5.29 -10.96 -0.06 -14.12 16 10 C 0.44 10.21 7.82 -10.99 -0.09 10.12 16 11 O -0.58 -15.75 15.78 5.54 0.09 -15.67 16 12 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 13 N -0.67 -10.17 6.13 -115.06 -0.70 -10.87 16 14 C 0.05 0.52 5.80 -3.83 -0.02 0.50 16 15 C 0.12 1.29 5.93 -4.04 -0.02 1.26 16 16 N -0.72 -5.87 5.56 -60.29 -0.33 -6.20 16 17 C 0.51 5.38 7.91 -10.99 -0.09 5.29 16 18 O -0.51 -8.02 16.50 -14.36 -0.24 -8.26 16 19 C 0.04 0.32 5.35 36.00 0.19 0.51 16 20 O -0.28 -2.93 9.74 -40.39 -0.39 -3.32 16 21 C 0.12 1.03 6.64 -41.04 -0.27 0.76 16 22 C -0.14 -1.07 10.17 -41.10 -0.42 -1.49 16 23 C -0.19 -1.07 11.22 29.05 0.33 -0.74 16 24 S 0.12 0.69 23.34 -107.50 -2.51 -1.82 16 25 C -0.33 -2.25 10.09 29.12 0.29 -1.95 16 26 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 27 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.35 5.62 8.43 -39.29 -0.33 5.29 16 31 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.40 1.81 8.47 -40.82 -0.35 1.46 16 36 H 0.09 0.43 7.86 -51.93 -0.41 0.02 16 37 H 0.09 0.43 7.86 -51.93 -0.41 0.03 16 38 H 0.15 1.04 8.06 -52.49 -0.42 0.61 16 39 H 0.17 0.53 8.06 -52.49 -0.42 0.11 16 40 H 0.17 0.78 7.02 -52.49 -0.37 0.41 16 LS Contribution 366.50 15.07 5.52 5.52 Total: -1.00 -35.60 366.50 -8.37 -43.97 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -5.08 Total: 11.25 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -0.37 Total: 7.14 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: -0.37 Total: -54.74 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.54 Total: -27.25 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -2.51 Total: -1.82 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.60 -8.37 -43.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147935321.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.823 kcal (2) G-P(sol) polarization free energy of solvation -35.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds