Wall clock time and date at job start Fri Apr 10 2020 18:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86803 * 120.00061 * 2 1 4 4 H 1.48497 * 109.47012 * 239.99713 * 3 2 1 5 5 H 1.48497 * 109.46982 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47034 * 120.00002 * 3 2 1 7 7 C 1.38950 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99750 * 180.02562 * 7 2 1 9 9 N 1.37094 * 119.99807 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99957 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99987 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00067 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.47280 * 179.97438 * 12 10 9 14 14 C 1.46894 * 111.00144 * 179.97438 * 13 12 10 15 15 C 1.53003 * 109.47403 * 179.97438 * 14 13 12 16 16 N 1.46494 * 109.47652 * 179.97438 * 15 14 13 17 17 C 1.34773 * 120.00394 * 180.02562 * 16 15 14 18 18 O 1.21284 * 120.00053 * 359.97438 * 17 16 15 19 19 C 1.50695 * 120.00003 * 180.02562 * 17 16 15 20 20 O 1.42905 * 109.47208 * 180.02562 * 19 17 16 21 21 C 1.36232 * 117.00188 * 179.97438 * 20 19 17 22 22 C 1.38668 * 122.58400 * 179.97438 * 21 20 19 23 23 C 1.33433 * 114.88144 * 180.02562 * 22 21 20 24 24 S 1.75865 * 109.66167 * 359.75827 * 23 22 21 25 25 C 1.33630 * 122.58638 * 0.02643 * 21 20 19 26 26 H 0.97003 * 119.99757 * 0.02562 * 1 2 3 27 27 H 0.97003 * 120.00461 * 359.97438 * 9 7 2 28 28 H 1.09001 * 109.47338 * 59.99265 * 12 10 9 29 29 H 1.09003 * 109.46764 * 299.99381 * 12 10 9 30 30 H 1.00902 * 111.00066 * 303.95488 * 13 12 10 31 31 H 1.09005 * 109.47492 * 59.99833 * 14 13 12 32 32 H 1.09001 * 109.47301 * 299.99671 * 14 13 12 33 33 H 1.09005 * 109.46732 * 59.99614 * 15 14 13 34 34 H 1.09005 * 109.47311 * 300.00258 * 15 14 13 35 35 H 0.97005 * 119.99361 * 0.02562 * 16 15 14 36 36 H 1.08997 * 109.47783 * 59.99584 * 19 17 16 37 37 H 1.09001 * 109.47298 * 299.99616 * 19 17 16 38 38 H 1.07996 * 122.55913 * 0.04163 * 22 21 20 39 39 H 1.08000 * 125.16852 * 180.02562 * 23 22 21 40 40 H 1.08002 * 125.19356 * 359.94691 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1019 1.6963 -1.2124 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2437 -4.8629 0.0010 13 7 2.1982 -5.9795 0.0017 14 6 1.4979 -7.2707 0.0018 15 6 2.5228 -8.4068 0.0019 16 7 1.8245 -9.6946 0.0026 17 6 2.5292 -10.8434 0.0034 18 8 3.7416 -10.8111 0.0030 19 6 1.8108 -12.1681 0.0035 20 8 2.7680 -13.2291 0.0049 21 6 2.2810 -14.5015 0.0058 22 6 3.1053 -15.6165 0.0067 23 6 2.4656 -16.7875 0.0069 24 16 0.7286 -16.5129 0.0129 25 6 0.9722 -14.7711 0.0048 26 1 -0.4850 0.8401 -0.0004 27 1 0.3533 -2.3906 0.0005 28 1 0.6179 -4.9208 -0.8896 29 1 0.6161 -4.9204 0.8904 30 1 2.8337 -5.9124 -0.7791 31 1 0.8734 -7.3455 -0.8884 32 1 0.8727 -7.3450 0.8916 33 1 3.1477 -8.3322 0.8920 34 1 3.1478 -8.3325 -0.8880 35 1 0.8548 -9.7204 0.0025 36 1 1.1862 -12.2429 -0.8867 37 1 1.1855 -12.2422 0.8932 38 1 4.1828 -15.5428 0.0074 39 1 2.9422 -17.7567 0.0079 40 1 0.1845 -14.0323 0.0041 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147935321.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:17 Heat of formation + Delta-G solvation = -93.508336 kcal Electronic energy + Delta-G solvation = -23180.591640 eV Core-core repulsion = 19314.772946 eV Total energy + Delta-G solvation = -3865.818694 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.33217 -40.27250 -40.08511 -37.54434 -36.84987 -36.00406 -35.27640 -33.27001 -31.35238 -30.05011 -29.37254 -27.47546 -25.60202 -24.45642 -23.10556 -21.76642 -21.10018 -20.73084 -19.92061 -19.32002 -18.32118 -17.93950 -17.56568 -17.54844 -17.11213 -16.90809 -16.49854 -16.02416 -15.90240 -15.37778 -15.26366 -15.02197 -14.85516 -14.54914 -14.21619 -14.07125 -13.67316 -13.65138 -13.50772 -13.31490 -12.93548 -12.82551 -12.59978 -12.44020 -12.41328 -12.12191 -11.97285 -11.83580 -11.50438 -11.09486 -10.36494 -10.24600 -10.01499 -9.79679 -9.37827 -8.96621 -8.46726 -5.95345 0.01891 0.68065 1.00851 1.40070 1.42303 1.43235 1.51425 1.53789 1.72262 2.05655 2.29408 2.58827 3.04060 3.20833 3.49522 3.65908 3.88320 3.96045 4.05555 4.06877 4.14109 4.32216 4.35506 4.45383 4.46409 4.51315 4.62010 4.88270 4.92737 4.93085 4.96240 5.22658 5.25139 5.41031 5.84751 6.07249 6.16109 6.32242 6.45303 6.60478 7.11557 7.12889 7.56441 8.12314 8.70238 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.057415 B = 0.001336 C = 0.001308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.561797 B =20952.679890 C =21407.161449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.010 4.010 3 Si 0.991 3.009 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.337 4.337 8 H 0.077 0.923 9 N -0.571 5.571 10 C 0.434 3.566 11 O -0.626 6.626 12 C 0.069 3.931 13 N -0.688 5.688 14 C 0.059 3.941 15 C 0.128 3.872 16 N -0.704 5.704 17 C 0.511 3.489 18 O -0.575 6.575 19 C 0.047 3.953 20 O -0.313 6.313 21 C 0.094 3.906 22 C -0.170 4.170 23 C -0.179 4.179 24 S 0.141 5.859 25 C -0.328 4.328 26 H 0.278 0.722 27 H 0.398 0.602 28 H 0.074 0.926 29 H 0.110 0.890 30 H 0.346 0.654 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.423 0.577 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.149 0.851 39 H 0.198 0.802 40 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.879 -33.461 -0.983 34.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.210 4.210 3 Si 0.815 3.185 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.467 4.467 8 H 0.095 0.905 9 N -0.209 5.209 10 C 0.221 3.779 11 O -0.513 6.513 12 C -0.063 4.063 13 N -0.321 5.321 14 C -0.070 4.070 15 C 0.003 3.997 16 N -0.359 5.359 17 C 0.297 3.703 18 O -0.453 6.453 19 C -0.031 4.031 20 O -0.228 6.228 21 C 0.038 3.962 22 C -0.201 4.201 23 C -0.314 4.314 24 S 0.402 5.598 25 C -0.464 4.464 26 H 0.087 0.913 27 H 0.232 0.768 28 H 0.092 0.908 29 H 0.128 0.872 30 H 0.164 0.836 31 H 0.078 0.922 32 H 0.115 0.885 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.261 0.739 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.166 0.834 39 H 0.215 0.785 40 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -7.354 -34.113 -0.293 34.898 hybrid contribution 0.554 2.088 -0.866 2.328 sum -6.800 -32.024 -1.158 32.759 Atomic orbital electron populations 1.69655 1.06733 1.29370 1.50145 1.25994 0.96532 1.02273 0.96182 0.85017 0.77807 0.76797 0.78895 1.19772 1.19368 1.19860 1.19631 0.92716 0.84166 1.50183 0.90472 1.41903 1.09360 1.04629 1.64971 1.20972 0.88285 0.86352 0.82259 1.90507 1.16071 1.88002 1.56715 1.21521 0.93701 0.87422 1.03677 1.59880 1.19410 1.00936 1.51882 1.22073 0.95132 0.86617 1.03165 1.21082 0.95099 0.81484 1.02007 1.45475 1.11378 1.04199 1.74845 1.20629 0.87504 0.86312 0.75860 1.90769 1.16332 1.88062 1.50170 1.22590 0.90878 0.82841 1.06792 1.86150 1.34972 1.11940 1.89691 1.18117 0.91995 0.84746 1.01363 1.19688 1.02111 0.90075 1.08224 1.25882 0.97096 1.02438 1.06027 1.84166 1.04331 0.98409 1.72935 1.25685 0.98806 1.01816 1.20062 0.91259 0.76821 0.90819 0.87196 0.83564 0.92157 0.88539 0.92333 0.92490 0.73881 0.85811 0.85858 0.83377 0.78498 0.79352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.80 13.05 21.66 0.28 -48.51 16 2 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 3 Si 0.99 42.71 29.55 68.60 2.03 44.74 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 7 C -0.34 -19.09 9.68 84.04 0.81 -18.28 16 8 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 9 N -0.57 -28.80 5.29 -306.99 -1.62 -30.42 16 10 C 0.43 20.23 7.82 87.66 0.69 20.92 16 11 O -0.63 -34.78 15.78 -3.08 -0.05 -34.83 16 12 C 0.07 2.17 6.17 85.56 0.53 2.70 16 13 N -0.69 -20.14 6.13 -517.93 -3.17 -23.31 16 14 C 0.06 1.09 5.80 86.31 0.50 1.59 16 15 C 0.13 2.63 5.93 86.38 0.51 3.14 16 16 N -0.70 -10.14 5.56 -463.06 -2.57 -12.71 16 17 C 0.51 10.37 7.91 87.66 0.69 11.06 16 18 O -0.57 -18.79 16.50 15.99 0.26 -18.52 16 19 C 0.05 0.59 5.35 71.23 0.38 0.97 16 20 O -0.31 -6.56 9.74 -77.17 -0.75 -7.32 16 21 C 0.09 1.58 6.64 21.33 0.14 1.72 16 22 C -0.17 -2.58 10.17 21.28 0.22 -2.36 16 23 C -0.18 -1.82 11.22 66.73 0.75 -1.07 16 24 S 0.14 1.34 23.34 -56.49 -1.32 0.02 16 25 C -0.33 -3.80 10.09 66.77 0.67 -3.13 16 26 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 27 H 0.40 18.77 7.90 -92.71 -0.73 18.04 16 28 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 30 H 0.35 10.95 8.43 -89.69 -0.76 10.19 16 31 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.42 2.36 8.47 -92.70 -0.79 1.57 16 36 H 0.12 0.76 7.86 -2.39 -0.02 0.74 16 37 H 0.12 0.78 7.86 -2.39 -0.02 0.76 16 38 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 39 H 0.20 0.84 8.06 -2.91 -0.02 0.81 16 40 H 0.19 1.12 7.02 -2.91 -0.02 1.10 16 Total: -1.00 -80.92 366.50 -1.72 -82.64 By element: Atomic # 1 Polarization: 32.18 SS G_CDS: -1.17 Total: 31.02 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: 6.36 Total: 17.21 kcal Atomic # 7 Polarization: -107.88 SS G_CDS: -7.08 Total: -114.96 kcal Atomic # 8 Polarization: -60.13 SS G_CDS: -0.54 Total: -60.67 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -1.32 Total: 0.02 kcal Total: -80.92 -1.72 -82.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147935321.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.868 kcal (2) G-P(sol) polarization free energy of solvation -80.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds