Wall clock time and date at job start Fri Apr 10 2020 18:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 112.74246 * 2 1 4 4 C 1.52365 * 113.24222 * 130.95223 * 2 1 3 5 5 H 1.09000 * 113.96030 * 0.98186 * 4 2 1 6 6 N 1.46498 * 113.97408 * 228.94472 * 4 2 1 7 7 C 1.38373 * 119.99835 * 160.29038 * 6 4 2 8 8 C 1.39707 * 119.43359 * 0.02562 * 7 6 4 9 9 C 1.36560 * 119.49500 * 179.97438 * 8 7 6 10 10 C 1.41325 * 118.40716 * 0.02562 * 9 8 7 11 11 C 1.41204 * 120.56662 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99704 * 203.64468 * 11 10 9 13 13 C 1.39872 * 120.00182 * 23.63335 * 11 10 9 14 14 N 1.30900 * 120.00189 * 17.63730 * 13 11 10 15 15 Si 1.86796 * 119.99834 * 197.64070 * 13 11 10 16 16 H 1.48496 * 109.47657 * 60.00158 * 15 13 11 17 17 H 1.48504 * 109.47153 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.47201 * 299.99664 * 15 13 11 19 19 C 1.40750 * 118.86173 * 359.97438 * 10 9 8 20 20 N 1.31486 * 120.36669 * 359.73071 * 19 10 9 21 21 C 1.49987 * 84.87559 * 114.96221 * 4 2 1 22 22 O 1.21285 * 133.23768 * 180.02562 * 21 4 2 23 23 N 1.33833 * 93.51590 * 359.75480 * 21 4 2 24 24 S 1.65599 * 133.17662 * 180.22722 * 23 21 4 25 25 O 1.42108 * 106.40191 * 203.53700 * 24 23 21 26 26 O 1.42100 * 106.40374 * 336.45262 * 24 23 21 27 27 O 1.52193 * 107.22003 * 89.99560 * 24 23 21 28 28 H 1.08996 * 109.47137 * 171.25112 * 1 2 3 29 29 H 1.09001 * 109.46959 * 291.24928 * 1 2 3 30 30 H 1.08991 * 109.47073 * 51.24850 * 1 2 3 31 31 H 0.97001 * 120.00550 * 340.28887 * 6 4 2 32 32 H 1.08001 * 120.25016 * 0.02562 * 8 7 6 33 33 H 1.07997 * 120.79077 * 179.97438 * 9 8 7 34 34 H 0.97000 * 119.99956 * 179.97438 * 14 13 11 35 35 H 1.08004 * 119.81511 * 180.02562 * 19 10 9 36 36 H 0.96707 * 113.99929 * 179.97438 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9513 1.0052 0.0000 4 6 2.1312 -0.9176 1.0574 5 1 1.3908 -1.4547 1.6502 6 7 3.1739 -0.2863 1.8700 7 6 3.5165 -0.8263 3.0971 8 6 2.8607 -1.9741 3.5493 9 6 3.1981 -2.5083 4.7599 10 6 4.2080 -1.8728 5.5173 11 6 4.5924 -2.3861 6.7753 12 1 5.0533 -1.7372 7.5053 13 6 4.3761 -3.7349 7.0761 14 7 4.1485 -4.5919 6.1133 15 14 4.4118 -4.3130 8.8520 16 1 3.3638 -3.6004 9.6259 17 1 4.1564 -5.7751 8.9019 18 1 5.7444 -4.0236 9.4401 19 6 4.8240 -0.7196 4.9961 20 7 4.4666 -0.2482 3.8218 21 6 2.6576 -1.6967 -0.1112 22 8 3.3268 -2.7039 -0.2046 23 7 2.1104 -0.8726 -1.0125 24 16 2.0981 -0.8517 -2.6683 25 8 1.8563 0.4954 -3.0509 26 8 3.2405 -1.5854 -3.0875 27 8 0.8843 -1.6511 -3.1200 28 1 -0.3633 -1.0157 -0.1563 29 1 -0.3633 0.3725 0.9578 30 1 -0.3633 0.6432 -0.8014 31 1 3.6243 0.5101 1.5479 32 1 2.0933 -2.4357 2.9456 33 1 2.7045 -3.3947 5.1299 34 1 3.9988 -5.5273 6.3219 35 1 5.5978 -0.2219 5.5617 36 1 0.7819 -1.7019 -4.0803 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167855586.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:25 Heat of formation + Delta-G solvation = -84.245378 kcal Electronic energy + Delta-G solvation = -25376.749559 eV Core-core repulsion = 21375.499442 eV Total energy + Delta-G solvation = -4001.250117 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.077 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.78349 -38.79028 -38.50198 -37.83449 -37.12006 -36.39155 -34.84945 -33.40500 -30.89332 -30.65284 -29.34392 -27.53093 -24.76142 -23.05627 -22.61976 -21.80103 -21.05025 -19.93071 -18.89827 -18.09039 -17.68928 -17.34624 -16.89570 -16.35713 -16.27895 -16.12982 -15.13883 -14.91225 -14.24386 -14.00929 -13.73035 -13.64479 -13.41986 -13.16326 -13.13609 -12.82658 -12.71135 -12.60363 -12.55788 -12.45633 -12.14811 -11.90918 -11.63020 -11.39604 -11.26852 -11.11368 -10.75840 -10.55183 -10.49990 -9.86955 -9.47564 -8.88863 -8.31983 -8.11681 -6.99165 -6.72836 -4.27942 -0.04556 1.86287 2.38807 2.66623 2.73331 2.93710 3.05897 3.08229 3.18992 3.50383 3.67449 3.88709 3.92516 4.32757 4.58177 4.64007 4.76048 4.88409 5.23678 5.31755 5.42164 5.51828 5.66902 5.69676 5.77502 6.01264 6.32740 6.48681 6.78252 7.09911 7.22875 7.27094 7.46933 7.58978 7.83423 8.07583 8.25353 8.50899 8.76413 8.79887 9.59587 10.15795 Molecular weight = 327.08amu Principal moments of inertia in cm(-1) A = 0.028421 B = 0.002775 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.939292 B =10086.123781 C =10344.384475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.130 3.870 3 H 0.124 0.876 4 C 0.138 3.862 5 H 0.143 0.857 6 N -0.711 5.711 7 C 0.259 3.741 8 C -0.191 4.191 9 C -0.097 4.097 10 C 0.038 3.962 11 C -0.454 4.454 12 H 0.080 0.920 13 C 0.074 3.926 14 N -0.798 5.798 15 Si 0.910 3.090 16 H -0.264 1.264 17 H -0.279 1.279 18 H -0.265 1.265 19 C 0.008 3.992 20 N -0.510 5.510 21 C 0.527 3.473 22 O -0.439 6.439 23 N -0.959 5.959 24 S 2.804 3.196 25 O -0.973 6.973 26 O -0.963 6.963 27 O -0.902 6.902 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.399 0.601 32 H 0.097 0.903 33 H 0.129 0.871 34 H 0.282 0.718 35 H 0.129 0.871 36 H 0.463 0.537 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.435 6.032 -13.480 18.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.026 3.974 3 H 0.142 0.858 4 C 0.021 3.979 5 H 0.160 0.840 6 N -0.350 5.350 7 C 0.028 3.972 8 C -0.215 4.215 9 C -0.124 4.124 10 C 0.033 3.967 11 C -0.485 4.485 12 H 0.098 0.902 13 C -0.144 4.144 14 N -0.424 5.424 15 Si 0.735 3.265 16 H -0.189 1.189 17 H -0.204 1.204 18 H -0.190 1.190 19 C -0.151 4.151 20 N -0.224 5.224 21 C 0.309 3.691 22 O -0.302 6.302 23 N -0.812 5.812 24 S 2.810 3.190 25 O -0.965 6.965 26 O -0.955 6.955 27 O -0.769 6.769 28 H 0.091 0.909 29 H 0.113 0.887 30 H 0.093 0.907 31 H 0.234 0.766 32 H 0.115 0.885 33 H 0.147 0.853 34 H 0.093 0.907 35 H 0.147 0.853 36 H 0.333 0.667 Dipole moment (debyes) X Y Z Total from point charges -10.635 5.786 -14.230 18.684 hybrid contribution -0.195 -0.982 0.374 1.069 sum -10.831 4.804 -13.856 18.231 Atomic orbital electron populations 1.22139 0.91618 1.03891 1.04900 1.22457 0.96128 0.96175 0.82676 0.85837 1.22371 0.91923 0.92484 0.91107 0.83972 1.43077 1.42149 1.31916 1.17863 1.17565 0.97889 0.94135 0.87571 1.20793 1.03600 0.97820 0.99243 1.21305 0.96822 1.00398 0.93852 1.18393 0.91549 0.92638 0.94100 1.19351 1.35503 0.94222 0.99407 0.90217 1.25898 0.92594 0.96691 0.99180 1.69813 1.34853 1.04065 1.33651 0.86332 0.79903 0.77783 0.82498 1.18867 1.20421 1.19006 1.22167 1.02050 0.99119 0.91759 1.66429 1.14281 1.33489 1.08176 1.22882 0.76999 0.82066 0.87167 1.90839 1.33381 1.21785 1.84181 1.59225 1.60107 1.36968 1.24893 1.01223 0.72141 0.72959 0.72634 1.93683 1.84479 1.37703 1.80624 1.93743 1.50412 1.72163 1.79202 1.85523 1.69473 1.83965 1.37960 0.90944 0.88721 0.90723 0.76588 0.88454 0.85309 0.90731 0.85321 0.66748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.07 9.82 37.16 0.36 -0.71 16 2 C 0.13 1.20 4.73 -73.83 -0.35 0.85 16 3 H 0.12 0.93 8.03 -51.93 -0.42 0.52 16 4 C 0.14 1.80 3.75 -71.49 -0.27 1.53 16 5 H 0.14 1.67 6.12 -51.93 -0.32 1.35 16 6 N -0.71 -11.62 5.52 -57.03 -0.31 -11.94 16 7 C 0.26 5.54 7.64 -155.12 -1.19 4.36 16 8 C -0.19 -4.21 9.20 -39.64 -0.36 -4.57 16 9 C -0.10 -2.41 8.74 -39.01 -0.34 -2.75 16 10 C 0.04 0.98 5.59 -106.65 -0.60 0.38 16 11 C -0.45 -11.55 9.07 -37.85 -0.34 -11.89 16 12 H 0.08 1.93 7.90 -52.48 -0.41 1.51 16 13 C 0.07 1.79 5.17 -17.34 -0.09 1.70 16 14 N -0.80 -20.13 10.92 55.54 0.61 -19.52 16 15 Si 0.91 18.11 29.59 -169.99 -5.03 13.08 16 16 H -0.26 -5.19 7.11 56.52 0.40 -4.78 16 17 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 18 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 19 C 0.01 0.19 10.97 -16.75 -0.18 0.00 16 20 N -0.51 -11.90 10.37 -11.79 -0.12 -12.02 16 21 C 0.53 8.06 9.03 -16.90 -0.15 7.91 16 22 O -0.44 -8.76 18.03 5.55 0.10 -8.66 16 23 N -0.96 -11.10 3.52 -67.96 -0.24 -11.34 16 24 S 2.80 29.06 6.81 -107.50 -0.73 28.33 16 25 O -0.97 -11.18 18.05 -66.81 -1.21 -12.39 16 26 O -0.96 -14.21 17.96 -66.81 -1.20 -15.41 16 27 O -0.90 -5.95 13.52 -67.36 -0.91 -6.86 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.40 5.90 8.75 -40.82 -0.36 5.54 16 32 H 0.10 1.85 6.07 -52.49 -0.32 1.53 16 33 H 0.13 3.26 6.19 -52.49 -0.32 2.93 16 34 H 0.28 6.51 8.30 -40.82 -0.34 6.18 16 35 H 0.13 2.91 8.06 -52.48 -0.42 2.48 16 36 H 0.46 0.37 9.03 67.38 0.61 0.98 16 LS Contribution 332.19 15.07 5.01 5.01 Total: -1.00 -36.55 332.19 -9.92 -46.47 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -2.37 Total: 8.43 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -3.51 Total: -3.18 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -0.07 Total: -54.81 kcal Atomic # 8 Polarization: -40.10 SS G_CDS: -3.22 Total: -43.31 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.08 kcal Atomic # 16 Polarization: 29.06 SS G_CDS: -0.73 Total: 28.33 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -36.55 -9.92 -46.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167855586.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.779 kcal (2) G-P(sol) polarization free energy of solvation -36.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds