Wall clock time and date at job start Fri Apr 10 2020 18:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 117.00368 * 2 1 4 4 O 1.20826 * 119.99291 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00270 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.46898 * 180.02562 * 5 3 2 7 7 S 1.81402 * 109.46664 * 180.02562 * 6 5 3 8 8 O 1.42101 * 110.54283 * 68.37788 * 7 6 5 9 9 O 1.42100 * 110.54406 * 291.62368 * 7 6 5 10 10 N 1.65600 * 104.44686 * 180.02562 * 7 6 5 11 11 C 1.36941 * 119.99967 * 263.22582 * 10 7 6 12 12 H 1.07993 * 119.99995 * 126.48238 * 11 10 7 13 13 C 1.38812 * 119.99681 * 306.47162 * 11 10 7 14 14 N 1.31620 * 119.99636 * 155.44600 * 13 11 10 15 15 Si 1.86802 * 120.00161 * 335.45531 * 13 11 10 16 16 H 1.48502 * 109.47215 * 93.85435 * 15 13 11 17 17 H 1.48506 * 109.47000 * 213.85038 * 15 13 11 18 18 H 1.48498 * 109.46967 * 333.84954 * 15 13 11 19 19 C 1.46501 * 120.00180 * 83.22377 * 10 7 6 20 20 C 1.50707 * 109.47169 * 259.65940 * 19 10 7 21 21 C 1.38235 * 120.00260 * 94.33159 * 20 19 10 22 22 C 1.38224 * 119.99990 * 179.97438 * 21 20 19 23 23 C 1.38233 * 120.00460 * 359.97438 * 22 21 20 24 24 C 1.38238 * 119.99468 * 0.27391 * 23 22 21 25 25 C 1.38230 * 119.99769 * 274.31650 * 20 19 10 26 26 H 1.08997 * 109.47402 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46963 * 299.99701 * 1 2 3 28 28 H 1.09004 * 109.47136 * 59.99741 * 1 2 3 29 29 H 1.08997 * 109.46733 * 59.99939 * 5 3 2 30 30 H 1.09000 * 109.46927 * 300.00259 * 5 3 2 31 31 H 1.09006 * 109.46940 * 60.00331 * 6 5 3 32 32 H 1.08991 * 109.47312 * 299.99907 * 6 5 3 33 33 H 0.97005 * 119.99994 * 180.02562 * 14 13 11 34 34 H 1.08995 * 109.47416 * 139.65645 * 19 10 7 35 35 H 1.09000 * 109.47096 * 19.65276 * 19 10 7 36 36 H 1.07997 * 119.99736 * 359.97438 * 21 20 19 37 37 H 1.08006 * 119.99975 * 180.02562 * 22 21 20 38 38 H 1.08003 * 120.00905 * 180.02562 * 23 22 21 39 39 H 1.08004 * 119.99865 * 179.72458 * 24 23 22 40 40 H 1.08008 * 120.00154 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7421 0.0011 7 16 5.8117 2.8369 0.0010 8 8 6.3352 2.3738 -1.2362 9 8 6.3354 2.3728 1.2378 10 7 6.1405 4.4599 0.0023 11 6 6.4134 5.1042 -1.1748 12 1 5.8526 5.9848 -1.4510 13 6 7.4110 4.6254 -2.0129 14 7 7.3749 4.8960 -3.3005 15 14 8.8047 3.5968 -1.3134 16 1 8.4670 2.1560 -1.4372 17 1 10.0538 3.8788 -2.0654 18 1 9.0012 3.9380 0.1185 19 6 6.1393 5.2066 1.2628 20 6 4.8370 5.9519 1.4040 21 6 3.7890 5.3856 2.1053 22 6 2.5948 6.0695 2.2352 23 6 2.4486 7.3199 1.6642 24 6 3.4950 7.8840 0.9585 25 6 4.6907 7.2019 0.8324 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 3.9564 0.7805 -0.8891 30 1 3.9557 0.7809 0.8908 31 1 3.6101 3.2359 0.8911 32 1 3.6108 3.2364 -0.8888 33 1 8.0718 4.5612 -3.8862 34 1 6.9663 5.9165 1.2654 35 1 6.2530 4.5131 2.0960 36 1 3.9033 4.4089 2.5517 37 1 1.7761 5.6272 2.7835 38 1 1.5157 7.8545 1.7660 39 1 3.3793 8.8590 0.5086 40 1 5.5098 7.6447 0.2849 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188372604.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:43 Heat of formation + Delta-G solvation = -117.008362 kcal Electronic energy + Delta-G solvation = -26791.601817 eV Core-core repulsion = 22892.471334 eV Total energy + Delta-G solvation = -3899.130483 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.102 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.35202 -38.91787 -36.52909 -35.93391 -35.69716 -34.67401 -32.93792 -32.51927 -30.61140 -30.49901 -28.02710 -26.16863 -24.72989 -23.38329 -22.17589 -20.86844 -20.58904 -18.97679 -17.97988 -17.17864 -16.69499 -16.64847 -16.28518 -15.73129 -15.61981 -15.10039 -14.73049 -14.53823 -14.51501 -14.00136 -13.53090 -13.29875 -13.09597 -13.01104 -12.75645 -12.58820 -12.43356 -12.09958 -11.86171 -11.60525 -11.51868 -11.42638 -11.11737 -10.90951 -10.82477 -10.72665 -10.63200 -10.51946 -10.30826 -10.24723 -10.09296 -9.36518 -8.87029 -8.52520 -8.36014 -7.94197 -6.68303 -4.32598 1.34836 1.74282 1.80392 2.28678 2.76829 3.28631 3.41332 3.51303 3.83308 4.24945 4.31796 4.73858 4.83088 4.84643 5.01054 5.02063 5.09548 5.19102 5.23316 5.26699 5.35934 5.38990 5.44947 5.50807 5.54839 5.77549 5.88276 6.03429 6.09099 6.30415 6.37725 6.40290 6.44508 6.47503 6.80094 6.83496 6.87715 7.14646 7.39624 7.56201 7.81794 8.08080 8.83283 8.97372 10.32134 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.009501 B = 0.006609 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2946.356482 B = 4235.627510 C = 6253.355697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.464 3.536 4 O -0.498 6.498 5 C -0.099 4.099 6 C -0.643 4.643 7 S 2.440 3.560 8 O -0.950 6.950 9 O -1.000 7.000 10 N -0.819 5.819 11 C -0.257 4.257 12 H 0.096 0.904 13 C 0.102 3.898 14 N -0.802 5.802 15 Si 0.858 3.142 16 H -0.236 1.236 17 H -0.285 1.285 18 H -0.257 1.257 19 C 0.157 3.843 20 C -0.091 4.091 21 C -0.119 4.119 22 C -0.122 4.122 23 C -0.128 4.128 24 C -0.125 4.125 25 C -0.091 4.091 26 H 0.099 0.901 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.126 0.874 33 H 0.285 0.715 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.766 -1.248 7.472 11.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.281 6.281 3 C 0.306 3.694 4 O -0.385 6.385 5 C -0.138 4.138 6 C -0.761 4.761 7 S 2.545 3.455 8 O -0.938 6.938 9 O -0.990 6.990 10 N -0.641 5.641 11 C -0.408 4.408 12 H 0.114 0.886 13 C -0.118 4.118 14 N -0.436 5.436 15 Si 0.682 3.318 16 H -0.161 1.161 17 H -0.212 1.212 18 H -0.181 1.181 19 C 0.031 3.969 20 C -0.093 4.093 21 C -0.138 4.138 22 C -0.140 4.140 23 C -0.147 4.147 24 C -0.143 4.143 25 C -0.110 4.110 26 H 0.117 0.883 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.130 0.870 30 H 0.127 0.873 31 H 0.136 0.864 32 H 0.144 0.856 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.135 0.865 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.480 -1.940 7.475 11.470 hybrid contribution -0.585 -0.285 -0.039 0.652 sum -9.065 -2.225 7.437 11.934 Atomic orbital electron populations 1.23232 0.76771 1.03421 1.02505 1.86526 1.23196 1.33898 1.84481 1.23877 0.92160 0.81144 0.72201 1.90656 1.66944 1.36271 1.44588 1.21097 0.88533 0.98076 1.06050 1.31123 1.35255 0.98896 1.10834 1.14872 0.78106 0.78353 0.74158 1.93464 1.75387 1.79917 1.45080 1.93355 1.77606 1.82176 1.45847 1.53108 1.74485 1.26515 1.10000 1.18917 1.15381 1.11033 0.95469 0.88593 1.25843 0.97425 0.93983 0.94550 1.69826 1.31956 1.38584 1.03255 0.87125 0.80348 0.83884 0.80413 1.16073 1.21191 1.18118 1.20361 0.93770 0.95864 0.86947 1.20568 0.97013 0.95147 0.96549 1.21090 0.93408 0.99537 0.99744 1.21007 0.97244 0.95247 1.00511 1.21033 0.98595 0.95957 0.99078 1.21128 0.93750 0.99963 0.99453 1.21150 0.97714 0.94406 0.97694 0.88264 0.92031 0.91940 0.86952 0.87306 0.86390 0.85594 0.90486 0.89132 0.89789 0.86539 0.86783 0.86862 0.86529 0.85342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 101.05 1.07 1.43 16 2 O -0.36 -5.14 10.57 -39.27 -0.41 -5.56 16 3 C 0.46 7.67 7.96 36.01 0.29 7.96 16 4 O -0.50 -9.41 15.73 -18.75 -0.29 -9.70 16 5 C -0.10 -1.64 5.82 -27.88 -0.16 -1.81 16 6 C -0.64 -12.33 5.47 37.16 0.20 -12.13 16 7 S 2.44 55.35 4.37 -107.50 -0.47 54.88 16 8 O -0.95 -24.52 12.31 -57.54 -0.71 -25.22 16 9 O -1.00 -23.57 16.69 -57.54 -0.96 -24.53 16 10 N -0.82 -18.26 2.03 -61.08 -0.12 -18.38 16 11 C -0.26 -6.29 9.39 -15.06 -0.14 -6.43 16 12 H 0.10 2.38 7.78 -52.49 -0.41 1.97 16 13 C 0.10 2.65 4.46 -17.43 -0.08 2.58 16 14 N -0.80 -21.44 13.97 55.49 0.78 -20.67 16 15 Si 0.86 21.28 25.44 -169.99 -4.32 16.95 16 16 H -0.24 -6.21 6.11 56.52 0.35 -5.86 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.26 -6.18 7.11 56.52 0.40 -5.78 16 19 C 0.16 2.95 5.77 -5.19 -0.03 2.92 16 20 C -0.09 -1.56 5.36 -104.62 -0.56 -2.12 16 21 C -0.12 -1.93 8.27 -39.59 -0.33 -2.25 16 22 C -0.12 -1.81 10.05 -39.59 -0.40 -2.20 16 23 C -0.13 -1.80 10.05 -39.58 -0.40 -2.20 16 24 C -0.12 -1.82 10.05 -39.58 -0.40 -2.21 16 25 C -0.09 -1.48 9.35 -39.59 -0.37 -1.85 16 26 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 28 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 29 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 30 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 31 H 0.12 2.15 5.74 -51.92 -0.30 1.85 16 32 H 0.13 2.54 8.10 -51.93 -0.42 2.12 16 33 H 0.28 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.09 1.58 8.09 -51.93 -0.42 1.16 16 35 H 0.08 1.51 6.82 -51.93 -0.35 1.16 16 36 H 0.12 1.78 7.33 -52.49 -0.38 1.40 16 37 H 0.11 1.46 8.06 -52.48 -0.42 1.03 16 38 H 0.11 1.31 8.06 -52.48 -0.42 0.88 16 39 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 40 H 0.13 2.02 8.06 -52.48 -0.42 1.60 16 LS Contribution 349.07 15.07 5.26 5.26 Total: -1.00 -31.25 349.07 -7.85 -39.09 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -5.28 Total: 6.19 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -1.31 Total: -18.32 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.65 Total: -39.05 kcal Atomic # 8 Polarization: -62.63 SS G_CDS: -2.38 Total: -65.01 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.32 Total: 16.95 kcal Atomic # 16 Polarization: 55.35 SS G_CDS: -0.47 Total: 54.88 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.25 -7.85 -39.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188372604.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.914 kcal (2) G-P(sol) polarization free energy of solvation -31.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds