Wall clock time and date at job start Fri Apr 10 2020 18:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 117.00368 * 2 1 4 4 O 1.20826 * 119.99291 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00270 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.46898 * 180.02562 * 5 3 2 7 7 S 1.81402 * 109.46664 * 180.02562 * 6 5 3 8 8 O 1.42101 * 110.54283 * 68.37788 * 7 6 5 9 9 O 1.42100 * 110.54406 * 291.62368 * 7 6 5 10 10 N 1.65600 * 104.44686 * 180.02562 * 7 6 5 11 11 C 1.36941 * 119.99967 * 263.22582 * 10 7 6 12 12 H 1.07993 * 119.99995 * 126.48238 * 11 10 7 13 13 C 1.38812 * 119.99681 * 306.47162 * 11 10 7 14 14 N 1.31620 * 119.99636 * 155.44600 * 13 11 10 15 15 Si 1.86802 * 120.00161 * 335.45531 * 13 11 10 16 16 H 1.48502 * 109.47215 * 93.85435 * 15 13 11 17 17 H 1.48506 * 109.47000 * 213.85038 * 15 13 11 18 18 H 1.48498 * 109.46967 * 333.84954 * 15 13 11 19 19 C 1.46501 * 120.00180 * 83.22377 * 10 7 6 20 20 C 1.50707 * 109.47169 * 259.65940 * 19 10 7 21 21 C 1.38235 * 120.00260 * 94.33159 * 20 19 10 22 22 C 1.38224 * 119.99990 * 179.97438 * 21 20 19 23 23 C 1.38233 * 120.00460 * 359.97438 * 22 21 20 24 24 C 1.38238 * 119.99468 * 0.27391 * 23 22 21 25 25 C 1.38230 * 119.99769 * 274.31650 * 20 19 10 26 26 H 1.08997 * 109.47402 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46963 * 299.99701 * 1 2 3 28 28 H 1.09004 * 109.47136 * 59.99741 * 1 2 3 29 29 H 1.08997 * 109.46733 * 59.99939 * 5 3 2 30 30 H 1.09000 * 109.46927 * 300.00259 * 5 3 2 31 31 H 1.09006 * 109.46940 * 60.00331 * 6 5 3 32 32 H 1.08991 * 109.47312 * 299.99907 * 6 5 3 33 33 H 0.97005 * 119.99994 * 180.02562 * 14 13 11 34 34 H 1.08995 * 109.47416 * 139.65645 * 19 10 7 35 35 H 1.09000 * 109.47096 * 19.65276 * 19 10 7 36 36 H 1.07997 * 119.99736 * 359.97438 * 21 20 19 37 37 H 1.08006 * 119.99975 * 180.02562 * 22 21 20 38 38 H 1.08003 * 120.00905 * 180.02562 * 23 22 21 39 39 H 1.08004 * 119.99865 * 179.72458 * 24 23 22 40 40 H 1.08008 * 120.00154 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7421 0.0011 7 16 5.8117 2.8369 0.0010 8 8 6.3352 2.3738 -1.2362 9 8 6.3354 2.3728 1.2378 10 7 6.1405 4.4599 0.0023 11 6 6.4134 5.1042 -1.1748 12 1 5.8526 5.9848 -1.4510 13 6 7.4110 4.6254 -2.0129 14 7 7.3749 4.8960 -3.3005 15 14 8.8047 3.5968 -1.3134 16 1 8.4670 2.1560 -1.4372 17 1 10.0538 3.8788 -2.0654 18 1 9.0012 3.9380 0.1185 19 6 6.1393 5.2066 1.2628 20 6 4.8370 5.9519 1.4040 21 6 3.7890 5.3856 2.1053 22 6 2.5948 6.0695 2.2352 23 6 2.4486 7.3199 1.6642 24 6 3.4950 7.8840 0.9585 25 6 4.6907 7.2019 0.8324 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 3.9564 0.7805 -0.8891 30 1 3.9557 0.7809 0.8908 31 1 3.6101 3.2359 0.8911 32 1 3.6108 3.2364 -0.8888 33 1 8.0718 4.5612 -3.8862 34 1 6.9663 5.9165 1.2654 35 1 6.2530 4.5131 2.0960 36 1 3.9033 4.4089 2.5517 37 1 1.7761 5.6272 2.7835 38 1 1.5157 7.8545 1.7660 39 1 3.3793 8.8590 0.5086 40 1 5.5098 7.6447 0.2849 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188372604.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:42 Heat of formation + Delta-G solvation = -136.441355 kcal Electronic energy + Delta-G solvation = -26792.444495 eV Core-core repulsion = 22892.471334 eV Total energy + Delta-G solvation = -3899.973161 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.102 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.58483 -40.15261 -37.90878 -37.73239 -37.37373 -36.64136 -34.43539 -34.26419 -32.02760 -31.68471 -29.03399 -27.73222 -26.15834 -25.03507 -23.37798 -22.14804 -21.87340 -20.81951 -19.58150 -18.72912 -18.03094 -17.88832 -17.56820 -17.47719 -17.20470 -16.76827 -16.29714 -15.98490 -15.79741 -15.50321 -15.13053 -14.64491 -14.61723 -14.27274 -14.16352 -14.01910 -13.75118 -13.46979 -13.42180 -13.23074 -13.09296 -12.94439 -12.82144 -12.57098 -12.31245 -12.21418 -12.06508 -11.99941 -11.87494 -11.73596 -11.71784 -11.21642 -10.78459 -9.81089 -9.68330 -9.54115 -8.60488 -6.25554 -0.46801 0.51862 0.61346 1.01717 1.30620 1.41243 1.50499 1.61781 2.08524 2.35881 2.85899 3.04004 3.08132 3.36760 3.43055 3.84218 3.87095 4.01735 4.02897 4.20616 4.24815 4.28363 4.28537 4.32399 4.42427 4.48384 4.66006 4.71457 4.80380 4.83489 4.91998 5.13164 5.22439 5.23441 5.30750 5.65138 5.70354 5.76622 5.87532 6.16991 6.22910 6.59024 6.95735 7.13340 8.45630 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.009501 B = 0.006609 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2946.356482 B = 4235.627510 C = 6253.355697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.362 6.362 3 C 0.472 3.528 4 O -0.526 6.526 5 C -0.111 4.111 6 C -0.621 4.621 7 S 2.476 3.524 8 O -0.978 6.978 9 O -1.005 7.005 10 N -0.834 5.834 11 C -0.273 4.273 12 H 0.085 0.915 13 C 0.076 3.924 14 N -0.849 5.849 15 Si 0.868 3.132 16 H -0.259 1.259 17 H -0.272 1.272 18 H -0.249 1.249 19 C 0.149 3.851 20 C -0.106 4.106 21 C -0.132 4.132 22 C -0.126 4.126 23 C -0.126 4.126 24 C -0.128 4.128 25 C -0.106 4.106 26 H 0.136 0.864 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.126 0.874 30 H 0.135 0.865 31 H 0.133 0.867 32 H 0.120 0.880 33 H 0.285 0.715 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.122 0.878 37 H 0.137 0.863 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.297 -2.156 9.303 14.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.315 3.685 4 O -0.415 6.415 5 C -0.150 4.150 6 C -0.745 4.745 7 S 2.582 3.418 8 O -0.968 6.968 9 O -0.995 6.995 10 N -0.658 5.658 11 C -0.418 4.418 12 H 0.102 0.898 13 C -0.139 4.139 14 N -0.485 5.485 15 Si 0.692 3.308 16 H -0.184 1.184 17 H -0.198 1.198 18 H -0.173 1.173 19 C 0.024 3.976 20 C -0.108 4.108 21 C -0.151 4.151 22 C -0.144 4.144 23 C -0.144 4.144 24 C -0.145 4.145 25 C -0.125 4.125 26 H 0.154 0.846 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.144 0.856 30 H 0.153 0.847 31 H 0.152 0.848 32 H 0.139 0.861 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.140 0.860 37 H 0.155 0.845 38 H 0.162 0.838 39 H 0.157 0.843 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.913 -2.769 9.268 14.583 hybrid contribution -0.103 -0.183 -0.352 0.410 sum -11.015 -2.952 8.916 14.476 Atomic orbital electron populations 1.23621 0.74431 1.05991 1.02695 1.86501 1.25371 1.32235 1.83764 1.23581 0.91808 0.81474 0.71597 1.90653 1.67461 1.37254 1.46132 1.21211 0.89634 0.95953 1.08173 1.30714 1.30486 1.01738 1.11568 1.11958 0.79085 0.77459 0.73328 1.93470 1.76706 1.80448 1.46161 1.93380 1.78385 1.82027 1.45661 1.52972 1.76290 1.25929 1.10631 1.18610 1.15783 1.11758 0.95632 0.89780 1.26133 0.98303 0.94623 0.94800 1.69852 1.33202 1.41701 1.03757 0.86939 0.80810 0.82130 0.80932 1.18426 1.19754 1.17268 1.20535 0.95394 0.96141 0.85572 1.20408 0.96591 0.95657 0.98130 1.21240 0.93783 1.00100 0.99998 1.21335 0.97241 0.95502 1.00329 1.21431 0.99475 0.95752 0.97707 1.21431 0.93111 1.00810 0.99186 1.21244 0.98610 0.94591 0.98070 0.84576 0.91605 0.92069 0.85642 0.84695 0.84838 0.86118 0.90533 0.88680 0.89211 0.85978 0.84506 0.83818 0.84263 0.85963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.64 16 2 O -0.36 -9.03 10.57 -51.45 -0.54 -9.57 16 3 C 0.47 14.24 7.96 71.24 0.57 14.81 16 4 O -0.53 -18.52 15.73 21.96 0.35 -18.17 16 5 C -0.11 -3.37 5.82 29.85 0.17 -3.20 16 6 C -0.62 -22.53 5.47 71.98 0.39 -22.13 16 7 S 2.48 109.96 4.37 -56.49 -0.25 109.71 16 8 O -0.98 -50.52 12.31 -127.65 -1.57 -52.09 16 9 O -1.00 -45.62 16.69 -127.65 -2.13 -47.75 16 10 N -0.83 -37.26 2.03 -347.17 -0.71 -37.96 16 11 C -0.27 -13.73 9.39 84.03 0.79 -12.94 16 12 H 0.08 4.37 7.78 -2.91 -0.02 4.35 16 13 C 0.08 4.09 4.46 84.86 0.38 4.47 16 14 N -0.85 -47.34 13.97 21.65 0.30 -47.03 16 15 Si 0.87 43.67 25.44 68.60 1.75 45.41 16 16 H -0.26 -13.85 6.11 99.48 0.61 -13.25 16 17 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 18 H -0.25 -11.97 7.11 99.48 0.71 -11.27 16 19 C 0.15 5.57 5.77 85.64 0.49 6.07 16 20 C -0.11 -3.57 5.36 -19.87 -0.11 -3.68 16 21 C -0.13 -4.04 8.27 22.27 0.18 -3.86 16 22 C -0.13 -3.36 10.05 22.27 0.22 -3.14 16 23 C -0.13 -3.14 10.05 22.27 0.22 -2.91 16 24 C -0.13 -3.46 10.05 22.27 0.22 -3.24 16 25 C -0.11 -3.41 9.35 22.27 0.21 -3.20 16 26 H 0.14 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.07 1.12 8.13 -2.39 -0.02 1.10 16 28 H 0.06 1.11 8.13 -2.38 -0.02 1.09 16 29 H 0.13 3.53 8.14 -2.39 -0.02 3.51 16 30 H 0.14 3.41 8.14 -2.39 -0.02 3.39 16 31 H 0.13 4.53 5.74 -2.39 -0.01 4.51 16 32 H 0.12 4.69 8.10 -2.40 -0.02 4.67 16 33 H 0.28 14.94 8.31 -92.70 -0.77 14.17 16 34 H 0.09 3.38 8.09 -2.39 -0.02 3.36 16 35 H 0.09 3.17 6.82 -2.39 -0.02 3.15 16 36 H 0.12 3.46 7.33 -2.91 -0.02 3.44 16 37 H 0.14 2.98 8.06 -2.91 -0.02 2.95 16 38 H 0.14 2.70 8.06 -2.91 -0.02 2.67 16 39 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 40 H 0.12 3.96 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -67.81 349.07 3.09 -64.72 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 0.95 Total: 24.05 kcal Atomic # 6 Polarization: -36.26 SS G_CDS: 4.95 Total: -31.31 kcal Atomic # 7 Polarization: -84.59 SS G_CDS: -0.40 Total: -84.99 kcal Atomic # 8 Polarization: -123.69 SS G_CDS: -3.90 Total: -127.59 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.75 Total: 45.41 kcal Atomic # 16 Polarization: 109.96 SS G_CDS: -0.25 Total: 109.71 kcal Total: -67.81 3.09 -64.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188372604.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.726 kcal (2) G-P(sol) polarization free energy of solvation -67.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds