Wall clock time and date at job start Fri Apr 10 2020 18:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86794 * 120.00231 * 2 1 4 4 H 1.48500 * 109.47640 * 240.00234 * 3 2 1 5 5 H 1.48501 * 109.46983 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47372 * 119.99628 * 3 2 1 7 7 C 1.38806 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00170 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99678 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99720 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47163 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99919 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00169 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00180 * 179.97438 * 13 11 10 15 15 H 1.09003 * 110.64169 * 31.84475 * 14 13 11 16 16 C 1.54932 * 110.72349 * 268.50090 * 14 13 11 17 17 N 1.48534 * 103.22591 * 204.22585 * 16 14 13 18 18 C 1.46900 * 110.99940 * 159.71887 * 17 16 14 19 19 C 1.50699 * 109.47518 * 312.47512 * 18 17 16 20 20 C 1.41383 * 126.79819 * 94.99428 * 19 18 17 21 21 C 1.35455 * 103.98301 * 180.02562 * 20 19 18 22 22 O 1.34036 * 106.44593 * 0.02562 * 21 20 19 23 23 N 1.20921 * 111.57107 * 359.97438 * 22 21 20 24 24 C 1.47902 * 105.82204 * 39.20445 * 17 16 14 25 25 C 1.53994 * 107.05702 * 334.67244 * 24 17 16 26 26 H 1.09000 * 110.31009 * 120.14171 * 25 24 17 27 27 O 1.42904 * 110.30614 * 242.30735 * 25 24 17 28 28 H 0.96997 * 120.00051 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47485 * 60.00123 * 10 9 7 30 30 H 1.09001 * 109.46850 * 299.99839 * 10 9 7 31 31 H 0.97005 * 120.00192 * 359.97438 * 13 11 10 32 32 H 1.09000 * 110.66893 * 85.79293 * 16 14 13 33 33 H 1.09001 * 110.66831 * 322.65331 * 16 14 13 34 34 H 1.09006 * 109.47234 * 192.47830 * 18 17 16 35 35 H 1.09004 * 109.47201 * 72.48019 * 18 17 16 36 36 H 1.08001 * 128.00739 * 0.27353 * 20 19 18 37 37 H 1.08003 * 126.77421 * 179.97438 * 21 20 19 38 38 H 1.09001 * 109.91614 * 94.01956 * 24 17 16 39 39 H 1.08997 * 109.91937 * 215.11473 * 24 17 16 40 40 H 0.96697 * 113.99663 * 298.54666 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9874 -5.3028 -0.0012 12 8 0.7910 -5.5023 -0.0011 13 7 2.8441 -6.3431 -0.0008 14 6 2.3304 -7.7151 -0.0008 15 1 1.3844 -7.7712 -0.5393 16 6 2.1731 -8.2417 1.4478 17 7 2.2504 -9.7159 1.2837 18 6 2.5994 -10.3692 2.5523 19 6 3.7700 -9.6566 3.1790 20 6 3.7159 -8.6347 4.1547 21 6 5.0161 -8.3322 4.3842 22 8 5.7383 -9.1330 3.5882 23 7 5.0313 -9.8592 2.9287 24 6 3.2919 -9.9538 0.2609 25 6 3.3659 -8.6870 -0.6115 26 1 4.3650 -8.2535 -0.5651 27 8 3.0201 -8.9950 -1.9634 28 1 -0.4850 0.8400 -0.0004 29 1 3.1245 -3.7314 0.8894 30 1 3.1244 -3.7313 -0.8906 31 1 3.8009 -6.1836 -0.0004 32 1 1.2071 -7.9506 1.8602 33 1 2.9861 -7.8818 2.0784 34 1 2.8656 -11.4094 2.3642 35 1 1.7454 -10.3294 3.2285 36 1 2.8407 -8.1994 4.6138 37 1 5.3958 -7.5913 5.0722 38 1 4.2533 -10.1288 0.7437 39 1 3.0218 -10.8145 -0.3509 40 1 3.6105 -9.6348 -2.3844 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191149308.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:48 Heat of formation + Delta-G solvation = -2.414846 kcal Electronic energy + Delta-G solvation = -25409.200118 eV Core-core repulsion = 21547.331533 eV Total energy + Delta-G solvation = -3861.868584 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.34747 -40.27580 -38.64431 -36.68471 -34.74297 -33.75510 -32.43736 -32.08235 -30.67759 -29.20621 -28.05328 -26.12072 -25.45296 -23.53845 -22.57404 -21.25227 -20.82008 -20.47933 -18.17856 -18.05101 -17.92072 -17.48382 -16.75345 -16.39488 -15.73667 -15.50397 -15.05300 -14.81418 -14.60772 -14.42823 -14.02403 -13.90667 -13.71846 -13.68542 -13.14405 -12.74602 -12.64782 -12.46621 -12.38136 -12.08460 -11.69966 -11.55480 -11.05908 -11.04707 -10.93735 -10.77542 -10.57603 -10.39195 -10.02784 -9.83517 -9.44270 -9.08149 -9.02614 -8.93841 -8.25141 -6.50948 -6.22284 -3.93083 1.11055 1.78813 2.87806 2.92314 3.03753 3.22649 3.24989 3.28398 3.50809 3.66929 3.78614 3.89954 4.11735 4.19605 4.35749 4.41221 4.68981 4.77857 4.87602 4.97692 5.05782 5.11644 5.12693 5.16228 5.19163 5.29902 5.33232 5.53041 5.59689 5.61914 5.71293 5.85962 5.93308 6.11264 6.28906 6.47204 6.60292 7.34934 7.58197 7.63002 7.84612 8.34088 8.56677 9.22763 10.85075 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.015914 B = 0.002819 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.996958 B = 9929.442452 C =10859.663464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.057 6.057 10 C -0.153 4.153 11 C 0.535 3.465 12 O -0.511 6.511 13 N -0.730 5.730 14 C 0.152 3.848 15 H 0.117 0.883 16 C 0.020 3.980 17 N -0.493 5.493 18 C 0.121 3.879 19 C -0.019 4.019 20 C -0.225 4.225 21 C -0.056 4.056 22 O 0.096 5.904 23 N -0.360 5.360 24 C -0.002 4.002 25 C 0.090 3.910 26 H 0.065 0.935 27 O -0.550 6.550 28 H 0.269 0.731 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.396 0.604 32 H 0.099 0.901 33 H 0.060 0.940 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.174 0.826 37 H 0.218 0.782 38 H 0.065 0.935 39 H 0.092 0.908 40 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.079 -21.775 6.959 25.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.686 4.686 8 H 0.090 0.910 9 S 0.169 5.831 10 C -0.304 4.304 11 C 0.321 3.679 12 O -0.384 6.384 13 N -0.385 5.385 14 C 0.046 3.954 15 H 0.135 0.865 16 C -0.109 4.109 17 N -0.216 5.216 18 C -0.008 4.008 19 C -0.179 4.179 20 C -0.247 4.247 21 C -0.137 4.137 22 O 0.030 5.970 23 N -0.064 5.064 24 C -0.131 4.131 25 C 0.030 3.970 26 H 0.083 0.917 27 O -0.355 6.355 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.230 0.770 32 H 0.117 0.883 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.123 0.877 36 H 0.191 0.809 37 H 0.235 0.765 38 H 0.083 0.917 39 H 0.111 0.889 40 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 9.562 -22.619 6.082 25.299 hybrid contribution 3.185 1.796 0.825 3.749 sum 12.747 -20.823 6.908 25.373 Atomic orbital electron populations 1.70004 1.05948 1.27593 1.46699 1.24987 0.95023 0.99004 0.94511 0.86226 0.79243 0.81251 0.78792 1.19927 1.20794 1.19959 1.22830 0.94874 0.91697 1.59157 0.90996 1.85412 1.04722 0.96202 1.96718 1.23531 1.06679 0.95240 1.04914 1.20339 0.86545 0.86183 0.74812 1.90716 1.15227 1.85452 1.47029 1.45954 1.09789 1.04803 1.77927 1.21639 0.98735 0.80450 0.94598 0.86520 1.23811 1.03379 0.86644 0.97071 1.65069 1.41485 1.09330 1.05732 1.20973 0.91583 0.97632 0.90653 1.24581 0.94239 0.99789 0.99303 1.22880 0.98923 1.00948 1.01961 1.26097 0.91266 0.98196 0.98120 1.84831 1.34352 1.37480 1.40315 1.73859 1.04224 1.13365 1.14986 1.23777 0.95107 0.99031 0.95180 1.22849 0.97474 0.94084 0.82620 0.91686 1.86637 1.57602 1.66124 1.25171 0.92100 0.89269 0.89177 0.76958 0.88295 0.92195 0.88793 0.87678 0.80858 0.76518 0.91718 0.88944 0.77419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.09 13.22 55.49 0.73 -25.36 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.29 29.55 -169.99 -5.02 16.27 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 7 C -0.54 -15.25 9.50 30.94 0.29 -14.96 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 10 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 11 C 0.53 10.05 7.85 -10.99 -0.09 9.97 16 12 O -0.51 -11.65 15.51 5.55 0.09 -11.56 16 13 N -0.73 -10.17 5.18 -52.01 -0.27 -10.44 16 14 C 0.15 2.01 3.17 -66.07 -0.21 1.80 16 15 H 0.12 1.92 7.49 -51.93 -0.39 1.54 16 16 C 0.02 0.23 5.94 -1.90 -0.01 0.22 16 17 N -0.49 -4.96 5.54 -231.89 -1.28 -6.24 16 18 C 0.12 1.00 6.08 -4.98 -0.03 0.96 16 19 C -0.02 -0.17 4.75 -82.10 -0.39 -0.55 16 20 C -0.23 -1.70 9.66 -39.38 -0.38 -2.08 16 21 C -0.06 -0.36 12.30 29.74 0.37 0.01 16 22 O 0.10 0.85 11.20 17.19 0.19 1.05 16 23 N -0.36 -3.59 10.80 33.42 0.36 -3.23 16 24 C 0.00 -0.02 6.26 -2.75 -0.02 -0.04 16 25 C 0.09 0.93 4.10 -25.37 -0.10 0.83 16 26 H 0.07 0.60 7.75 -51.93 -0.40 0.20 16 27 O -0.55 -5.95 13.26 -35.23 -0.47 -6.42 16 28 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 30 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 31 H 0.40 4.41 8.39 -40.82 -0.34 4.07 16 32 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.06 0.66 5.17 -51.93 -0.27 0.40 16 34 H 0.09 0.70 8.08 -51.93 -0.42 0.28 16 35 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.22 0.57 8.06 -52.48 -0.42 0.15 16 38 H 0.06 0.61 6.07 -51.93 -0.32 0.29 16 39 H 0.09 0.78 7.97 -51.93 -0.41 0.37 16 40 H 0.38 2.23 9.11 45.56 0.41 2.64 16 LS Contribution 352.22 15.07 5.31 5.31 Total: -1.00 -36.56 352.22 -7.23 -43.80 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -4.22 Total: 5.29 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -0.44 Total: -4.69 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: -0.46 Total: -45.27 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.19 Total: -16.94 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.56 -7.23 -43.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191149308.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.381 kcal (2) G-P(sol) polarization free energy of solvation -36.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds