Wall clock time and date at job start Fri Apr 10 2020 18:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47608 * 2 1 4 4 O 1.42900 * 109.47026 * 120.00362 * 2 1 3 5 5 C 1.53000 * 109.47138 * 240.00118 * 2 1 3 6 6 N 1.46505 * 109.47505 * 175.00241 * 5 2 1 7 7 C 1.36327 * 126.27415 * 265.80086 * 6 5 2 8 8 N 1.30140 * 109.97436 * 179.90411 * 7 6 5 9 9 C 1.35470 * 109.44111 * 359.49940 * 8 7 6 10 10 C 1.37195 * 126.27662 * 84.99805 * 6 5 2 11 11 N 1.32883 * 134.92227 * 0.02562 * 10 6 5 12 12 C 1.31649 * 120.64281 * 179.97438 * 11 10 6 13 13 N 1.32042 * 122.46081 * 0.02562 * 12 11 10 14 14 C 1.32903 * 121.19055 * 359.97438 * 13 12 11 15 15 N 1.38403 * 120.76988 * 180.02562 * 14 13 12 16 16 S 1.65598 * 119.99824 * 0.02562 * 15 14 13 17 17 O 1.42099 * 106.40395 * 311.46113 * 16 15 14 18 18 O 1.42101 * 106.40367 * 178.53983 * 16 15 14 19 19 C 1.76199 * 107.21820 * 64.99983 * 16 15 14 20 20 H 1.07997 * 120.00250 * 0.02562 * 19 16 15 21 21 C 1.37880 * 120.00013 * 179.72553 * 19 16 15 22 22 N 1.31515 * 119.99887 * 359.97438 * 21 19 16 23 23 Si 1.86800 * 119.99895 * 180.02562 * 21 19 16 24 24 H 1.48500 * 109.47520 * 89.99933 * 23 21 19 25 25 H 1.48504 * 109.47004 * 209.99685 * 23 21 19 26 26 H 1.48494 * 109.47119 * 329.99385 * 23 21 19 27 27 H 1.08994 * 109.47395 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46922 * 300.00242 * 1 2 3 29 29 H 1.09000 * 109.46800 * 59.99183 * 1 2 3 30 30 H 0.96698 * 114.00483 * 59.99864 * 4 2 1 31 31 H 1.09002 * 109.47034 * 55.00304 * 5 2 1 32 32 H 1.09001 * 109.47531 * 295.00556 * 5 2 1 33 33 H 1.07998 * 125.01259 * 359.41150 * 7 6 5 34 34 H 1.08004 * 118.76744 * 180.02562 * 12 11 10 35 35 H 0.96994 * 120.00044 * 179.97438 * 15 14 13 36 36 H 0.97000 * 119.99443 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0400 -0.7212 -1.2493 6 7 3.5001 -0.6179 -1.3110 7 6 4.2140 0.3264 -1.9870 8 7 5.4887 0.1207 -1.8247 9 6 5.6733 -0.9589 -1.0275 10 6 4.3995 -1.4447 -0.6866 11 7 4.3042 -2.5088 0.1035 12 6 5.3857 -3.1058 0.5584 13 7 6.6031 -2.6892 0.2617 14 6 6.7974 -1.6332 -0.5214 15 7 8.0773 -1.2043 -0.8272 16 16 9.3886 -2.0099 -0.2158 17 8 9.1470 -2.1724 1.1751 18 8 10.5388 -1.3556 -0.7336 19 6 9.3794 -3.6274 -0.9146 20 1 8.6000 -3.9127 -1.6055 21 6 10.3708 -4.5268 -0.5840 22 7 11.3236 -4.1772 0.2525 23 14 10.3615 -6.2413 -1.3254 24 1 11.1333 -6.2363 -2.5941 25 1 10.9821 -7.1962 -0.3723 26 1 8.9617 -6.6546 -1.5991 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 1.7210 -1.5953 1.2329 31 1 1.6054 -0.2616 -2.1370 32 1 1.7516 -1.7715 -1.2057 33 1 3.7851 1.1227 -2.5773 34 1 5.2731 -3.9686 1.1982 35 1 8.2062 -0.4324 -1.4002 36 1 12.0212 -4.8099 0.4847 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192938832.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:53 Heat of formation + Delta-G solvation = -66.786205 kcal Electronic energy + Delta-G solvation = -25844.079213 eV Core-core repulsion = 21875.878933 eV Total energy + Delta-G solvation = -3968.200279 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.083 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.59930 -40.49194 -38.63944 -37.53718 -37.06071 -36.23403 -35.18114 -34.79549 -33.26264 -31.88693 -30.50085 -28.27324 -27.64724 -25.39643 -24.76507 -23.03977 -21.97704 -21.26126 -20.02505 -19.80955 -18.77516 -18.25203 -18.10581 -17.55797 -17.05968 -16.80508 -16.60397 -16.03066 -15.93077 -15.71185 -15.50098 -15.28556 -14.96465 -14.38007 -14.01044 -13.60370 -13.47130 -13.31952 -13.09743 -13.00720 -12.95198 -12.76622 -12.58001 -12.54141 -12.43857 -12.28907 -12.05966 -11.57910 -11.38574 -11.22170 -11.16658 -10.87611 -10.20303 -10.13004 -9.28140 -8.74218 -7.44472 -0.31048 0.04684 0.24659 1.28321 1.34439 1.36376 1.52579 1.73223 2.16023 2.35659 2.60146 2.82189 2.96769 3.03695 3.29059 3.45318 3.58068 3.66112 3.73906 3.92650 3.95360 4.20524 4.28591 4.37219 4.53022 4.60352 4.69699 4.88677 5.01526 5.14488 5.27898 5.30712 5.36560 5.58197 5.84967 5.89394 6.23059 6.63789 6.78423 6.81074 7.17026 8.23768 Molecular weight = 327.08amu Principal moments of inertia in cm(-1) A = 0.022463 B = 0.003636 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.202146 B = 7698.011076 C = 8128.007114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.083 3.917 3 H 0.097 0.903 4 O -0.581 6.581 5 C 0.077 3.923 6 N -0.465 5.465 7 C 0.281 3.719 8 N -0.505 5.505 9 C -0.113 4.113 10 C 0.300 3.700 11 N -0.528 5.528 12 C 0.347 3.653 13 N -0.580 5.580 14 C 0.478 3.522 15 N -1.021 6.021 16 S 2.706 3.294 17 O -1.005 7.005 18 O -1.029 7.029 19 C -1.007 5.007 20 H 0.109 0.891 21 C 0.074 3.926 22 N -0.893 5.893 23 Si 0.995 3.005 24 H -0.254 1.254 25 H -0.258 1.258 26 H -0.252 1.252 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.092 0.908 30 H 0.386 0.614 31 H 0.153 0.847 32 H 0.101 0.899 33 H 0.282 0.718 34 H 0.237 0.763 35 H 0.436 0.564 36 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.192 5.677 -6.608 27.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.024 3.976 3 H 0.115 0.885 4 O -0.389 6.389 5 C -0.043 4.043 6 N -0.158 5.158 7 C -0.006 4.006 8 N -0.225 5.225 9 C -0.239 4.239 10 C 0.055 3.945 11 N -0.251 5.251 12 C 0.057 3.943 13 N -0.306 5.306 14 C 0.228 3.772 15 N -0.764 5.764 16 S 2.808 3.192 17 O -0.994 6.994 18 O -1.019 7.019 19 C -1.142 5.142 20 H 0.127 0.873 21 C -0.139 4.139 22 N -0.525 5.525 23 Si 0.812 3.188 24 H -0.179 1.179 25 H -0.182 1.182 26 H -0.176 1.176 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.111 0.889 30 H 0.235 0.765 31 H 0.171 0.829 32 H 0.119 0.881 33 H 0.298 0.702 34 H 0.253 0.747 35 H 0.273 0.727 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -24.688 6.237 -5.448 26.040 hybrid contribution -0.238 -0.909 -0.845 1.264 sum -24.927 5.328 -6.293 26.255 Atomic orbital electron populations 1.22350 0.92836 1.03810 1.04053 1.22463 0.95083 0.96490 0.83592 0.88536 1.86644 1.77910 1.30122 1.44189 1.23129 0.73575 1.04931 1.02661 1.45307 1.07920 1.22974 1.39569 1.26643 0.85229 0.93589 0.95117 1.70205 1.18503 1.15416 1.18343 1.19840 0.93985 1.01597 1.08489 1.19007 0.88170 0.92610 0.94694 1.67335 1.33978 1.09412 1.14397 1.25203 0.79343 0.96711 0.93019 1.68176 1.29309 1.14728 1.18407 1.17741 0.83815 0.88078 0.87526 1.53754 1.17613 1.43135 1.61927 1.00662 0.69558 0.75685 0.73269 1.93342 1.84141 1.87555 1.34392 1.93357 1.48157 1.78753 1.81673 1.30365 1.20622 1.20624 1.42552 0.87258 1.25958 0.91078 1.05283 0.91533 1.69976 1.12570 1.39918 1.29993 0.85079 0.80168 0.74537 0.78979 1.17852 1.18219 1.17578 0.91118 0.92044 0.88875 0.76491 0.82919 0.88114 0.70238 0.74681 0.72679 0.88965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.80 9.53 71.98 0.69 -0.12 16 2 C 0.08 0.86 3.83 30.59 0.12 0.98 16 3 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 4 O -0.58 -11.05 12.91 -148.98 -1.92 -12.97 16 5 C 0.08 0.67 5.81 86.38 0.50 1.17 16 6 N -0.47 -8.94 2.76 -526.03 -1.45 -10.40 16 7 C 0.28 5.05 12.51 179.95 2.25 7.30 16 8 N -0.51 -15.29 11.28 -191.39 -2.16 -17.45 16 9 C -0.11 -4.17 7.17 39.69 0.28 -3.88 16 10 C 0.30 9.16 7.66 133.87 1.02 10.19 16 11 N -0.53 -16.33 10.47 -197.89 -2.07 -18.40 16 12 C 0.35 12.17 12.25 180.85 2.22 14.38 16 13 N -0.58 -26.11 8.54 -196.96 -1.68 -27.79 16 14 C 0.48 21.21 7.39 133.45 0.99 22.20 16 15 N -1.02 -47.91 5.83 -54.65 -0.32 -48.23 16 16 S 2.71 156.37 4.66 -56.49 -0.26 156.10 16 17 O -1.00 -63.50 16.93 -128.00 -2.17 -65.67 16 18 O -1.03 -64.13 18.02 -128.00 -2.31 -66.44 16 19 C -1.01 -58.29 9.37 67.73 0.63 -57.66 16 20 H 0.11 5.93 7.81 -2.91 -0.02 5.91 16 21 C 0.07 4.25 5.46 84.66 0.46 4.71 16 22 N -0.89 -54.30 13.19 21.45 0.28 -54.02 16 23 Si 0.99 42.70 29.54 68.60 2.03 44.73 16 24 H -0.25 -10.26 7.11 99.48 0.71 -9.56 16 25 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 26 H -0.25 -10.30 7.11 99.48 0.71 -9.59 16 27 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 28 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 30 H 0.39 5.62 9.05 -74.06 -0.67 4.95 16 31 H 0.15 -0.08 8.14 -2.39 -0.02 -0.10 16 32 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.28 1.07 8.06 -2.91 -0.02 1.04 16 34 H 0.24 6.30 8.06 -2.91 -0.02 6.28 16 35 H 0.44 18.01 8.85 -96.75 -0.86 17.16 16 36 H 0.30 16.30 8.31 -92.71 -0.77 15.53 16 Total: -1.00 -93.37 335.41 -3.23 -96.60 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: -0.36 Total: 24.65 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: 9.17 Total: -0.72 kcal Atomic # 7 Polarization: -168.88 SS G_CDS: -7.40 Total: -176.28 kcal Atomic # 8 Polarization: -138.68 SS G_CDS: -6.40 Total: -145.07 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Atomic # 16 Polarization: 156.37 SS G_CDS: -0.26 Total: 156.10 kcal Total: -93.37 -3.23 -96.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192938832.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.818 kcal (2) G-P(sol) polarization free energy of solvation -93.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds