Wall clock time and date at job start Fri Apr 10 2020 18:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00126 * 2 1 4 4 H 1.48502 * 109.47028 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47452 * 299.99809 * 3 2 1 6 6 H 1.48501 * 109.47398 * 59.99854 * 3 2 1 7 7 C 1.37883 * 119.99614 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99523 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00220 * 359.97438 * 7 2 1 10 10 O 1.42107 * 106.39638 * 66.46221 * 9 7 2 11 11 O 1.42095 * 106.40490 * 293.54609 * 9 7 2 12 12 N 1.65598 * 107.21972 * 180.02562 * 9 7 2 13 13 C 1.39010 * 119.99785 * 65.00199 * 12 9 7 14 14 N 1.32420 * 119.70185 * 0.02562 * 13 12 9 15 15 C 1.31943 * 121.61886 * 180.02562 * 14 13 12 16 16 C 1.38068 * 120.85753 * 359.97438 * 15 14 13 17 17 C 1.38835 * 119.32478 * 359.73030 * 16 15 14 18 18 C 1.38346 * 118.50383 * 0.51202 * 17 16 15 19 19 C 1.50708 * 120.44795 * 179.78540 * 18 17 16 20 20 N 1.46908 * 109.46782 * 259.71845 * 19 18 17 21 21 C 1.47024 * 110.99261 * 66.32417 * 20 19 18 22 22 C 1.53103 * 109.24985 * 182.34870 * 21 20 19 23 23 O 1.43012 * 109.29295 * 303.21723 * 22 21 20 24 24 C 1.43011 * 113.74271 * 58.65008 * 23 22 21 25 25 C 1.47018 * 110.99661 * 189.99956 * 20 19 18 26 26 H 0.96995 * 119.99725 * 0.02562 * 1 2 3 27 27 H 0.97004 * 119.99905 * 245.00662 * 12 9 7 28 28 H 1.08002 * 119.57304 * 180.02562 * 15 14 13 29 29 H 1.08002 * 120.33894 * 180.02562 * 16 15 14 30 30 H 1.08000 * 120.75087 * 180.27661 * 17 16 15 31 31 H 1.09001 * 109.46829 * 139.72572 * 19 18 17 32 32 H 1.08995 * 109.46972 * 19.71848 * 19 18 17 33 33 H 1.08998 * 109.47369 * 62.43595 * 21 20 19 34 34 H 1.08998 * 109.54483 * 302.29802 * 21 20 19 35 35 H 1.09002 * 109.50635 * 183.25881 * 22 21 20 36 36 H 1.09003 * 109.50698 * 63.17493 * 22 21 20 37 37 H 1.08997 * 109.50806 * 61.26171 * 24 23 22 38 38 H 1.08997 * 109.50924 * 181.35636 * 24 23 22 39 39 H 1.08994 * 109.50209 * 57.67478 * 25 20 19 40 40 H 1.08997 * 109.50514 * 297.54292 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 16 1.1235 -2.7201 0.0019 10 8 0.4509 -2.7961 -1.2476 11 8 0.4517 -2.7945 1.2518 12 7 2.2482 -3.9355 0.0030 13 6 3.0936 -4.0991 1.0942 14 7 2.9941 -3.2800 2.1299 15 6 3.7774 -3.4005 3.1849 16 6 4.7351 -4.3932 3.2462 17 6 4.8676 -5.2767 2.1835 18 6 4.0358 -5.1222 1.0888 19 6 4.1452 -6.0536 -0.0909 20 7 4.9089 -5.3995 -1.1620 21 6 6.3071 -5.1890 -0.7589 22 6 7.0499 -4.4543 -1.8780 23 8 6.9422 -5.2064 -3.0896 24 6 5.5939 -5.4287 -3.5114 25 6 4.8365 -6.1742 -2.4094 26 1 -0.4849 0.8400 -0.0004 27 1 2.3171 -4.5333 -0.7579 28 1 3.6673 -2.7143 4.0116 29 1 5.3714 -4.4844 4.1140 30 1 5.6060 -6.0644 2.2090 31 1 3.1471 -6.2988 -0.4541 32 1 4.6557 -6.9672 0.2136 33 1 6.7823 -6.1532 -0.5784 34 1 6.3379 -4.5911 0.1520 35 1 8.1006 -4.3472 -1.6082 36 1 6.6086 -3.4680 -2.0213 37 1 5.1095 -4.4711 -3.7020 38 1 5.5915 -6.0257 -4.4233 39 1 3.7937 -6.2955 -2.7023 40 1 5.2885 -7.1541 -2.2560 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192942891.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:57 Heat of formation + Delta-G solvation = -114.715574 kcal Electronic energy + Delta-G solvation = -26888.567004 eV Core-core repulsion = 23021.828695 eV Total energy + Delta-G solvation = -3866.738309 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.51267 -40.26308 -37.44260 -37.04688 -36.19180 -36.07356 -35.13081 -33.60188 -32.07935 -30.97386 -28.83123 -28.24246 -25.75861 -24.98643 -24.22691 -22.70443 -21.33279 -20.99576 -19.66442 -19.11601 -18.30927 -17.57803 -17.18052 -17.09608 -16.56796 -16.46404 -16.10297 -16.07273 -15.92752 -15.73078 -15.38446 -15.29389 -14.80422 -14.51765 -14.01886 -13.82611 -13.42653 -13.32609 -13.18082 -13.02857 -12.80980 -12.67115 -12.56164 -12.39606 -12.33598 -12.31947 -12.26360 -12.03412 -11.52743 -11.24538 -10.90091 -10.71032 -10.60446 -10.20878 -9.35497 -9.15192 -8.73251 -7.41351 0.18940 0.30090 0.53190 1.30493 1.31452 1.49096 2.19126 2.59618 2.61072 2.71037 2.94194 3.12510 3.54294 3.66217 3.80450 3.87813 3.99486 4.04221 4.14124 4.18858 4.23601 4.30329 4.36515 4.55926 4.60214 4.60819 4.65449 4.74914 4.84255 4.89068 4.91274 4.94088 5.04317 5.26972 5.30970 5.37713 5.78426 5.91870 5.94843 5.99079 6.11265 6.18159 6.80137 7.22793 8.23750 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.011822 B = 0.005123 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.849937 B = 5463.895570 C = 6129.965745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.990 3.010 4 H -0.254 1.254 5 H -0.256 1.256 6 H -0.257 1.257 7 C -1.005 5.005 8 H 0.105 0.895 9 S 2.715 3.285 10 O -1.039 7.039 11 O -1.017 7.017 12 N -1.032 6.032 13 C 0.382 3.618 14 N -0.555 5.555 15 C 0.121 3.879 16 C -0.197 4.197 17 C -0.034 4.034 18 C -0.175 4.175 19 C 0.105 3.895 20 N -0.556 5.556 21 C 0.025 3.975 22 C 0.060 3.940 23 O -0.400 6.400 24 C 0.058 3.942 25 C 0.018 3.982 26 H 0.298 0.702 27 H 0.430 0.570 28 H 0.170 0.830 29 H 0.175 0.825 30 H 0.174 0.826 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.117 0.883 36 H 0.041 0.959 37 H 0.046 0.954 38 H 0.119 0.881 39 H 0.093 0.907 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.331 -13.003 1.166 21.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.808 3.192 4 H -0.177 1.177 5 H -0.181 1.181 6 H -0.181 1.181 7 C -1.139 5.139 8 H 0.124 0.876 9 S 2.816 3.184 10 O -1.029 7.029 11 O -1.006 7.006 12 N -0.778 5.778 13 C 0.149 3.851 14 N -0.270 5.270 15 C -0.037 4.037 16 C -0.219 4.219 17 C -0.061 4.061 18 C -0.183 4.183 19 C -0.022 4.022 20 N -0.282 5.282 21 C -0.103 4.103 22 C -0.017 4.017 23 O -0.318 6.318 24 C -0.018 4.018 25 C -0.109 4.109 26 H 0.108 0.892 27 H 0.267 0.733 28 H 0.187 0.813 29 H 0.192 0.808 30 H 0.191 0.809 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.135 0.865 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.137 0.863 39 H 0.112 0.888 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.417 -11.924 0.987 19.515 hybrid contribution 0.777 -0.141 -0.109 0.797 sum 16.194 -12.066 0.878 20.214 Atomic orbital electron populations 1.69987 1.08592 1.32112 1.42216 1.25940 0.95371 1.05054 0.87657 0.85113 0.79202 0.75330 0.79506 1.17719 1.18063 1.18149 1.30472 1.06063 1.11723 1.65672 0.87636 1.00209 0.72392 0.74202 0.71558 1.93337 1.74196 1.88294 1.47085 1.93320 1.73741 1.87493 1.46087 1.53508 1.50822 1.48774 1.24720 1.18075 0.89291 0.91520 0.86210 1.67236 1.28937 1.28388 1.02483 1.22952 0.90027 0.97001 0.93688 1.22287 1.01191 0.96716 1.01662 1.21695 0.95844 0.97962 0.90553 1.20309 0.99252 0.99229 0.99498 1.20875 0.99191 0.93793 0.88354 1.62132 1.12581 1.49543 1.03954 1.22751 0.87557 1.00843 0.99153 1.22764 1.01631 0.93738 0.83592 1.87932 1.27076 1.74917 1.41920 1.22798 0.81841 0.99999 0.97200 1.22839 1.02360 0.95761 0.89973 0.89179 0.73279 0.81328 0.80759 0.80895 0.90154 0.90315 0.92333 0.89726 0.86485 0.94036 0.93594 0.86278 0.88833 0.92420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.44 13.19 21.45 0.28 -55.16 16 2 C 0.07 4.18 5.46 84.66 0.46 4.64 16 3 Si 0.99 43.64 29.54 68.60 2.03 45.67 16 4 H -0.25 -10.65 7.11 99.48 0.71 -9.94 16 5 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 6 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 7 C -1.00 -58.83 9.33 67.74 0.63 -58.20 16 8 H 0.11 5.86 7.81 -2.91 -0.02 5.84 16 9 S 2.71 155.54 4.66 -56.49 -0.26 155.28 16 10 O -1.04 -64.42 18.02 -128.00 -2.31 -66.73 16 11 O -1.02 -64.55 16.89 -128.00 -2.16 -66.71 16 12 N -1.03 -44.88 5.76 -55.45 -0.32 -45.20 16 13 C 0.38 14.94 7.31 133.04 0.97 15.91 16 14 N -0.55 -23.74 8.33 -193.27 -1.61 -25.35 16 15 C 0.12 3.77 11.17 84.64 0.95 4.71 16 16 C -0.20 -4.17 10.10 22.37 0.23 -3.95 16 17 C -0.03 -0.68 8.86 22.44 0.20 -0.48 16 18 C -0.17 -4.78 4.61 -19.63 -0.09 -4.87 16 19 C 0.11 2.27 4.41 85.56 0.38 2.65 16 20 N -0.56 -12.64 4.72 -899.71 -4.24 -16.89 16 21 C 0.02 0.48 5.41 86.31 0.47 0.95 16 22 C 0.06 1.24 7.01 72.02 0.50 1.74 16 23 O -0.40 -9.13 10.83 -148.98 -1.61 -10.74 16 24 C 0.06 1.18 7.01 72.02 0.50 1.69 16 25 C 0.02 0.35 5.65 86.31 0.49 0.83 16 26 H 0.30 16.47 8.31 -92.71 -0.77 15.70 16 27 H 0.43 15.94 7.04 -96.74 -0.68 15.26 16 28 H 0.17 4.49 8.06 -2.91 -0.02 4.47 16 29 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 30 H 0.17 1.93 8.06 -2.91 -0.02 1.90 16 31 H 0.08 1.78 7.00 -2.39 -0.02 1.77 16 32 H 0.08 1.21 8.01 -2.39 -0.02 1.20 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.08 1.72 6.55 -2.39 -0.02 1.70 16 35 H 0.12 1.85 8.14 -2.39 -0.02 1.84 16 36 H 0.04 1.02 8.14 -2.39 -0.02 1.01 16 37 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.09 1.66 8.09 -2.39 -0.02 1.64 16 40 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -86.68 345.41 -4.13 -90.81 By element: Atomic # 1 Polarization: 28.99 SS G_CDS: 0.39 Total: 29.38 kcal Atomic # 6 Polarization: -40.06 SS G_CDS: 5.69 Total: -34.37 kcal Atomic # 7 Polarization: -136.70 SS G_CDS: -5.89 Total: -142.59 kcal Atomic # 8 Polarization: -138.10 SS G_CDS: -6.08 Total: -144.18 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: 155.54 SS G_CDS: -0.26 Total: 155.28 kcal Total: -86.68 -4.13 -90.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192942891.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.905 kcal (2) G-P(sol) polarization free energy of solvation -86.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds