Wall clock time and date at job start Fri Apr 10 2020 18:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34223 * 116.99924 * 2 1 4 4 O 1.20827 * 120.00368 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99947 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47164 * 180.02562 * 5 3 2 7 7 N 1.46507 * 109.47169 * 180.02562 * 6 5 3 8 8 C 1.46498 * 119.99926 * 84.99617 * 7 6 5 9 9 C 1.50702 * 109.47172 * 75.75454 * 8 7 6 10 10 C 1.38229 * 120.00213 * 95.89642 * 9 8 7 11 11 C 1.38239 * 120.00036 * 179.97438 * 10 9 8 12 12 C 1.38230 * 119.99766 * 359.97341 * 11 10 9 13 13 C 1.38234 * 120.00230 * 0.28101 * 12 11 10 14 14 C 1.38234 * 119.99572 * 275.87690 * 9 8 7 15 15 S 1.65596 * 119.99674 * 264.99878 * 7 6 5 16 16 O 1.42102 * 106.40020 * 230.02116 * 15 7 6 17 17 O 1.42098 * 106.40647 * 2.94120 * 15 7 6 18 18 C 1.76200 * 107.21692 * 116.48139 * 15 7 6 19 19 H 1.08006 * 119.99760 * 114.27368 * 18 15 7 20 20 C 1.37875 * 120.00103 * 294.27361 * 18 15 7 21 21 N 1.31515 * 120.00075 * 333.92349 * 20 18 15 22 22 Si 1.86798 * 120.00111 * 153.92969 * 20 18 15 23 23 H 1.48502 * 109.47069 * 89.99951 * 22 20 18 24 24 H 1.48500 * 109.47261 * 209.99797 * 22 20 18 25 25 H 1.48497 * 109.47204 * 330.00067 * 22 20 18 26 26 H 1.08998 * 109.47100 * 300.00133 * 1 2 3 27 27 H 1.09000 * 109.46840 * 60.00032 * 1 2 3 28 28 H 1.09001 * 109.47178 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47214 * 60.00634 * 5 3 2 30 30 H 1.09001 * 109.47418 * 300.00310 * 5 3 2 31 31 H 1.09000 * 109.47535 * 60.00399 * 6 5 3 32 32 H 1.08995 * 109.47038 * 299.99803 * 6 5 3 33 33 H 1.09002 * 109.47355 * 315.74934 * 8 7 6 34 34 H 1.09001 * 109.47007 * 195.74740 * 8 7 6 35 35 H 1.07997 * 120.00134 * 359.97438 * 10 9 8 36 36 H 1.07995 * 119.99809 * 180.02562 * 11 10 9 37 37 H 1.08006 * 120.00202 * 180.02562 * 12 11 10 38 38 H 1.08008 * 120.00216 * 179.72387 * 13 12 11 39 39 H 1.08003 * 120.00459 * 359.97438 * 14 9 8 40 40 H 0.96996 * 120.00093 * 184.49654 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7420 0.0011 7 7 5.4632 2.8187 0.0011 8 6 6.2004 2.7470 -1.2629 9 6 6.0798 4.0615 -1.9901 10 6 7.0738 5.0139 -1.8657 11 6 6.9634 6.2194 -2.5332 12 6 5.8591 6.4722 -3.3254 13 6 4.8625 5.5218 -3.4455 14 6 4.9752 4.3145 -2.7817 15 16 6.2835 2.9864 1.4298 16 8 7.1872 4.0680 1.2490 17 8 5.3055 2.9547 2.4602 18 6 7.2711 1.5419 1.6367 19 1 8.3484 1.6175 1.6203 20 6 6.6688 0.3153 1.8196 21 7 5.4637 0.2458 2.3417 22 14 7.5643 -1.2479 1.3258 23 1 8.3613 -1.7460 2.4756 24 1 6.5745 -2.2800 0.9254 25 1 8.4691 -0.9604 0.1839 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.9564 0.7806 -0.8892 30 1 3.9557 0.7809 0.8908 31 1 3.6102 3.2360 0.8911 32 1 3.6108 3.2363 -0.8889 33 1 5.7857 1.9505 -1.8808 34 1 7.2509 2.5395 -1.0595 35 1 7.9367 4.8162 -1.2472 36 1 7.7402 6.9633 -2.4364 37 1 5.7730 7.4139 -3.8472 38 1 3.9976 5.7211 -4.0610 39 1 4.1988 3.5701 -2.8795 40 1 5.0662 -0.6186 2.5308 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192961039.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:40:01 Heat of formation + Delta-G solvation = -145.785458 kcal Electronic energy + Delta-G solvation = -26794.014765 eV Core-core repulsion = 22893.636413 eV Total energy + Delta-G solvation = -3900.378352 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.102 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.13973 -38.99188 -36.51935 -35.63706 -35.36746 -33.96648 -33.28543 -31.92083 -30.56954 -29.85742 -27.56869 -26.28212 -25.51136 -23.08128 -22.16957 -20.96313 -20.25201 -18.67990 -17.72416 -17.13441 -16.43585 -16.32631 -16.24838 -15.85396 -15.45238 -15.13862 -14.83203 -14.45137 -14.08786 -13.70671 -13.43207 -13.16291 -13.09292 -13.00483 -12.44201 -12.27465 -12.19237 -12.08039 -11.75801 -11.72148 -11.42481 -11.13441 -10.94309 -10.79458 -10.68495 -10.64244 -10.60957 -10.25379 -10.19153 -10.13679 -10.01658 -9.55680 -8.78148 -8.59023 -8.47053 -8.17543 -6.80189 -5.44445 1.60792 1.73277 2.31145 2.56056 2.95806 3.01769 3.07180 3.12843 3.89472 4.10184 4.32859 4.66507 5.14209 5.14617 5.18258 5.19244 5.25723 5.28045 5.41427 5.47372 5.56711 5.58444 5.66219 5.78251 5.82856 5.91454 6.03984 6.15061 6.30413 6.32434 6.34206 6.46653 6.58008 6.72859 6.76410 6.81829 6.85412 7.06295 7.18886 7.32699 7.51564 8.03677 8.07193 8.72854 9.98862 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.008904 B = 0.006601 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3143.868021 B = 4241.025492 C = 6294.419690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.471 3.529 4 O -0.516 6.516 5 C -0.152 4.152 6 C 0.147 3.853 7 N -0.997 5.997 8 C 0.167 3.833 9 C -0.095 4.095 10 C -0.092 4.092 11 C -0.126 4.126 12 C -0.127 4.127 13 C -0.130 4.130 14 C -0.109 4.109 15 S 2.687 3.313 16 O -1.026 7.026 17 O -0.977 6.977 18 C -1.024 5.024 19 H 0.111 0.889 20 C 0.140 3.860 21 N -0.788 5.788 22 Si 0.889 3.111 23 H -0.268 1.268 24 H -0.273 1.273 25 H -0.258 1.258 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.146 0.854 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.132 0.868 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.575 -0.232 -10.636 11.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.315 3.685 4 O -0.404 6.404 5 C -0.191 4.191 6 C 0.020 3.980 7 N -0.827 5.827 8 C 0.041 3.959 9 C -0.097 4.097 10 C -0.110 4.110 11 C -0.144 4.144 12 C -0.145 4.145 13 C -0.148 4.148 14 C -0.127 4.127 15 S 2.790 3.210 16 O -1.016 7.016 17 O -0.968 6.968 18 C -1.159 5.159 19 H 0.129 0.871 20 C -0.082 4.082 21 N -0.415 5.415 22 Si 0.713 3.287 23 H -0.193 1.193 24 H -0.197 1.197 25 H -0.182 1.182 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.164 0.836 31 H 0.110 0.890 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.150 0.850 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.116 0.737 -10.061 11.311 hybrid contribution 0.347 -1.521 -0.429 1.618 sum -4.769 -0.785 -10.489 11.549 Atomic orbital electron populations 1.23184 0.77245 1.03167 1.02287 1.86549 1.22789 1.34147 1.84365 1.23999 0.92310 0.80908 0.71289 1.90624 1.67483 1.36281 1.46049 1.22268 0.86270 1.02433 1.08129 1.20722 0.80685 0.92892 1.03695 1.58356 1.12969 1.89686 1.21666 1.19963 0.97656 0.92632 0.85623 1.20460 0.94622 0.97796 0.96851 1.21301 0.99364 0.93003 0.97349 1.21134 0.98231 0.97273 0.97761 1.21067 0.94742 0.99003 0.99703 1.21042 0.98861 0.94295 1.00587 1.21043 0.97314 0.97250 0.97126 1.01004 0.73040 0.74914 0.72017 1.93346 1.65935 1.55979 1.86364 1.93434 1.61975 1.88415 1.52957 1.30765 1.07451 1.12539 1.65114 0.87095 1.24813 0.94080 1.00323 0.88981 1.70209 1.15211 1.28241 1.27882 0.86611 0.80701 0.80871 0.80545 1.19262 1.19740 1.18177 0.91997 0.92285 0.88555 0.88440 0.83649 0.89013 0.91159 0.90992 0.89018 0.84990 0.86399 0.86744 0.86661 0.86420 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.56 101.05 1.07 1.48 16 2 O -0.36 -5.69 10.56 -39.24 -0.41 -6.11 16 3 C 0.47 8.33 7.96 36.01 0.29 8.62 16 4 O -0.52 -9.97 15.73 -18.75 -0.29 -10.27 16 5 C -0.15 -2.74 6.13 -27.88 -0.17 -2.92 16 6 C 0.15 2.82 4.72 -4.04 -0.02 2.81 16 7 N -1.00 -20.25 2.79 -115.66 -0.32 -20.57 16 8 C 0.17 2.88 5.74 -5.19 -0.03 2.85 16 9 C -0.10 -1.58 5.35 -104.63 -0.56 -2.14 16 10 C -0.09 -1.53 9.68 -39.58 -0.38 -1.92 16 11 C -0.13 -1.83 10.05 -39.58 -0.40 -2.23 16 12 C -0.13 -1.68 10.05 -39.59 -0.40 -2.08 16 13 C -0.13 -1.74 10.05 -39.58 -0.40 -2.14 16 14 C -0.11 -1.60 8.70 -39.58 -0.34 -1.95 16 15 S 2.69 66.98 5.23 -107.50 -0.56 66.42 16 16 O -1.03 -26.88 17.77 -57.17 -1.02 -27.90 16 17 O -0.98 -27.27 15.22 -57.17 -0.87 -28.14 16 18 C -1.02 -25.84 9.52 30.60 0.29 -25.55 16 19 H 0.11 2.78 7.94 -52.48 -0.42 2.36 16 20 C 0.14 3.36 5.38 -17.82 -0.10 3.26 16 21 N -0.79 -19.29 10.01 55.43 0.55 -18.73 16 22 Si 0.89 17.91 29.61 -169.99 -5.03 12.88 16 23 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 24 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 25 H -0.26 -5.10 7.11 56.52 0.40 -4.69 16 26 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 27 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 28 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.10 1.50 8.09 -51.93 -0.42 1.08 16 30 H 0.15 3.00 5.56 -51.93 -0.29 2.71 16 31 H 0.09 1.98 7.04 -51.93 -0.37 1.61 16 32 H 0.07 1.21 6.17 -51.93 -0.32 0.89 16 33 H 0.07 1.04 8.07 -51.93 -0.42 0.62 16 34 H 0.09 1.58 7.73 -51.93 -0.40 1.18 16 35 H 0.13 2.31 8.02 -52.49 -0.42 1.88 16 36 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.11 1.21 8.06 -52.48 -0.42 0.79 16 38 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 39 H 0.12 1.56 7.34 -52.48 -0.39 1.18 16 40 H 0.29 6.37 8.32 -40.82 -0.34 6.03 16 LS Contribution 354.99 15.07 5.35 5.35 Total: -1.00 -31.51 354.99 -8.87 -40.38 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -5.11 Total: 8.58 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: -1.15 Total: -21.89 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.23 Total: -39.31 kcal Atomic # 8 Polarization: -69.81 SS G_CDS: -2.60 Total: -72.41 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Atomic # 16 Polarization: 66.98 SS G_CDS: -0.56 Total: 66.42 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.51 -8.87 -40.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192961039.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.403 kcal (2) G-P(sol) polarization free energy of solvation -31.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds