Wall clock time and date at job start Fri Apr 10 2020 18:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99948 * 2 1 4 4 H 1.48500 * 109.46780 * 239.99716 * 3 2 1 5 5 H 1.48503 * 109.47325 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47562 * 119.99875 * 3 2 1 7 7 C 1.37873 * 119.99775 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99975 * 179.97438 * 7 2 1 9 9 S 1.76195 * 120.00459 * 0.02562 * 7 2 1 10 10 O 1.42092 * 106.40429 * 66.45269 * 9 7 2 11 11 O 1.42106 * 106.40127 * 293.53418 * 9 7 2 12 12 N 1.65597 * 107.22181 * 179.97438 * 9 7 2 13 13 C 1.47151 * 120.98219 * 269.71629 * 12 9 7 14 14 C 1.53295 * 108.38744 * 230.80910 * 13 12 9 15 15 O 1.42959 * 109.22034 * 307.69425 * 14 13 12 16 16 C 1.42968 * 114.16695 * 62.58189 * 15 14 13 17 17 H 1.09000 * 109.51370 * 57.33974 * 16 15 14 18 18 C 1.52999 * 109.55381 * 177.46994 * 16 15 14 19 19 O 1.42898 * 109.46981 * 294.76979 * 18 16 15 20 20 C 1.35904 * 116.99828 * 180.02562 * 19 18 16 21 21 C 1.38736 * 120.05634 * 359.72409 * 20 19 18 22 22 C 1.38138 * 119.94246 * 179.74729 * 21 20 19 23 23 C 1.38272 * 120.05919 * 0.50761 * 22 21 20 24 24 C 1.38268 * 120.10890 * 359.76534 * 23 22 21 25 25 C 1.38151 * 120.05412 * 359.97438 * 24 23 22 26 26 C 1.47156 * 120.98532 * 89.99651 * 12 9 7 27 27 H 0.97000 * 119.99920 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.68007 * 350.53400 * 13 12 9 29 29 H 1.09000 * 109.68083 * 111.08149 * 13 12 9 30 30 H 1.08999 * 109.51139 * 187.77108 * 14 13 12 31 31 H 1.09002 * 109.55366 * 67.64120 * 14 13 12 32 32 H 1.08997 * 109.47078 * 54.77487 * 18 16 15 33 33 H 1.09005 * 109.46725 * 174.77235 * 18 16 15 34 34 H 1.07999 * 120.02513 * 359.97438 * 21 20 19 35 35 H 1.07998 * 119.97192 * 180.27768 * 22 21 20 36 36 H 1.07994 * 119.94813 * 179.74681 * 23 22 21 37 37 H 1.07992 * 119.97540 * 179.97438 * 24 23 22 38 38 H 1.07997 * 120.02770 * 179.97438 * 25 24 23 39 39 H 1.08995 * 109.67998 * 248.91818 * 26 12 9 40 40 H 1.09004 * 109.67914 * 9.46984 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1236 -2.7200 0.0005 10 8 0.4518 -2.7955 -1.2493 11 8 0.4510 -2.7950 1.2501 12 7 2.2483 -3.9354 0.0005 13 6 2.7582 -4.4956 -1.2610 14 6 2.6352 -6.0223 -1.1968 15 8 3.2531 -6.4941 0.0029 16 6 2.6397 -6.0182 1.2034 17 1 1.5865 -6.2990 1.2102 18 6 3.3408 -6.6344 2.4157 19 8 3.1264 -8.0472 2.4227 20 6 3.6862 -8.7512 3.4416 21 6 4.4313 -8.0963 4.4115 22 6 4.9948 -8.8134 5.4490 23 6 4.8257 -10.1841 5.5156 24 6 4.0882 -10.8399 4.5471 25 6 3.5181 -10.1265 3.5104 26 6 2.7629 -4.4914 1.2621 27 1 -0.4850 0.8401 -0.0004 28 1 2.1701 -4.1147 -2.0961 29 1 3.8039 -4.2166 -1.3904 30 1 3.1322 -6.4642 -2.0604 31 1 1.5822 -6.3039 -1.1991 32 1 4.4098 -6.4293 2.3603 33 1 2.9345 -6.2008 3.3296 34 1 4.5675 -7.0263 4.3574 35 1 5.5712 -8.3035 6.2067 36 1 5.2704 -10.7435 6.3252 37 1 3.9578 -11.9105 4.6010 38 1 2.9426 -10.6392 2.7540 39 1 3.8090 -4.2120 1.3867 40 1 2.1779 -4.1077 2.0980 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192963059.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:40:03 Heat of formation + Delta-G solvation = -166.200942 kcal Electronic energy + Delta-G solvation = -25677.051974 eV Core-core repulsion = 21775.788341 eV Total energy + Delta-G solvation = -3901.263633 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.102 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.18374 -40.21804 -38.23300 -37.54367 -36.21595 -35.74847 -35.14608 -33.56377 -31.87891 -30.73684 -29.07768 -28.27758 -26.71555 -24.52630 -23.41204 -22.78343 -21.94288 -20.82547 -19.39977 -19.06837 -18.46750 -17.93760 -17.25475 -17.18823 -16.73559 -16.68336 -16.22877 -16.08310 -15.85656 -15.67946 -15.27660 -15.18517 -15.00922 -14.29596 -13.99919 -13.90315 -13.60216 -13.44988 -13.38018 -13.02063 -12.91179 -12.80771 -12.56871 -12.43030 -12.39197 -12.34336 -12.22804 -12.01270 -11.71145 -11.48670 -11.25911 -11.22907 -10.97830 -9.91366 -9.76251 -9.13729 -8.77290 -7.52138 0.18169 0.43263 0.53153 1.32848 1.34742 1.48084 2.09449 2.18738 2.55161 2.58532 2.70554 2.89066 3.69776 3.70839 3.74830 3.85885 3.95948 3.98648 4.05357 4.16277 4.21404 4.29517 4.33753 4.37272 4.45136 4.50772 4.54166 4.59781 4.67030 4.74815 4.81475 4.94842 5.09360 5.12902 5.26808 5.40532 5.52162 5.63918 5.75679 5.86853 5.90295 6.05133 6.46821 6.75084 8.17671 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.022339 B = 0.002847 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.131530 B = 9832.255267 C =10442.757731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.070 3.930 3 Si 0.990 3.010 4 H -0.251 1.251 5 H -0.264 1.264 6 H -0.249 1.249 7 C -1.039 5.039 8 H 0.120 0.880 9 S 2.718 3.282 10 O -1.036 7.036 11 O -1.036 7.036 12 N -1.012 6.012 13 C 0.079 3.921 14 C 0.053 3.947 15 O -0.375 6.375 16 C 0.084 3.916 17 H 0.058 0.942 18 C 0.073 3.927 19 O -0.327 6.327 20 C 0.107 3.893 21 C -0.222 4.222 22 C -0.086 4.086 23 C -0.165 4.165 24 C -0.084 4.084 25 C -0.173 4.173 26 C 0.094 3.906 27 H 0.299 0.701 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.140 0.860 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.139 0.861 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.152 0.848 38 H 0.129 0.871 39 H 0.099 0.901 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.659 -15.857 7.371 21.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.143 4.143 3 Si 0.808 3.192 4 H -0.174 1.174 5 H -0.188 1.188 6 H -0.173 1.173 7 C -1.172 5.172 8 H 0.138 0.862 9 S 2.821 3.179 10 O -1.026 7.026 11 O -1.026 7.026 12 N -0.850 5.850 13 C -0.046 4.046 14 C -0.025 4.025 15 O -0.294 6.294 16 C 0.024 3.976 17 H 0.076 0.924 18 C -0.002 4.002 19 O -0.241 6.241 20 C 0.062 3.938 21 C -0.241 4.241 22 C -0.104 4.104 23 C -0.183 4.183 24 C -0.101 4.101 25 C -0.191 4.191 26 C -0.032 4.032 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.157 0.843 31 H 0.065 0.935 32 H 0.108 0.892 33 H 0.115 0.885 34 H 0.156 0.844 35 H 0.165 0.835 36 H 0.166 0.834 37 H 0.170 0.830 38 H 0.147 0.853 39 H 0.117 0.883 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.561 -16.113 7.192 21.095 hybrid contribution 0.099 1.609 -0.183 1.622 sum 11.660 -14.505 7.008 19.886 Atomic orbital electron populations 1.69981 1.08779 1.32478 1.41320 1.26028 0.95375 1.05379 0.87509 0.85162 0.78783 0.74463 0.80798 1.17421 1.18842 1.17262 1.30910 1.07127 1.12392 1.66782 0.86218 1.00080 0.72595 0.73660 0.71597 1.93293 1.74270 1.88213 1.46848 1.93294 1.74263 1.88219 1.46825 1.57828 1.62028 1.53440 1.11717 1.22260 1.01506 0.95302 0.85576 1.23093 0.98580 0.92529 0.88335 1.87927 1.56836 1.71156 1.13475 1.22363 0.97228 0.92416 0.85614 0.92378 1.22798 1.01967 0.78525 0.96929 1.86068 1.71354 1.20884 1.45767 1.19391 0.94077 0.92344 0.88007 1.21549 1.03550 1.01495 0.97461 1.21320 0.97441 0.94682 0.96943 1.21445 1.01432 0.94749 1.00654 1.21302 0.95210 1.00983 0.92636 1.20706 1.05398 0.91036 1.01997 1.21977 1.02072 0.92766 0.86410 0.89041 0.88989 0.88912 0.84270 0.93500 0.89218 0.88451 0.84355 0.83543 0.83430 0.83015 0.85276 0.88318 0.88606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.87 13.19 21.45 0.28 -52.59 16 2 C 0.07 3.84 5.46 84.65 0.46 4.31 16 3 Si 0.99 40.51 29.54 68.60 2.03 42.53 16 4 H -0.25 -9.63 7.11 99.48 0.71 -8.93 16 5 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 6 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 7 C -1.04 -56.16 9.74 67.73 0.66 -55.50 16 8 H 0.12 5.81 7.81 -2.91 -0.02 5.79 16 9 S 2.72 144.30 5.03 -56.49 -0.28 144.01 16 10 O -1.04 -60.76 16.63 -128.00 -2.13 -62.89 16 11 O -1.04 -60.47 16.64 -128.00 -2.13 -62.60 16 12 N -1.01 -40.14 3.34 -511.61 -1.71 -41.85 16 13 C 0.08 2.57 6.71 86.35 0.58 3.15 16 14 C 0.05 1.46 6.98 72.08 0.50 1.96 16 15 O -0.38 -11.19 10.36 -144.75 -1.50 -12.69 16 16 C 0.08 2.48 3.06 30.69 0.09 2.58 16 17 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 18 C 0.07 1.77 4.41 71.98 0.32 2.08 16 19 O -0.33 -8.98 10.11 -88.23 -0.89 -9.87 16 20 C 0.11 2.58 6.69 22.51 0.15 2.73 16 21 C -0.22 -4.47 9.04 22.37 0.20 -4.26 16 22 C -0.09 -1.40 10.04 22.25 0.22 -1.17 16 23 C -0.16 -2.43 10.04 22.28 0.22 -2.21 16 24 C -0.08 -1.35 10.04 22.26 0.22 -1.13 16 25 C -0.17 -3.68 9.99 22.37 0.22 -3.46 16 26 C 0.09 3.06 6.00 86.35 0.52 3.58 16 27 H 0.30 15.92 8.31 -92.71 -0.77 15.15 16 28 H 0.09 3.22 6.94 -2.38 -0.02 3.21 16 29 H 0.09 2.57 8.14 -2.39 -0.02 2.56 16 30 H 0.14 2.82 8.14 -2.39 -0.02 2.81 16 31 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.09 1.86 7.65 -2.39 -0.02 1.84 16 33 H 0.10 2.00 7.67 -2.38 -0.02 1.98 16 34 H 0.14 2.38 6.30 -2.91 -0.02 2.36 16 35 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 36 H 0.15 1.35 8.06 -2.91 -0.02 1.32 16 37 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 38 H 0.13 2.60 8.06 -2.91 -0.02 2.58 16 39 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 40 H 0.10 3.31 6.95 -2.39 -0.02 3.30 16 Total: -1.00 -77.69 348.93 -0.90 -78.59 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: 1.05 Total: 24.69 kcal Atomic # 6 Polarization: -51.72 SS G_CDS: 4.38 Total: -47.33 kcal Atomic # 7 Polarization: -93.01 SS G_CDS: -1.43 Total: -94.44 kcal Atomic # 8 Polarization: -141.41 SS G_CDS: -6.65 Total: -148.06 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.53 kcal Atomic # 16 Polarization: 144.30 SS G_CDS: -0.28 Total: 144.01 kcal Total: -77.69 -0.90 -78.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192963059.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.608 kcal (2) G-P(sol) polarization free energy of solvation -77.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds