Wall clock time and date at job start Fri Apr 10 2020 18:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00202 * 2 1 4 4 H 1.48500 * 109.47270 * 239.99459 * 3 2 1 5 5 H 1.48492 * 109.47152 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47148 * 119.99547 * 3 2 1 7 7 C 1.38810 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00768 * 189.09983 * 7 2 1 9 9 N 1.36937 * 119.99994 * 9.10173 * 7 2 1 10 10 C 1.48147 * 127.83809 * 15.59663 * 9 7 2 11 11 C 1.54384 * 104.62345 * 140.39531 * 10 9 7 12 12 H 1.08998 * 118.18370 * 244.20630 * 11 10 9 13 13 C 1.52997 * 118.12809 * 87.18511 * 11 10 9 14 14 H 1.09000 * 117.43972 * 16.11083 * 13 11 10 15 15 C 1.52995 * 117.44450 * 160.85582 * 13 11 10 16 16 N 1.46504 * 109.47265 * 185.00488 * 15 13 11 17 17 C 1.34779 * 120.00099 * 180.02562 * 16 15 13 18 18 O 1.21585 * 119.99776 * 0.02562 * 17 16 15 19 19 C 1.47535 * 119.99987 * 179.97438 * 17 16 15 20 20 C 1.39414 * 120.75042 * 359.97438 * 19 17 16 21 21 N 1.31917 * 121.01036 * 179.97438 * 20 19 17 22 22 C 1.31798 * 122.60209 * 0.02562 * 21 20 19 23 23 C 1.39438 * 120.63153 * 359.97438 * 22 21 20 24 24 N 1.35706 * 134.43089 * 179.97438 * 23 22 21 25 25 C 1.30126 * 109.50032 * 180.02562 * 24 23 22 26 26 N 1.36256 * 110.06012 * 359.97438 * 25 24 23 27 27 H 0.96999 * 126.30127 * 180.02562 * 26 25 24 28 28 C 1.36926 * 107.40391 * 359.76649 * 26 25 24 29 29 C 1.52995 * 60.55945 * 268.46233 * 13 11 10 30 30 H 1.09002 * 119.54474 * 248.23140 * 29 13 11 31 31 C 1.48148 * 127.84258 * 195.56925 * 9 7 2 32 32 H 0.96999 * 119.99692 * 0.02562 * 1 2 3 33 33 H 1.09001 * 110.40668 * 21.60668 * 10 9 7 34 34 H 1.09010 * 110.40639 * 259.17891 * 10 9 7 35 35 H 1.09002 * 109.47370 * 305.00262 * 15 13 11 36 36 H 1.09002 * 109.47586 * 65.00415 * 15 13 11 37 37 H 0.96999 * 120.00147 * 359.97438 * 16 15 13 38 38 H 1.07988 * 119.49664 * 359.95877 * 20 19 17 39 39 H 1.08004 * 119.68029 * 180.02562 * 22 21 20 40 40 H 1.07997 * 124.97380 * 179.97438 * 25 24 23 41 41 H 1.09000 * 110.41069 * 100.81896 * 31 9 7 42 42 H 1.09009 * 110.50408 * 338.43711 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0800 -1.2081 0.1485 9 7 1.3384 -2.3806 -0.1865 10 6 -0.0341 -2.5710 -0.7107 11 6 0.0641 -3.8172 -1.6168 12 1 -0.1225 -3.6939 -2.6836 13 6 -0.1181 -5.1931 -0.9732 14 1 -0.5682 -5.2280 0.0190 15 6 -0.4659 -6.3628 -1.8961 16 7 -0.7165 -7.5615 -1.0920 17 6 -1.0421 -8.7219 -1.6954 18 8 -1.1274 -8.7738 -2.9072 19 6 -1.2940 -9.9292 -0.8857 20 6 -1.1990 -9.8876 0.5046 21 7 -1.4235 -10.9639 1.2336 22 6 -1.7458 -12.1265 0.7030 23 6 -1.8653 -12.2680 -0.6791 24 7 -2.1725 -13.2997 -1.5054 25 6 -2.1452 -12.8902 -2.7402 26 7 -1.8191 -11.5681 -2.7871 27 1 -1.7329 -11.0259 -3.5867 28 6 -1.6412 -11.1442 -1.4973 29 6 1.2863 -4.5975 -1.0897 30 1 2.0101 -5.0555 -1.7639 31 6 1.8194 -3.7546 0.0888 32 1 -0.4849 0.8401 -0.0004 33 1 -0.3430 -1.7020 -1.2916 34 1 -0.7319 -2.7500 0.1074 35 1 -1.3586 -6.1184 -2.4718 36 1 0.3654 -6.5487 -2.5761 37 1 -0.6474 -7.5203 -0.1253 38 1 -0.9373 -8.9603 0.9922 39 1 -1.9199 -12.9775 1.3449 40 1 -2.3509 -13.5079 -3.6019 41 1 1.4111 -4.1185 1.0316 42 1 2.9089 -3.7802 0.1121 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978228148.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:48 Heat of formation + Delta-G solvation = 109.460174 kcal Electronic energy + Delta-G solvation = -26092.574119 eV Core-core repulsion = 22268.238694 eV Total energy + Delta-G solvation = -3824.335425 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.144 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.86987 -40.08048 -38.93866 -38.55165 -35.19871 -33.75562 -33.42546 -31.75586 -30.90395 -30.33296 -27.55731 -27.16594 -25.41805 -24.45505 -23.52326 -22.55705 -21.24576 -21.01246 -19.98131 -19.32356 -19.01161 -18.08288 -17.62480 -16.85327 -16.30689 -16.12496 -15.63263 -15.29495 -15.25919 -14.91656 -14.50064 -14.36614 -14.00073 -13.73240 -13.44046 -13.17305 -12.98256 -12.83272 -12.70637 -11.91250 -11.34561 -11.30776 -11.16294 -10.91991 -10.85087 -10.78425 -10.69245 -10.35509 -10.19582 -9.92069 -9.77539 -9.61734 -9.50420 -9.22696 -9.09590 -8.83083 -8.67529 -6.90798 -5.83276 -3.17748 -0.06680 0.92440 2.02064 2.39808 2.69171 2.82126 3.36490 3.41240 3.42326 3.46936 3.61129 3.89077 4.04788 4.07785 4.38945 4.43311 4.51954 4.66008 4.75070 4.81582 5.15751 5.20848 5.31806 5.38093 5.42929 5.49138 5.68656 5.73329 5.78656 5.83541 5.90145 5.94239 6.15337 6.17161 6.48758 6.59969 6.64911 6.75435 6.86233 7.13859 7.20350 7.30949 7.48617 7.48745 7.67762 7.85170 8.17268 9.07440 9.70262 10.46898 11.30990 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.034996 B = 0.001994 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.897485 B =14041.316740 C =14476.414865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.006 4.006 3 Si 0.914 3.086 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.228 4.228 8 H 0.076 0.924 9 N -0.594 5.594 10 C 0.183 3.817 11 C -0.160 4.160 12 H 0.103 0.897 13 C -0.153 4.153 14 H 0.105 0.895 15 C 0.155 3.845 16 N -0.712 5.712 17 C 0.566 3.434 18 O -0.553 6.553 19 C -0.179 4.179 20 C 0.143 3.857 21 N -0.488 5.488 22 C 0.201 3.799 23 C -0.019 4.019 24 N -0.478 5.478 25 C 0.265 3.735 26 N -0.578 5.578 27 H 0.438 0.562 28 C 0.129 3.871 29 C -0.171 4.171 30 H 0.103 0.897 31 C 0.154 3.846 32 H 0.255 0.745 33 H 0.090 0.910 34 H 0.024 0.976 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.403 0.597 38 H 0.168 0.832 39 H 0.172 0.828 40 H 0.225 0.775 41 H 0.025 0.975 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.930 -24.876 -4.042 25.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.356 4.356 8 H 0.094 0.906 9 N -0.318 5.318 10 C 0.058 3.942 11 C -0.181 4.181 12 H 0.121 0.879 13 C -0.172 4.172 14 H 0.122 0.878 15 C 0.032 3.968 16 N -0.363 5.363 17 C 0.353 3.647 18 O -0.432 6.432 19 C -0.188 4.188 20 C -0.010 4.010 21 N -0.197 5.197 22 C 0.035 3.965 23 C -0.140 4.140 24 N -0.197 5.197 25 C -0.023 4.023 26 N -0.189 5.189 27 H 0.280 0.720 28 C 0.007 3.993 29 C -0.191 4.191 30 H 0.121 0.879 31 C 0.027 3.973 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.042 0.958 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.239 0.761 38 H 0.185 0.815 39 H 0.189 0.811 40 H 0.241 0.759 41 H 0.042 0.958 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.092 -25.266 -3.653 26.031 hybrid contribution 0.598 1.824 -1.310 2.324 sum -4.494 -23.442 -4.963 24.379 Atomic orbital electron populations 1.69883 1.05062 1.25590 1.55657 1.24901 0.95660 0.98010 1.01699 0.86183 0.78553 0.82892 0.78031 1.21072 1.21526 1.20953 1.18948 0.90790 0.82360 1.43550 0.90617 1.45196 1.13341 0.99998 1.73225 1.21071 0.86879 0.92693 0.93574 1.24242 1.02078 0.91649 1.00099 0.87874 1.22532 1.00570 0.93764 1.00311 0.87751 1.20942 1.01298 0.81832 0.92708 1.45926 1.69729 1.09515 1.11092 1.17881 0.76828 0.82761 0.87226 1.90710 1.53216 1.85384 1.13928 1.19964 1.11544 0.92304 0.94943 1.22843 0.92595 0.97367 0.88157 1.67736 1.14117 0.98758 1.39127 1.22384 0.89624 0.95287 0.89175 1.20206 1.08096 0.89863 0.95833 1.70496 1.20860 1.28636 0.99739 1.25687 0.96925 0.82192 0.97479 1.43247 1.56399 1.11438 1.07843 0.71995 1.18690 0.99675 0.95106 0.85796 1.24007 0.89747 1.02549 1.02751 0.87912 1.21144 0.97196 0.86008 0.92931 0.93472 0.89156 0.95807 0.90818 0.91136 0.76102 0.81459 0.81100 0.75896 0.95768 0.93156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.44 10.87 55.49 0.60 -25.84 16 2 C -0.01 -0.15 5.40 -17.43 -0.09 -0.25 16 3 Si 0.91 21.68 29.56 -169.99 -5.03 16.66 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.23 -6.27 10.35 -15.06 -0.16 -6.43 16 8 H 0.08 2.01 7.85 -52.49 -0.41 1.59 16 9 N -0.59 -14.90 3.38 -168.85 -0.57 -15.47 16 10 C 0.18 4.27 5.70 -2.41 -0.01 4.26 16 11 C -0.16 -2.88 6.85 -89.22 -0.61 -3.49 16 12 H 0.10 1.76 8.14 -51.93 -0.42 1.33 16 13 C -0.15 -2.17 5.39 -90.63 -0.49 -2.66 16 14 H 0.10 1.46 8.04 -51.93 -0.42 1.04 16 15 C 0.15 1.91 5.95 -4.04 -0.02 1.88 16 16 N -0.71 -7.51 5.51 -61.35 -0.34 -7.85 16 17 C 0.57 6.66 7.77 -12.47 -0.10 6.57 16 18 O -0.55 -7.81 15.52 5.29 0.08 -7.72 16 19 C -0.18 -1.87 5.89 -104.86 -0.62 -2.49 16 20 C 0.14 1.30 10.71 -17.08 -0.18 1.12 16 21 N -0.49 -4.80 10.30 -12.64 -0.13 -4.93 16 22 C 0.20 1.83 11.25 -17.12 -0.19 1.64 16 23 C -0.02 -0.20 7.27 -84.73 -0.62 -0.81 16 24 N -0.48 -4.53 11.28 -12.01 -0.14 -4.67 16 25 C 0.27 1.72 12.97 -89.57 -1.16 0.56 16 26 N -0.58 -4.70 6.02 -11.51 -0.07 -4.77 16 27 H 0.44 3.16 7.92 -40.82 -0.32 2.84 16 28 C 0.13 1.35 6.93 -83.81 -0.58 0.77 16 29 C -0.17 -2.85 6.74 -89.22 -0.60 -3.45 16 30 H 0.10 1.59 8.12 -51.93 -0.42 1.17 16 31 C 0.15 3.09 7.04 -2.41 -0.02 3.08 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.09 2.37 6.51 -51.93 -0.34 2.03 16 34 H 0.02 0.58 8.14 -51.92 -0.42 0.16 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.07 0.91 7.93 -51.93 -0.41 0.50 16 37 H 0.40 3.33 6.47 -40.82 -0.26 3.07 16 38 H 0.17 1.08 6.42 -52.49 -0.34 0.75 16 39 H 0.17 1.10 8.06 -52.48 -0.42 0.68 16 40 H 0.22 0.30 8.06 -52.49 -0.42 -0.12 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 LS Contribution 354.38 15.07 5.34 5.34 Total: -1.00 -34.23 354.38 -10.72 -44.95 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -5.02 Total: 4.00 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -5.46 Total: 0.30 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: -0.64 Total: -63.51 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: 0.08 Total: -7.72 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.23 -10.72 -44.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978228148.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.409 kcal (2) G-P(sol) polarization free energy of solvation -34.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds