Wall clock time and date at job start Fri Apr 10 2020 18:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00202 * 2 1 4 4 H 1.48500 * 109.47270 * 239.99459 * 3 2 1 5 5 H 1.48492 * 109.47152 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47148 * 119.99547 * 3 2 1 7 7 C 1.38810 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00768 * 189.09983 * 7 2 1 9 9 N 1.36937 * 119.99994 * 9.10173 * 7 2 1 10 10 C 1.48147 * 127.83809 * 15.59663 * 9 7 2 11 11 C 1.54384 * 104.62345 * 140.39531 * 10 9 7 12 12 H 1.08998 * 118.18370 * 244.20630 * 11 10 9 13 13 C 1.52997 * 118.12809 * 87.18511 * 11 10 9 14 14 H 1.09000 * 117.43972 * 16.11083 * 13 11 10 15 15 C 1.52995 * 117.44450 * 160.85582 * 13 11 10 16 16 N 1.46504 * 109.47265 * 185.00488 * 15 13 11 17 17 C 1.34779 * 120.00099 * 180.02562 * 16 15 13 18 18 O 1.21585 * 119.99776 * 0.02562 * 17 16 15 19 19 C 1.47535 * 119.99987 * 179.97438 * 17 16 15 20 20 C 1.39414 * 120.75042 * 359.97438 * 19 17 16 21 21 N 1.31917 * 121.01036 * 179.97438 * 20 19 17 22 22 C 1.31798 * 122.60209 * 0.02562 * 21 20 19 23 23 C 1.39438 * 120.63153 * 359.97438 * 22 21 20 24 24 N 1.35706 * 134.43089 * 179.97438 * 23 22 21 25 25 C 1.30126 * 109.50032 * 180.02562 * 24 23 22 26 26 N 1.36256 * 110.06012 * 359.97438 * 25 24 23 27 27 H 0.96999 * 126.30127 * 180.02562 * 26 25 24 28 28 C 1.36926 * 107.40391 * 359.76649 * 26 25 24 29 29 C 1.52995 * 60.55945 * 268.46233 * 13 11 10 30 30 H 1.09002 * 119.54474 * 248.23140 * 29 13 11 31 31 C 1.48148 * 127.84258 * 195.56925 * 9 7 2 32 32 H 0.96999 * 119.99692 * 0.02562 * 1 2 3 33 33 H 1.09001 * 110.40668 * 21.60668 * 10 9 7 34 34 H 1.09010 * 110.40639 * 259.17891 * 10 9 7 35 35 H 1.09002 * 109.47370 * 305.00262 * 15 13 11 36 36 H 1.09002 * 109.47586 * 65.00415 * 15 13 11 37 37 H 0.96999 * 120.00147 * 359.97438 * 16 15 13 38 38 H 1.07988 * 119.49664 * 359.95877 * 20 19 17 39 39 H 1.08004 * 119.68029 * 180.02562 * 22 21 20 40 40 H 1.07997 * 124.97380 * 179.97438 * 25 24 23 41 41 H 1.09000 * 110.41069 * 100.81896 * 31 9 7 42 42 H 1.09009 * 110.50408 * 338.43711 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0800 -1.2081 0.1485 9 7 1.3384 -2.3806 -0.1865 10 6 -0.0341 -2.5710 -0.7107 11 6 0.0641 -3.8172 -1.6168 12 1 -0.1225 -3.6939 -2.6836 13 6 -0.1181 -5.1931 -0.9732 14 1 -0.5682 -5.2280 0.0190 15 6 -0.4659 -6.3628 -1.8961 16 7 -0.7165 -7.5615 -1.0920 17 6 -1.0421 -8.7219 -1.6954 18 8 -1.1274 -8.7738 -2.9072 19 6 -1.2940 -9.9292 -0.8857 20 6 -1.1990 -9.8876 0.5046 21 7 -1.4235 -10.9639 1.2336 22 6 -1.7458 -12.1265 0.7030 23 6 -1.8653 -12.2680 -0.6791 24 7 -2.1725 -13.2997 -1.5054 25 6 -2.1452 -12.8902 -2.7402 26 7 -1.8191 -11.5681 -2.7871 27 1 -1.7329 -11.0259 -3.5867 28 6 -1.6412 -11.1442 -1.4973 29 6 1.2863 -4.5975 -1.0897 30 1 2.0101 -5.0555 -1.7639 31 6 1.8194 -3.7546 0.0888 32 1 -0.4849 0.8401 -0.0004 33 1 -0.3430 -1.7020 -1.2916 34 1 -0.7319 -2.7500 0.1074 35 1 -1.3586 -6.1184 -2.4718 36 1 0.3654 -6.5487 -2.5761 37 1 -0.6474 -7.5203 -0.1253 38 1 -0.9373 -8.9603 0.9922 39 1 -1.9199 -12.9775 1.3449 40 1 -2.3509 -13.5079 -3.6019 41 1 1.4111 -4.1185 1.0316 42 1 2.9089 -3.7802 0.1121 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978228148.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:47 Heat of formation + Delta-G solvation = 86.303044 kcal Electronic energy + Delta-G solvation = -26093.578288 eV Core-core repulsion = 22268.238694 eV Total energy + Delta-G solvation = -3825.339594 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.144 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.50252 -41.03739 -40.24775 -39.35520 -36.42776 -35.08409 -34.36995 -32.89441 -32.22885 -31.08880 -28.98252 -28.78124 -26.87101 -25.41959 -24.21169 -23.32578 -22.75811 -22.01617 -21.21512 -20.83591 -19.68584 -18.91281 -18.76028 -18.34276 -17.25642 -16.86680 -16.73539 -16.39952 -16.16131 -15.97203 -15.88963 -15.35395 -15.13183 -14.85405 -14.62547 -14.48842 -14.24976 -13.99409 -13.62409 -13.35430 -13.17832 -12.89750 -12.68900 -12.34893 -12.01545 -11.99172 -11.95846 -11.79970 -11.72436 -11.43791 -10.96355 -10.72192 -10.70970 -10.52209 -10.31027 -10.09811 -9.51092 -8.90262 -7.91857 -5.27816 -0.74682 0.22704 1.36574 1.46156 1.49145 1.55659 1.82406 1.92154 1.93695 2.47617 2.71839 2.76172 3.05022 3.22176 3.26109 3.44033 3.60308 3.69520 3.74465 3.83616 3.86606 4.07680 4.19453 4.20562 4.27968 4.43036 4.55049 4.56235 4.63245 4.71116 4.85623 4.94361 5.03867 5.09037 5.13817 5.31103 5.34478 5.39001 5.45063 5.54133 5.67084 6.18520 6.20875 6.36395 6.54854 6.81603 7.00127 7.01422 7.68822 8.46804 9.21615 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.034996 B = 0.001994 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.897485 B =14041.316740 C =14476.414865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.064 4.064 3 Si 0.979 3.021 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.274 1.274 7 C -0.241 4.241 8 H 0.080 0.920 9 N -0.621 5.621 10 C 0.188 3.812 11 C -0.175 4.175 12 H 0.114 0.886 13 C -0.110 4.110 14 H 0.112 0.888 15 C 0.165 3.835 16 N -0.704 5.704 17 C 0.569 3.431 18 O -0.579 6.579 19 C -0.192 4.192 20 C 0.146 3.854 21 N -0.502 5.502 22 C 0.199 3.801 23 C -0.034 4.034 24 N -0.507 5.507 25 C 0.282 3.718 26 N -0.579 5.579 27 H 0.441 0.559 28 C 0.109 3.891 29 C -0.160 4.160 30 H 0.124 0.876 31 C 0.147 3.853 32 H 0.250 0.750 33 H 0.051 0.949 34 H 0.003 0.997 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.415 0.585 38 H 0.191 0.809 39 H 0.193 0.807 40 H 0.272 0.728 41 H 0.029 0.971 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.408 -26.840 -4.491 27.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.257 4.257 3 Si 0.807 3.193 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.200 1.200 7 C -0.370 4.370 8 H 0.098 0.902 9 N -0.346 5.346 10 C 0.063 3.937 11 C -0.196 4.196 12 H 0.132 0.868 13 C -0.129 4.129 14 H 0.130 0.870 15 C 0.042 3.958 16 N -0.355 5.355 17 C 0.357 3.643 18 O -0.461 6.461 19 C -0.201 4.201 20 C -0.007 4.007 21 N -0.212 5.212 22 C 0.034 3.966 23 C -0.155 4.155 24 N -0.227 5.227 25 C -0.005 4.005 26 N -0.190 5.190 27 H 0.284 0.716 28 C -0.014 4.014 29 C -0.180 4.180 30 H 0.142 0.858 31 C 0.022 3.978 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.021 0.979 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.253 0.747 38 H 0.208 0.792 39 H 0.209 0.791 40 H 0.287 0.713 41 H 0.047 0.953 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.554 -27.271 -4.080 27.948 hybrid contribution 0.419 2.325 -1.163 2.633 sum -4.135 -24.946 -5.243 25.824 Atomic orbital electron populations 1.70081 1.06461 1.25781 1.57134 1.25735 0.96520 1.01277 1.02189 0.85148 0.77222 0.78612 0.78319 1.20392 1.22009 1.20017 1.19334 0.91318 0.83720 1.42615 0.90241 1.45528 1.13932 1.01239 1.73870 1.20804 0.85981 0.93747 0.93197 1.23912 1.04576 0.91255 0.99837 0.86829 1.22424 0.98023 0.92009 1.00454 0.86987 1.20729 1.01372 0.81527 0.92192 1.45754 1.69397 1.08693 1.11647 1.18033 0.76229 0.83134 0.86954 1.90693 1.54494 1.85819 1.15087 1.19901 1.13007 0.91839 0.95313 1.23211 0.91567 0.98073 0.87812 1.67808 1.14821 0.99171 1.39353 1.22769 0.88687 0.95758 0.89371 1.20450 1.08512 0.90148 0.96366 1.70509 1.22532 1.28868 1.00826 1.26680 0.94109 0.81739 0.97998 1.43373 1.56239 1.12066 1.07306 0.71588 1.18973 1.00153 0.95373 0.86885 1.23926 0.90576 1.02217 1.01249 0.85784 1.21309 0.97700 0.84276 0.94495 0.94136 0.93006 0.97889 0.90824 0.90945 0.74653 0.79185 0.79054 0.71250 0.95278 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.51 10.87 21.65 0.24 -56.27 16 2 C -0.06 -3.58 5.40 84.86 0.46 -3.13 16 3 Si 0.98 45.20 29.56 68.60 2.03 47.23 16 4 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 7 C -0.24 -13.41 10.35 84.03 0.87 -12.54 16 8 H 0.08 4.22 7.85 -2.91 -0.02 4.20 16 9 N -0.62 -31.53 3.38 -688.12 -2.33 -33.85 16 10 C 0.19 9.00 5.70 86.53 0.49 9.49 16 11 C -0.18 -6.16 6.85 -9.89 -0.07 -6.23 16 12 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 13 C -0.11 -2.87 5.39 -10.80 -0.06 -2.93 16 14 H 0.11 2.84 8.04 -2.39 -0.02 2.82 16 15 C 0.17 3.63 5.95 86.38 0.51 4.14 16 16 N -0.70 -13.07 5.51 -466.27 -2.57 -15.64 16 17 C 0.57 12.38 7.77 86.70 0.67 13.06 16 18 O -0.58 -15.53 15.52 -3.98 -0.06 -15.59 16 19 C -0.19 -3.74 5.89 -20.02 -0.12 -3.86 16 20 C 0.15 2.42 10.71 84.96 0.91 3.33 16 21 N -0.50 -9.17 10.30 -193.92 -2.00 -11.17 16 22 C 0.20 3.40 11.25 84.99 0.96 4.36 16 23 C -0.03 -0.66 7.27 39.46 0.29 -0.38 16 24 N -0.51 -8.84 11.28 -191.91 -2.17 -11.00 16 25 C 0.28 3.02 12.97 179.98 2.34 5.35 16 26 N -0.58 -8.51 6.02 -190.33 -1.15 -9.65 16 27 H 0.44 5.76 7.92 -92.71 -0.73 5.02 16 28 C 0.11 2.15 6.93 39.50 0.27 2.42 16 29 C -0.16 -5.01 6.74 -9.89 -0.07 -5.08 16 30 H 0.12 3.43 8.12 -2.39 -0.02 3.41 16 31 C 0.15 5.79 7.04 86.54 0.61 6.40 16 32 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 33 H 0.05 2.85 6.51 -2.39 -0.02 2.83 16 34 H 0.00 0.16 8.14 -2.38 -0.02 0.14 16 35 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.07 1.65 7.93 -2.39 -0.02 1.63 16 37 H 0.42 5.65 6.47 -92.71 -0.60 5.05 16 38 H 0.19 2.00 6.42 -2.92 -0.02 1.98 16 39 H 0.19 2.22 8.06 -2.91 -0.02 2.19 16 40 H 0.27 -0.25 8.06 -2.91 -0.02 -0.27 16 41 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 Total: -1.00 -76.14 354.38 -0.17 -76.31 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -0.24 Total: 15.22 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 8.07 Total: 14.41 kcal Atomic # 7 Polarization: -127.62 SS G_CDS: -9.97 Total: -137.58 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.06 Total: -15.59 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -76.14 -0.17 -76.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978228148.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.614 kcal (2) G-P(sol) polarization free energy of solvation -76.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds