Wall clock time and date at job start Fri Apr 10 2020 18:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00502 * 2 1 4 4 H 1.48505 * 109.47232 * 270.00120 * 3 2 1 5 5 H 1.48504 * 109.47095 * 29.99860 * 3 2 1 6 6 H 1.48496 * 109.47520 * 149.99884 * 3 2 1 7 7 C 1.38812 * 119.99349 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99893 * 170.57239 * 7 2 1 9 9 N 1.36936 * 120.00328 * 350.56716 * 7 2 1 10 10 C 1.48144 * 127.84028 * 164.34171 * 9 7 2 11 11 C 1.57690 * 104.67503 * 139.77280 * 10 9 7 12 12 H 1.09011 * 120.32309 * 244.63909 * 11 10 9 13 13 C 1.52999 * 116.11018 * 87.30836 * 11 10 9 14 14 H 1.09001 * 117.40848 * 16.95528 * 13 11 10 15 15 C 1.53005 * 117.44154 * 161.63622 * 13 11 10 16 16 N 1.46501 * 109.46906 * 244.24035 * 15 13 11 17 17 C 1.34777 * 119.99644 * 180.02562 * 16 15 13 18 18 O 1.21685 * 120.00480 * 359.97438 * 17 16 15 19 19 C 1.46812 * 119.99992 * 180.02562 * 17 16 15 20 20 C 1.40422 * 126.54101 * 0.02562 * 19 17 16 21 21 N 1.30973 * 108.76557 * 179.97438 * 20 19 17 22 22 N 1.39713 * 109.48833 * 0.02562 * 21 20 19 23 23 C 1.36356 * 133.19344 * 180.02562 * 22 21 20 24 24 C 1.35290 * 119.80841 * 179.97438 * 23 22 21 25 25 N 1.33248 * 121.27586 * 359.97438 * 24 23 22 26 26 C 1.31407 * 121.07653 * 0.02562 * 25 24 23 27 27 C 1.36820 * 107.96959 * 359.97438 * 22 21 20 28 28 C 1.52993 * 60.55708 * 269.28624 * 13 11 10 29 29 H 1.08998 * 119.54059 * 248.23298 * 28 13 11 30 30 C 1.48148 * 127.83747 * 344.33979 * 9 7 2 31 31 H 0.97011 * 119.99558 * 359.97438 * 1 2 3 32 32 H 1.08998 * 110.40740 * 259.19734 * 10 9 7 33 33 H 1.09004 * 110.40633 * 21.50830 * 10 9 7 34 34 H 1.09002 * 109.46826 * 124.24284 * 15 13 11 35 35 H 1.08996 * 109.47193 * 4.24123 * 15 13 11 36 36 H 0.96995 * 120.00615 * 359.97438 * 16 15 13 37 37 H 1.07993 * 125.61380 * 0.26698 * 20 19 17 38 38 H 1.08005 * 120.09147 * 359.93542 * 23 22 21 39 39 H 1.07998 * 119.36179 * 179.97438 * 24 23 22 40 40 H 1.07995 * 120.17842 * 180.02562 * 26 25 24 41 41 H 1.08994 * 110.40455 * 100.80144 * 30 9 7 42 42 H 1.08996 * 110.40456 * 338.36708 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0791 -1.2086 -0.1537 9 7 1.3392 -2.3802 0.1933 10 6 1.8181 -3.7547 -0.0822 11 6 1.2957 -4.6111 1.1345 12 1 2.0010 -5.0742 1.8248 13 6 -0.1134 -5.1905 0.9943 14 1 -0.5443 -5.2254 -0.0063 15 6 -0.4937 -6.3508 1.9164 16 7 -0.7432 -7.5507 1.1138 17 6 -1.0959 -8.7033 1.7168 18 8 -1.2066 -8.7475 2.9278 19 6 -1.3454 -9.9060 0.9126 20 6 -1.2568 -10.0106 -0.4849 21 7 -1.5500 -11.2381 -0.8350 22 7 -1.8428 -11.9907 0.3051 23 6 -2.2003 -13.2923 0.4978 24 6 -2.4247 -13.7497 1.7512 25 7 -2.3030 -12.9513 2.8110 26 6 -1.9607 -11.6900 2.6743 27 6 -1.7182 -11.1723 1.3945 28 6 0.0732 -3.8134 1.6341 29 1 -0.1322 -3.6821 2.6965 30 6 -0.0302 -2.5691 0.7261 31 1 -0.4850 0.8402 0.0004 32 1 1.4040 -4.1203 -1.0218 33 1 2.9075 -3.7786 -0.1130 34 1 -1.3945 -6.0922 2.4730 35 1 0.3217 -6.5430 2.6136 36 1 -0.6553 -7.5156 0.1485 37 1 -0.9864 -9.2117 -1.1594 38 1 -2.3047 -13.9561 -0.3478 39 1 -2.7079 -14.7818 1.8954 40 1 -1.8659 -11.0559 3.5434 41 1 -0.7329 -2.7495 -0.0874 42 1 -0.3352 -1.6988 1.3072 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978280965.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:53 Heat of formation + Delta-G solvation = 125.498775 kcal Electronic energy + Delta-G solvation = -25943.024989 eV Core-core repulsion = 22119.385050 eV Total energy + Delta-G solvation = -3823.639939 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.144 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.60687 -40.74707 -39.99932 -39.25661 -36.29138 -34.99602 -34.70161 -32.71978 -32.45835 -30.73205 -28.84634 -28.54380 -26.73916 -25.91028 -24.65575 -23.66325 -22.74402 -21.82622 -21.07170 -20.79553 -19.56194 -18.79138 -18.47954 -17.99494 -17.27202 -17.05576 -16.77694 -16.32508 -16.12953 -16.09237 -15.86703 -15.21841 -15.00442 -14.58608 -14.50938 -14.38815 -14.17443 -14.03014 -13.97930 -13.31988 -13.15699 -12.85026 -12.68201 -12.42724 -12.28135 -12.01336 -11.92877 -11.85625 -11.72945 -11.16227 -11.09467 -11.00437 -10.89050 -10.66811 -10.51878 -10.02428 -9.00695 -8.88120 -7.90647 -5.26073 -0.73595 -0.31117 0.80949 0.95029 1.47018 1.48654 1.57978 2.11049 2.14146 2.47996 2.49032 2.79478 2.95892 3.11790 3.22768 3.28213 3.66117 3.66959 3.75056 3.82097 3.91292 4.01098 4.21431 4.28690 4.32261 4.33920 4.40023 4.49992 4.62583 4.73987 4.82344 4.96892 5.02547 5.05730 5.08247 5.26609 5.35195 5.38739 5.47080 5.51923 5.56969 5.69683 6.10138 6.20150 6.48779 6.61309 7.03035 7.26936 7.70636 8.48981 9.23172 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.040087 B = 0.001906 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.312480 B =14690.709500 C =15026.447675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.064 4.064 3 Si 0.979 3.021 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.269 1.269 7 C -0.239 4.239 8 H 0.080 0.920 9 N -0.621 5.621 10 C 0.149 3.851 11 C -0.158 4.158 12 H 0.129 0.871 13 C -0.111 4.111 14 H 0.112 0.888 15 C 0.166 3.834 16 N -0.708 5.708 17 C 0.597 3.403 18 O -0.585 6.585 19 C -0.298 4.298 20 C 0.128 3.872 21 N -0.323 5.323 22 N -0.253 5.253 23 C 0.069 3.931 24 C 0.030 3.970 25 N -0.452 5.452 26 C 0.145 3.855 27 C 0.083 3.917 28 C -0.179 4.179 29 H 0.111 0.889 30 C 0.189 3.811 31 H 0.249 0.751 32 H 0.033 0.967 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.414 0.586 37 H 0.238 0.762 38 H 0.221 0.779 39 H 0.229 0.771 40 H 0.188 0.812 41 H 0.003 0.997 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.820 -29.558 0.178 29.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.258 4.258 3 Si 0.806 3.194 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.194 1.194 7 C -0.368 4.368 8 H 0.098 0.902 9 N -0.345 5.345 10 C 0.023 3.977 11 C -0.178 4.178 12 H 0.146 0.854 13 C -0.130 4.130 14 H 0.130 0.870 15 C 0.043 3.957 16 N -0.359 5.359 17 C 0.386 3.614 18 O -0.467 6.467 19 C -0.316 4.316 20 C -0.050 4.050 21 N -0.146 5.146 22 N -0.019 5.019 23 C -0.060 4.060 24 C -0.112 4.112 25 N -0.163 5.163 26 C -0.032 4.032 27 C -0.040 4.040 28 C -0.200 4.200 29 H 0.129 0.871 30 C 0.064 3.936 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.251 0.749 37 H 0.254 0.746 38 H 0.238 0.762 39 H 0.245 0.755 40 H 0.205 0.795 41 H 0.021 0.979 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.185 -30.551 0.628 30.994 hybrid contribution 0.498 2.285 -0.633 2.423 sum -4.687 -28.266 -0.005 28.652 Atomic orbital electron populations 1.70096 1.06477 1.25675 1.57209 1.25728 0.96503 1.01261 1.02271 0.85089 0.77719 0.78980 0.77568 1.21058 1.22005 1.19432 1.19359 0.91364 0.83735 1.42357 0.90242 1.45467 1.14301 1.01241 1.73529 1.21887 0.97600 0.84118 0.94059 1.24642 0.90440 1.01767 1.00924 0.85356 1.22440 0.98090 0.92111 1.00341 0.87014 1.20671 1.01011 0.81785 0.92251 1.45555 1.69893 1.08926 1.11535 1.17019 0.75806 0.82264 0.86326 1.90759 1.54961 1.85657 1.15298 1.19688 1.24287 0.93646 0.93984 1.24779 0.91479 0.94833 0.93949 1.77688 1.28604 1.05245 1.03082 1.46544 1.40129 1.09195 1.06067 1.23499 0.97887 0.81733 1.02881 1.23234 1.00063 1.02822 0.85086 1.68285 1.09369 1.03932 1.34754 1.23250 0.93631 0.91912 0.94422 1.20536 1.00688 0.92247 0.90575 1.23858 1.04935 0.91310 0.99860 0.87144 1.20806 0.86029 0.93706 0.93098 0.94171 0.94896 0.92813 0.91259 0.91258 0.74876 0.74580 0.76232 0.75467 0.79476 0.97861 0.93188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.78 10.88 21.65 0.24 -56.54 16 2 C -0.06 -3.63 5.39 84.86 0.46 -3.17 16 3 Si 0.98 45.43 29.56 68.60 2.03 47.45 16 4 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.24 -13.36 10.35 84.03 0.87 -12.49 16 8 H 0.08 4.24 7.85 -2.91 -0.02 4.22 16 9 N -0.62 -31.66 3.38 -681.44 -2.30 -33.97 16 10 C 0.15 5.86 7.10 87.72 0.62 6.48 16 11 C -0.16 -5.01 7.03 -8.70 -0.06 -5.07 16 12 H 0.13 3.60 8.12 -2.38 -0.02 3.58 16 13 C -0.11 -2.98 5.34 -10.79 -0.06 -3.03 16 14 H 0.11 2.89 8.04 -2.39 -0.02 2.87 16 15 C 0.17 3.90 5.95 86.38 0.51 4.42 16 16 N -0.71 -13.98 5.55 -466.94 -2.59 -16.57 16 17 C 0.60 14.14 7.79 86.49 0.67 14.81 16 18 O -0.59 -17.79 15.81 -4.30 -0.07 -17.86 16 19 C -0.30 -6.04 6.16 -19.95 -0.12 -6.16 16 20 C 0.13 1.98 11.44 85.35 0.98 2.96 16 21 N -0.32 -5.79 12.60 -56.59 -0.71 -6.51 16 22 N -0.25 -4.28 3.91 -187.14 -0.73 -5.01 16 23 C 0.07 0.62 11.24 83.31 0.94 1.56 16 24 C 0.03 0.26 11.07 83.80 0.93 1.19 16 25 N -0.45 -7.26 10.44 -195.86 -2.05 -9.31 16 26 C 0.15 2.80 10.98 85.22 0.94 3.74 16 27 C 0.08 1.68 6.77 39.39 0.27 1.95 16 28 C -0.18 -6.44 6.77 -9.89 -0.07 -6.51 16 29 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 30 C 0.19 9.13 5.70 86.53 0.49 9.62 16 31 H 0.25 14.49 8.31 -92.70 -0.77 13.72 16 32 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.07 1.69 7.94 -2.39 -0.02 1.68 16 36 H 0.41 5.73 7.32 -92.71 -0.68 5.05 16 37 H 0.24 1.66 7.46 -2.91 -0.02 1.64 16 38 H 0.22 0.16 8.06 -2.91 -0.02 0.13 16 39 H 0.23 -0.14 8.06 -2.91 -0.02 -0.17 16 40 H 0.19 3.78 7.20 -2.91 -0.02 3.76 16 41 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 42 H 0.05 2.77 6.53 -2.39 -0.02 2.76 16 Total: -1.00 -77.83 358.13 1.57 -76.26 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.39 Total: 11.76 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 7.37 Total: 10.29 kcal Atomic # 7 Polarization: -119.76 SS G_CDS: -8.15 Total: -127.91 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.07 Total: -17.86 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -77.83 1.57 -76.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978280965.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.759 kcal (2) G-P(sol) polarization free energy of solvation -77.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds