Wall clock time and date at job start Fri Apr 10 2020 18:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00202 * 2 1 4 4 H 1.48503 * 109.46969 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47087 * 299.99625 * 3 2 1 6 6 H 1.48501 * 109.47100 * 59.99975 * 3 2 1 7 7 C 1.38810 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00447 * 189.10469 * 7 2 1 9 9 N 1.36942 * 120.00144 * 9.10557 * 7 2 1 10 10 C 1.48145 * 127.83571 * 15.58770 * 9 7 2 11 11 C 1.54390 * 104.61604 * 140.39721 * 10 9 7 12 12 H 1.09008 * 118.18154 * 244.20316 * 11 10 9 13 13 C 1.52996 * 118.12381 * 87.19422 * 11 10 9 14 14 H 1.09001 * 117.43980 * 16.10806 * 13 11 10 15 15 C 1.53003 * 117.44477 * 160.85255 * 13 11 10 16 16 N 1.46494 * 109.47117 * 185.00069 * 15 13 11 17 17 C 1.34779 * 120.00082 * 180.02562 * 16 15 13 18 18 O 1.21708 * 119.99610 * 359.97438 * 17 16 15 19 19 C 1.46664 * 120.00236 * 179.97438 * 17 16 15 20 20 C 1.40334 * 126.56354 * 0.02769 * 19 17 16 21 21 N 1.31001 * 108.78376 * 179.97438 * 20 19 17 22 22 N 1.39903 * 109.55847 * 0.02562 * 21 20 19 23 23 N 1.40018 * 132.51774 * 179.97438 * 22 21 20 24 24 C 1.30833 * 120.65735 * 179.97438 * 23 22 21 25 25 C 1.39734 * 120.97410 * 0.02562 * 24 23 22 26 26 C 1.36562 * 119.94538 * 359.97438 * 25 24 23 27 27 C 1.36756 * 107.87095 * 359.72637 * 22 21 20 28 28 C 1.52995 * 60.55572 * 268.45547 * 13 11 10 29 29 H 1.09002 * 119.54474 * 248.23101 * 28 13 11 30 30 C 1.48140 * 127.84195 * 195.56771 * 9 7 2 31 31 H 0.96999 * 119.99692 * 0.02562 * 1 2 3 32 32 H 1.09001 * 110.40715 * 21.61523 * 10 9 7 33 33 H 1.08997 * 110.41237 * 259.18590 * 10 9 7 34 34 H 1.09005 * 109.47056 * 305.00186 * 15 13 11 35 35 H 1.09003 * 109.46860 * 64.99921 * 15 13 11 36 36 H 0.96999 * 120.00164 * 359.97438 * 16 15 13 37 37 H 1.08006 * 125.60752 * 0.03441 * 20 19 17 38 38 H 1.07997 * 119.51836 * 180.02562 * 24 23 22 39 39 H 1.07998 * 120.03336 * 179.97438 * 25 24 23 40 40 H 1.07998 * 120.45217 * 180.02562 * 26 25 24 41 41 H 1.09000 * 110.40859 * 100.81619 * 30 9 7 42 42 H 1.08996 * 110.50838 * 338.44038 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0800 -1.2081 0.1485 9 7 1.3385 -2.3807 -0.1866 10 6 -0.0341 -2.5710 -0.7107 11 6 0.0643 -3.8171 -1.6169 12 1 -0.1224 -3.6938 -2.6838 13 6 -0.1181 -5.1931 -0.9733 14 1 -0.5683 -5.2279 0.0188 15 6 -0.4659 -6.3628 -1.8963 16 7 -0.7165 -7.5615 -1.0922 17 6 -1.0420 -8.7218 -1.6957 18 8 -1.1283 -8.7736 -2.9086 19 6 -1.2924 -9.9220 -0.8908 20 6 -1.2323 -10.0181 0.5079 21 7 -1.5177 -11.2475 0.8590 22 7 -1.7765 -12.0126 -0.2833 23 7 -2.1219 -13.3576 -0.4631 24 6 -2.3148 -13.8421 -1.6630 25 6 -2.1815 -13.0338 -2.7950 26 6 -1.8457 -11.7174 -2.6569 27 6 -1.6447 -11.1973 -1.3733 28 6 1.2863 -4.5975 -1.0899 29 1 2.0101 -5.0555 -1.7640 30 6 1.8194 -3.7546 0.0886 31 1 -0.4849 0.8401 -0.0004 32 1 -0.3430 -1.7020 -1.2916 33 1 -0.7319 -2.7500 0.1073 34 1 -1.3585 -6.1183 -2.4721 35 1 0.3655 -6.5486 -2.5763 36 1 -0.6474 -7.5203 -0.1256 37 1 -0.9914 -9.2109 1.1839 38 1 -2.5811 -14.8822 -1.7804 39 1 -2.3439 -13.4498 -3.7784 40 1 -1.7409 -11.0851 -3.5262 41 1 1.4112 -4.1184 1.0315 42 1 2.9088 -3.7802 0.1121 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978289853.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:57 Heat of formation + Delta-G solvation = 169.101129 kcal Electronic energy + Delta-G solvation = -25914.119183 eV Core-core repulsion = 22092.369984 eV Total energy + Delta-G solvation = -3821.749199 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.144 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -42.28816 -39.63405 -38.71756 -38.20062 -35.00200 -33.67572 -33.36574 -31.68730 -30.94835 -29.99532 -27.33976 -27.10288 -25.27043 -25.06217 -23.61716 -22.73471 -21.15425 -20.63278 -19.78786 -19.26097 -18.55171 -17.90385 -17.15690 -16.80482 -16.39635 -16.34264 -15.77323 -15.12630 -14.85137 -14.63585 -14.37918 -13.95007 -13.87745 -13.61284 -13.20608 -13.06724 -12.94261 -12.73337 -12.64536 -11.90721 -11.83685 -11.32512 -11.26920 -11.10207 -10.94220 -10.85010 -10.65357 -10.31412 -10.17008 -10.11499 -10.10449 -9.75044 -9.42871 -9.14682 -8.99528 -8.65940 -8.55369 -6.87287 -5.80741 -3.14904 -0.27015 0.49297 0.91218 1.71854 2.49217 3.06920 3.26344 3.37316 3.43463 3.45874 3.68935 3.86071 4.01431 4.05628 4.15409 4.39644 4.45838 4.63094 4.75057 4.87688 4.95782 5.29023 5.32816 5.38200 5.41208 5.45685 5.50675 5.56005 5.75072 5.81219 5.89762 5.92394 5.97528 6.22411 6.34963 6.55762 6.66191 6.70572 6.81826 6.91542 6.91998 7.35220 7.45514 7.52910 7.71470 8.14270 8.20313 9.10416 9.73171 10.50095 11.33643 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.040236 B = 0.001900 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.725442 B =14732.887202 C =15065.679328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.595 5.595 10 C 0.183 3.817 11 C -0.161 4.161 12 H 0.103 0.897 13 C -0.150 4.150 14 H 0.103 0.897 15 C 0.157 3.843 16 N -0.717 5.717 17 C 0.596 3.404 18 O -0.552 6.552 19 C -0.267 4.267 20 C 0.098 3.902 21 N -0.252 5.252 22 N -0.173 5.173 23 N -0.216 5.216 24 C 0.118 3.882 25 C -0.159 4.159 26 C -0.025 4.025 27 C 0.106 3.894 28 C -0.171 4.171 29 H 0.103 0.897 30 C 0.154 3.846 31 H 0.254 0.746 32 H 0.090 0.910 33 H 0.024 0.976 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.401 0.599 37 H 0.210 0.790 38 H 0.208 0.792 39 H 0.161 0.839 40 H 0.172 0.828 41 H 0.024 0.976 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.521 -27.209 -5.177 28.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.318 5.318 10 C 0.058 3.942 11 C -0.182 4.182 12 H 0.121 0.879 13 C -0.169 4.169 14 H 0.121 0.879 15 C 0.034 3.966 16 N -0.367 5.367 17 C 0.383 3.617 18 O -0.432 6.432 19 C -0.283 4.283 20 C -0.083 4.083 21 N -0.076 5.076 22 N -0.040 5.040 23 N -0.028 5.028 24 C -0.074 4.074 25 C -0.184 4.184 26 C -0.052 4.052 27 C -0.020 4.020 28 C -0.191 4.191 29 H 0.121 0.879 30 C 0.027 3.973 31 H 0.064 0.936 32 H 0.108 0.892 33 H 0.042 0.958 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.235 0.765 37 H 0.226 0.774 38 H 0.224 0.776 39 H 0.179 0.821 40 H 0.189 0.811 41 H 0.042 0.958 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.723 -28.030 -3.927 28.876 hybrid contribution 0.557 1.668 -0.980 2.013 sum -5.166 -26.362 -4.907 27.308 Atomic orbital electron populations 1.69907 1.05052 1.25308 1.55909 1.24900 0.95657 0.97989 1.01815 0.86044 0.78882 0.83535 0.77276 1.20369 1.21611 1.21704 1.19044 0.90837 0.82366 1.43179 0.90535 1.45215 1.13363 1.00010 1.73230 1.21066 0.86826 0.92751 0.93578 1.24233 1.02144 0.91695 1.00097 0.87867 1.22533 1.00338 0.93773 1.00298 0.87861 1.20883 1.01192 0.81860 0.92639 1.45757 1.70755 1.09407 1.10802 1.16827 0.76404 0.81781 0.86691 1.90768 1.53386 1.85332 1.13672 1.19850 1.21192 0.93879 0.93420 1.24374 0.94961 0.94638 0.94368 1.77737 1.25063 1.02979 1.01851 1.50978 1.43378 1.04760 1.04865 1.75899 1.14640 0.88942 1.23349 1.24338 0.93336 1.01916 0.87858 1.21771 1.01651 0.93957 1.01062 1.21231 0.92355 0.95649 0.95992 1.19775 1.00330 0.91954 0.89959 1.23996 0.89825 1.02610 1.02690 0.87907 1.21137 0.97148 0.86004 0.92971 0.93607 0.89191 0.95848 0.90955 0.91279 0.76463 0.77379 0.77554 0.82112 0.81073 0.95830 0.93212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.61 10.87 55.49 0.60 -26.01 16 2 C -0.01 -0.18 5.40 -17.43 -0.09 -0.28 16 3 Si 0.91 21.83 29.56 -169.99 -5.03 16.80 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.23 -6.25 10.35 -15.06 -0.16 -6.41 16 8 H 0.08 2.05 7.85 -52.49 -0.41 1.64 16 9 N -0.59 -15.04 3.38 -168.86 -0.57 -15.61 16 10 C 0.18 4.32 5.70 -2.41 -0.01 4.30 16 11 C -0.16 -2.95 6.85 -89.22 -0.61 -3.56 16 12 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 13 C -0.15 -2.19 5.39 -90.62 -0.49 -2.68 16 14 H 0.10 1.48 8.04 -51.93 -0.42 1.06 16 15 C 0.16 2.02 5.95 -4.04 -0.02 2.00 16 16 N -0.72 -8.00 5.55 -61.62 -0.34 -8.34 16 17 C 0.60 7.52 7.79 -12.86 -0.10 7.42 16 18 O -0.55 -8.45 15.77 5.18 0.08 -8.36 16 19 C -0.27 -3.02 6.16 -104.73 -0.65 -3.67 16 20 C 0.10 0.96 11.44 -17.12 -0.20 0.77 16 21 N -0.25 -3.08 12.61 30.75 0.39 -2.70 16 22 N -0.17 -2.05 5.25 32.44 0.17 -1.88 16 23 N -0.22 -2.07 11.96 30.59 0.37 -1.71 16 24 C 0.12 0.57 11.28 -17.42 -0.20 0.37 16 25 C -0.16 -0.72 10.04 -39.63 -0.40 -1.11 16 26 C -0.02 -0.20 9.75 -39.55 -0.39 -0.58 16 27 C 0.11 1.18 6.83 -84.05 -0.57 0.60 16 28 C -0.17 -2.92 6.74 -89.22 -0.60 -3.52 16 29 H 0.10 1.63 8.12 -51.93 -0.42 1.20 16 30 C 0.15 3.13 7.04 -2.41 -0.02 3.12 16 31 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.09 2.38 6.51 -51.93 -0.34 2.05 16 33 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.93 7.93 -51.93 -0.41 0.52 16 36 H 0.40 3.47 7.32 -40.82 -0.30 3.17 16 37 H 0.21 1.21 7.46 -52.48 -0.39 0.82 16 38 H 0.21 -0.02 8.06 -52.49 -0.42 -0.45 16 39 H 0.16 0.11 8.06 -52.49 -0.42 -0.32 16 40 H 0.17 1.34 7.18 -52.49 -0.38 0.96 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 358.53 15.07 5.40 5.40 Total: -1.00 -36.12 358.53 -8.59 -44.71 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -5.16 Total: 0.94 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -4.50 Total: -3.25 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 0.61 Total: -56.25 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.08 Total: -8.36 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -36.12 -8.59 -44.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978289853.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.816 kcal (2) G-P(sol) polarization free energy of solvation -36.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 177.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 169.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds