Wall clock time and date at job start Fri Apr 10 2020 18:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00202 * 2 1 4 4 H 1.48503 * 109.46969 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47087 * 299.99625 * 3 2 1 6 6 H 1.48501 * 109.47100 * 59.99975 * 3 2 1 7 7 C 1.38810 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00447 * 189.10469 * 7 2 1 9 9 N 1.36942 * 120.00144 * 9.10557 * 7 2 1 10 10 C 1.48145 * 127.83571 * 15.58770 * 9 7 2 11 11 C 1.54390 * 104.61604 * 140.39721 * 10 9 7 12 12 H 1.09008 * 118.18154 * 244.20316 * 11 10 9 13 13 C 1.52996 * 118.12381 * 87.19422 * 11 10 9 14 14 H 1.09001 * 117.43980 * 16.10806 * 13 11 10 15 15 C 1.53003 * 117.44477 * 160.85255 * 13 11 10 16 16 N 1.46494 * 109.47117 * 185.00069 * 15 13 11 17 17 C 1.34779 * 120.00082 * 180.02562 * 16 15 13 18 18 O 1.21708 * 119.99610 * 359.97438 * 17 16 15 19 19 C 1.46664 * 120.00236 * 179.97438 * 17 16 15 20 20 C 1.40334 * 126.56354 * 0.02769 * 19 17 16 21 21 N 1.31001 * 108.78376 * 179.97438 * 20 19 17 22 22 N 1.39903 * 109.55847 * 0.02562 * 21 20 19 23 23 N 1.40018 * 132.51774 * 179.97438 * 22 21 20 24 24 C 1.30833 * 120.65735 * 179.97438 * 23 22 21 25 25 C 1.39734 * 120.97410 * 0.02562 * 24 23 22 26 26 C 1.36562 * 119.94538 * 359.97438 * 25 24 23 27 27 C 1.36756 * 107.87095 * 359.72637 * 22 21 20 28 28 C 1.52995 * 60.55572 * 268.45547 * 13 11 10 29 29 H 1.09002 * 119.54474 * 248.23101 * 28 13 11 30 30 C 1.48140 * 127.84195 * 195.56771 * 9 7 2 31 31 H 0.96999 * 119.99692 * 0.02562 * 1 2 3 32 32 H 1.09001 * 110.40715 * 21.61523 * 10 9 7 33 33 H 1.08997 * 110.41237 * 259.18590 * 10 9 7 34 34 H 1.09005 * 109.47056 * 305.00186 * 15 13 11 35 35 H 1.09003 * 109.46860 * 64.99921 * 15 13 11 36 36 H 0.96999 * 120.00164 * 359.97438 * 16 15 13 37 37 H 1.08006 * 125.60752 * 0.03441 * 20 19 17 38 38 H 1.07997 * 119.51836 * 180.02562 * 24 23 22 39 39 H 1.07998 * 120.03336 * 179.97438 * 25 24 23 40 40 H 1.07998 * 120.45217 * 180.02562 * 26 25 24 41 41 H 1.09000 * 110.40859 * 100.81619 * 30 9 7 42 42 H 1.08996 * 110.50838 * 338.44038 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0800 -1.2081 0.1485 9 7 1.3385 -2.3807 -0.1866 10 6 -0.0341 -2.5710 -0.7107 11 6 0.0643 -3.8171 -1.6169 12 1 -0.1224 -3.6938 -2.6838 13 6 -0.1181 -5.1931 -0.9733 14 1 -0.5683 -5.2279 0.0188 15 6 -0.4659 -6.3628 -1.8963 16 7 -0.7165 -7.5615 -1.0922 17 6 -1.0420 -8.7218 -1.6957 18 8 -1.1283 -8.7736 -2.9086 19 6 -1.2924 -9.9220 -0.8908 20 6 -1.2323 -10.0181 0.5079 21 7 -1.5177 -11.2475 0.8590 22 7 -1.7765 -12.0126 -0.2833 23 7 -2.1219 -13.3576 -0.4631 24 6 -2.3148 -13.8421 -1.6630 25 6 -2.1815 -13.0338 -2.7950 26 6 -1.8457 -11.7174 -2.6569 27 6 -1.6447 -11.1973 -1.3733 28 6 1.2863 -4.5975 -1.0899 29 1 2.0101 -5.0555 -1.7640 30 6 1.8194 -3.7546 0.0886 31 1 -0.4849 0.8401 -0.0004 32 1 -0.3430 -1.7020 -1.2916 33 1 -0.7319 -2.7500 0.1073 34 1 -1.3585 -6.1183 -2.4721 35 1 0.3655 -6.5486 -2.5763 36 1 -0.6474 -7.5203 -0.1256 37 1 -0.9914 -9.2109 1.1839 38 1 -2.5811 -14.8822 -1.7804 39 1 -2.3439 -13.4498 -3.7784 40 1 -1.7409 -11.0851 -3.5262 41 1 1.4112 -4.1184 1.0315 42 1 2.9088 -3.7802 0.1121 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978289853.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:56 Heat of formation + Delta-G solvation = 143.387234 kcal Electronic energy + Delta-G solvation = -25915.234221 eV Core-core repulsion = 22092.369984 eV Total energy + Delta-G solvation = -3822.864237 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.144 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.96644 -40.76094 -40.00345 -38.86791 -36.31008 -34.97291 -34.27560 -32.80186 -32.24375 -30.87870 -28.89620 -28.65471 -26.67858 -25.81236 -24.43537 -23.54103 -22.76591 -21.79321 -20.94740 -20.77486 -19.30683 -18.81570 -18.49535 -17.86136 -17.07520 -17.06093 -16.87093 -16.52734 -16.10202 -15.94694 -15.31869 -15.19885 -15.00257 -14.59918 -14.42636 -14.38314 -14.12457 -13.60108 -13.59046 -13.32255 -13.17080 -12.87022 -12.72796 -12.61917 -12.26756 -11.95814 -11.93902 -11.89538 -11.75134 -11.53454 -11.14115 -10.89464 -10.85046 -10.67179 -10.52946 -10.06029 -9.28917 -8.88890 -7.91042 -5.26842 -0.83215 -0.06779 0.29964 0.95362 1.46794 1.47477 1.58346 1.94027 2.12753 2.41623 2.48294 2.77854 3.13772 3.27565 3.31167 3.43192 3.60363 3.65362 3.73960 3.85514 3.88823 4.06366 4.18784 4.28961 4.31931 4.33723 4.46736 4.60069 4.70248 4.78965 4.84934 4.91605 4.97378 5.05597 5.08844 5.16518 5.24967 5.38095 5.46530 5.49963 5.56423 5.68934 6.13756 6.19717 6.32366 6.58611 7.02628 7.23622 7.69833 8.48066 9.22863 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.040236 B = 0.001900 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.725442 B =14732.887202 C =15065.679328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.064 4.064 3 Si 0.979 3.021 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.080 0.920 9 N -0.621 5.621 10 C 0.189 3.811 11 C -0.176 4.176 12 H 0.114 0.886 13 C -0.108 4.108 14 H 0.111 0.889 15 C 0.167 3.833 16 N -0.708 5.708 17 C 0.600 3.400 18 O -0.584 6.584 19 C -0.298 4.298 20 C 0.109 3.891 21 N -0.295 5.295 22 N -0.190 5.190 23 N -0.258 5.258 24 C 0.134 3.866 25 C -0.119 4.119 26 C -0.063 4.063 27 C 0.101 3.899 28 C -0.161 4.161 29 H 0.124 0.876 30 C 0.148 3.852 31 H 0.249 0.751 32 H 0.051 0.949 33 H 0.003 0.997 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.414 0.586 37 H 0.240 0.760 38 H 0.262 0.738 39 H 0.210 0.790 40 H 0.169 0.831 41 H 0.029 0.971 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.254 -30.125 -6.249 31.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.258 4.258 3 Si 0.807 3.193 4 H -0.189 1.189 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.098 0.902 9 N -0.346 5.346 10 C 0.063 3.937 11 C -0.196 4.196 12 H 0.132 0.868 13 C -0.127 4.127 14 H 0.129 0.871 15 C 0.044 3.956 16 N -0.360 5.360 17 C 0.388 3.612 18 O -0.466 6.466 19 C -0.315 4.315 20 C -0.072 4.072 21 N -0.119 5.119 22 N -0.055 5.055 23 N -0.071 5.071 24 C -0.058 4.058 25 C -0.144 4.144 26 C -0.090 4.090 27 C -0.027 4.027 28 C -0.180 4.180 29 H 0.142 0.858 30 C 0.023 3.977 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.021 0.979 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.251 0.749 37 H 0.256 0.744 38 H 0.277 0.723 39 H 0.227 0.773 40 H 0.186 0.814 41 H 0.047 0.953 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.436 -30.983 -4.962 31.846 hybrid contribution 0.416 2.338 -0.717 2.480 sum -5.021 -28.645 -5.679 29.631 Atomic orbital electron populations 1.70098 1.06480 1.25614 1.57332 1.25734 0.96520 1.01267 1.02278 0.85009 0.78298 0.79254 0.76734 1.18917 1.21810 1.21858 1.19414 0.91326 0.83706 1.42283 0.90212 1.45542 1.13929 1.01242 1.73848 1.20799 0.85958 0.93757 0.93186 1.23915 1.04607 0.91284 0.99842 0.86837 1.22420 0.97900 0.91991 1.00412 0.87088 1.20672 1.01172 0.81608 0.92164 1.45582 1.70421 1.08549 1.11405 1.16948 0.75689 0.82188 0.86332 1.90740 1.55028 1.85852 1.15015 1.19779 1.23911 0.93800 0.93967 1.24843 0.93320 0.94675 0.94323 1.77607 1.26991 1.03955 1.03310 1.51131 1.43953 1.05652 1.04739 1.75933 1.16801 0.88209 1.26146 1.25385 0.90054 1.03863 0.86449 1.22377 0.96784 0.92121 1.03113 1.21405 0.95375 0.97522 0.94735 1.20227 0.99364 0.92029 0.91050 1.23921 0.90616 1.02243 1.01229 0.85816 1.21300 0.97661 0.84273 0.94489 0.94161 0.93004 0.97928 0.91074 0.91187 0.74911 0.74359 0.72256 0.77282 0.81362 0.95333 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.03 10.87 21.65 0.24 -56.79 16 2 C -0.06 -3.67 5.40 84.86 0.46 -3.21 16 3 Si 0.98 45.63 29.56 68.60 2.03 47.66 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 6 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 7 C -0.24 -13.39 10.35 84.03 0.87 -12.52 16 8 H 0.08 4.29 7.85 -2.91 -0.02 4.27 16 9 N -0.62 -31.91 3.38 -688.16 -2.33 -34.24 16 10 C 0.19 9.15 5.70 86.53 0.49 9.65 16 11 C -0.18 -6.36 6.85 -9.89 -0.07 -6.43 16 12 H 0.11 3.87 8.14 -2.38 -0.02 3.85 16 13 C -0.11 -2.96 5.39 -10.80 -0.06 -3.02 16 14 H 0.11 2.95 8.04 -2.39 -0.02 2.93 16 15 C 0.17 3.98 5.95 86.38 0.51 4.50 16 16 N -0.71 -14.69 5.55 -467.07 -2.59 -17.28 16 17 C 0.60 14.74 7.79 86.44 0.67 15.42 16 18 O -0.58 -17.69 15.77 -4.37 -0.07 -17.76 16 19 C -0.30 -6.70 6.16 -19.93 -0.12 -6.82 16 20 C 0.11 2.12 11.44 85.33 0.98 3.09 16 21 N -0.29 -7.26 12.61 -56.62 -0.71 -7.98 16 22 N -0.19 -4.44 5.25 -51.28 -0.27 -4.70 16 23 N -0.26 -4.55 11.96 -57.12 -0.68 -5.23 16 24 C 0.13 0.79 11.28 85.20 0.96 1.75 16 25 C -0.12 -0.61 10.04 22.24 0.22 -0.39 16 26 C -0.06 -0.92 9.75 22.29 0.22 -0.71 16 27 C 0.10 2.20 6.83 39.42 0.27 2.47 16 28 C -0.16 -5.19 6.74 -9.89 -0.07 -5.25 16 29 H 0.12 3.55 8.12 -2.39 -0.02 3.53 16 30 C 0.15 5.92 7.04 86.54 0.61 6.53 16 31 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 32 H 0.05 2.88 6.51 -2.39 -0.02 2.87 16 33 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 34 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 35 H 0.07 1.72 7.93 -2.39 -0.02 1.71 16 36 H 0.41 6.34 7.32 -92.71 -0.68 5.66 16 37 H 0.24 2.48 7.46 -2.91 -0.02 2.46 16 38 H 0.26 -1.56 8.06 -2.91 -0.02 -1.59 16 39 H 0.21 -0.99 8.06 -2.91 -0.02 -1.01 16 40 H 0.17 2.52 7.18 -2.91 -0.02 2.50 16 41 H 0.03 1.12 8.14 -2.39 -0.02 1.11 16 42 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -83.77 358.53 1.95 -81.82 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 0.39 Total: 9.44 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: 5.95 Total: 5.06 kcal Atomic # 7 Polarization: -119.88 SS G_CDS: -6.35 Total: -126.22 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.07 Total: -17.76 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -83.77 1.95 -81.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978289853.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 225.205 kcal (2) G-P(sol) polarization free energy of solvation -83.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds