Wall clock time and date at job start Fri Apr 10 2020 18:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 120.00142 * 2 1 4 4 H 1.48499 * 109.47385 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46869 * 300.00306 * 3 2 1 6 6 H 1.48507 * 109.46865 * 60.00047 * 3 2 1 7 7 C 1.38816 * 120.00462 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00383 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99397 * 359.97438 * 7 2 1 10 10 C 1.48147 * 127.83511 * 180.02562 * 9 7 2 11 11 C 1.54388 * 104.61527 * 140.41382 * 10 9 7 12 12 H 1.09002 * 118.18441 * 244.20311 * 11 10 9 13 13 C 1.53005 * 118.11953 * 87.19121 * 11 10 9 14 14 H 1.08996 * 117.43816 * 16.10919 * 13 11 10 15 15 C 1.53004 * 117.43751 * 160.80919 * 13 11 10 16 16 N 1.46506 * 109.46794 * 244.23808 * 15 13 11 17 17 C 1.34777 * 119.99772 * 180.02562 * 16 15 13 18 18 O 1.21451 * 120.00167 * 0.02562 * 17 16 15 19 19 C 1.48631 * 119.99816 * 180.02562 * 17 16 15 20 20 N 1.33515 * 120.60237 * 359.97438 * 19 17 16 21 21 C 1.30810 * 122.65585 * 179.97438 * 20 19 17 22 22 N 1.34060 * 123.37694 * 359.97438 * 21 20 19 23 23 H 0.97003 * 120.20755 * 180.02562 * 22 21 20 24 24 C 1.36861 * 119.57067 * 0.02562 * 22 21 20 25 25 N 1.31639 * 135.94817 * 179.97438 * 24 22 21 26 26 C 1.33531 * 110.82773 * 179.30118 * 25 24 22 27 27 C 1.36076 * 110.92871 * 0.63574 * 26 25 24 28 28 C 1.39535 * 120.60547 * 179.72203 * 19 17 16 29 29 C 1.53001 * 60.55669 * 268.45658 * 13 11 10 30 30 H 1.09002 * 119.53987 * 248.23147 * 29 13 11 31 31 C 1.51827 * 127.61291 * 0.33947 * 9 7 2 32 32 H 0.96998 * 120.00080 * 359.97438 * 1 2 3 33 33 H 1.09005 * 110.40757 * 21.63824 * 10 9 7 34 34 H 1.08991 * 110.40667 * 259.20123 * 10 9 7 35 35 H 1.08993 * 109.47496 * 4.23927 * 15 13 11 36 36 H 1.09001 * 109.46776 * 124.24645 * 15 13 11 37 37 H 0.97003 * 119.99800 * 0.02562 * 16 15 13 38 38 H 1.07998 * 118.31272 * 180.02562 * 21 20 19 39 39 H 1.07998 * 124.53556 * 180.12273 * 26 25 24 40 40 H 1.07997 * 126.72240 * 179.50972 * 27 26 25 41 41 H 1.08997 * 110.21952 * 101.72307 * 31 9 7 42 42 H 1.09001 * 112.25708 * 338.13628 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 1.8844 -3.7601 -0.0005 11 6 0.9652 -4.5552 0.9514 12 1 1.3970 -4.9564 1.8683 13 6 -0.2957 -5.1962 0.3680 14 1 -0.3530 -5.2957 -0.7159 15 6 -0.9476 -6.3254 1.1686 16 7 -0.8786 -7.5712 0.4008 17 6 -1.3942 -8.7069 0.9114 18 8 -1.9165 -8.6975 2.0078 19 6 -1.3237 -9.9710 0.1327 20 7 -0.7527 -9.9949 -1.0740 21 6 -0.6682 -11.0842 -1.7933 22 7 -1.1425 -12.2720 -1.3916 23 1 -1.0546 -13.0511 -1.9628 24 6 -1.7513 -12.3782 -0.1705 25 7 -2.3138 -13.3436 0.5255 26 6 -2.7505 -12.8882 1.7023 27 6 -2.4990 -11.5572 1.8321 28 6 -1.8482 -11.1553 0.6516 29 6 -0.3710 -3.7838 0.9514 30 1 -0.9345 -3.6104 1.8682 31 6 -0.1793 -2.5892 -0.0071 32 1 -0.4850 0.8400 0.0004 33 1 2.9073 -3.7538 0.3762 34 1 1.8506 -4.1842 -1.0040 35 1 -0.4205 -6.4517 2.1142 36 1 -1.9906 -6.0767 1.3644 37 1 -0.4617 -7.5786 -0.4751 38 1 -0.1912 -11.0237 -2.7604 39 1 -3.2451 -13.4933 2.4477 40 1 -2.7505 -10.9317 2.6758 41 1 -0.5204 -2.8478 -1.0095 42 1 -0.7143 -1.7149 0.3636 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978408392.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:12 Heat of formation + Delta-G solvation = 134.670894 kcal Electronic energy + Delta-G solvation = -26045.280454 eV Core-core repulsion = 22222.038247 eV Total energy + Delta-G solvation = -3823.242206 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.144 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.28181 -39.81020 -39.03761 -38.59055 -35.46824 -35.02090 -33.28077 -30.94452 -30.73910 -29.45872 -27.80027 -27.02664 -25.81980 -24.51932 -23.91411 -21.69668 -21.11911 -20.98768 -20.01567 -19.18826 -18.82864 -18.44275 -17.34483 -16.88672 -16.59969 -16.25413 -15.99132 -15.24150 -15.02453 -14.68047 -14.30193 -13.92933 -13.69405 -13.43297 -13.29557 -13.12208 -12.78595 -12.69598 -12.62746 -11.97735 -11.83848 -11.27003 -11.07566 -10.95669 -10.85809 -10.66836 -10.37136 -10.27118 -10.11428 -9.96908 -9.68894 -9.39045 -9.14979 -9.01811 -8.91493 -8.80291 -8.25094 -6.92918 -5.67345 -3.11486 -0.67568 0.96702 1.74589 2.31074 2.70434 3.04001 3.31030 3.31879 3.38313 3.43511 3.46157 3.72165 4.10123 4.17485 4.40120 4.45992 4.54398 4.88642 4.95416 5.13586 5.28828 5.37986 5.45285 5.52200 5.62795 5.74578 5.86865 5.89669 5.91143 5.95122 6.02351 6.19624 6.27322 6.28620 6.55135 6.63589 6.63647 6.72063 6.91764 6.96049 7.31444 7.38109 7.53880 7.55529 7.79350 7.94687 8.27579 9.11522 9.75780 10.46993 11.36007 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.035304 B = 0.001990 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.924299 B =14065.792721 C =14535.952794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.015 4.015 3 Si 0.917 3.083 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.214 4.214 8 H 0.080 0.920 9 N -0.603 5.603 10 C 0.159 3.841 11 C -0.171 4.171 12 H 0.103 0.897 13 C -0.155 4.155 14 H 0.103 0.897 15 C 0.152 3.848 16 N -0.698 5.698 17 C 0.562 3.438 18 O -0.515 6.515 19 C 0.198 3.802 20 N -0.516 5.516 21 C 0.353 3.647 22 N -0.519 5.519 23 H 0.429 0.571 24 C 0.253 3.747 25 N -0.518 5.518 26 C 0.062 3.938 27 C -0.195 4.195 28 C -0.152 4.152 29 C -0.153 4.153 30 H 0.103 0.897 31 C 0.154 3.846 32 H 0.253 0.747 33 H 0.049 0.951 34 H 0.024 0.976 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.412 0.588 38 H 0.223 0.777 39 H 0.168 0.832 40 H 0.154 0.846 41 H 0.015 0.985 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.721 -25.168 -4.453 25.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.210 4.210 3 Si 0.748 3.252 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.342 4.342 8 H 0.097 0.903 9 N -0.327 5.327 10 C 0.032 3.968 11 C -0.191 4.191 12 H 0.121 0.879 13 C -0.174 4.174 14 H 0.121 0.879 15 C 0.029 3.971 16 N -0.349 5.349 17 C 0.345 3.655 18 O -0.389 6.389 19 C 0.063 3.937 20 N -0.237 5.237 21 C 0.069 3.931 22 N -0.122 5.122 23 H 0.268 0.732 24 C -0.001 4.001 25 N -0.238 5.238 26 C -0.080 4.080 27 C -0.219 4.219 28 C -0.165 4.165 29 C -0.173 4.173 30 H 0.121 0.879 31 C 0.030 3.970 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.041 0.959 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.249 0.751 38 H 0.239 0.761 39 H 0.185 0.815 40 H 0.172 0.828 41 H 0.033 0.967 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.919 -25.041 -4.096 25.541 hybrid contribution 0.469 0.409 -0.137 0.638 sum -2.449 -24.632 -4.233 25.113 Atomic orbital electron populations 1.69496 1.04955 1.24643 1.58073 1.24760 0.95706 0.97705 1.02844 0.85953 0.78573 0.83446 0.77255 1.20557 1.21767 1.21746 1.19160 0.90398 0.82241 1.42400 0.90257 1.46172 1.01371 0.99399 1.85773 1.21097 0.94914 0.85974 0.94802 1.24009 0.90674 1.02735 1.01704 0.87949 1.22564 1.01863 0.93851 0.99118 0.87889 1.21011 1.01184 0.80857 0.94022 1.45931 1.58376 1.08133 1.22472 1.17782 0.79785 0.82507 0.85409 1.90798 1.43664 1.84949 1.19537 1.21306 0.89632 0.93426 0.89329 1.67856 1.22230 1.26091 1.07522 1.24824 0.90874 0.78487 0.98868 1.41834 1.42719 1.13113 1.14570 0.73218 1.20561 0.99365 0.93152 0.87044 1.69547 1.17927 1.30128 1.06242 1.22711 0.98603 0.93545 0.93167 1.21628 1.05395 0.96498 0.98332 1.20874 1.05315 0.92025 0.98251 1.24186 0.99833 0.90860 1.02468 0.87924 1.22563 0.85352 0.95508 0.93581 0.93633 0.93233 0.95865 0.91006 0.90661 0.75127 0.76113 0.81457 0.82810 0.96666 0.84734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.46 10.12 55.49 0.56 -25.90 16 2 C -0.02 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.92 21.83 29.55 -169.99 -5.02 16.80 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 7 C -0.21 -5.88 10.42 -15.05 -0.16 -6.04 16 8 H 0.08 2.11 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -15.23 3.46 -165.72 -0.57 -15.81 16 10 C 0.16 3.23 7.05 -2.41 -0.02 3.21 16 11 C -0.17 -2.99 6.74 -89.22 -0.60 -3.59 16 12 H 0.10 1.67 8.12 -51.93 -0.42 1.25 16 13 C -0.15 -2.32 5.38 -90.61 -0.49 -2.81 16 14 H 0.10 1.51 8.04 -51.93 -0.42 1.10 16 15 C 0.15 2.03 5.95 -4.04 -0.02 2.00 16 16 N -0.70 -8.35 5.55 -60.99 -0.34 -8.69 16 17 C 0.56 7.49 7.84 -11.97 -0.09 7.40 16 18 O -0.51 -8.31 15.42 5.41 0.08 -8.22 16 19 C 0.20 2.25 6.83 -82.36 -0.56 1.69 16 20 N -0.52 -4.14 9.58 -10.67 -0.10 -4.24 16 21 C 0.35 1.33 12.24 -91.00 -1.11 0.22 16 22 N -0.52 -2.44 5.32 -12.02 -0.06 -2.51 16 23 H 0.43 0.38 8.93 -40.82 -0.36 0.02 16 24 C 0.25 2.58 8.71 -154.20 -1.34 1.23 16 25 N -0.52 -6.13 11.16 -10.91 -0.12 -6.25 16 26 C 0.06 0.70 11.70 -17.59 -0.21 0.49 16 27 C -0.19 -2.43 10.25 -39.44 -0.40 -2.83 16 28 C -0.15 -1.85 6.19 -104.65 -0.65 -2.50 16 29 C -0.15 -2.88 6.76 -89.23 -0.60 -3.48 16 30 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 31 C 0.15 3.63 6.43 -0.31 0.00 3.63 16 32 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 1.00 7.94 -51.93 -0.41 0.58 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.41 4.25 7.80 -40.82 -0.32 3.93 16 38 H 0.22 -0.44 8.06 -52.49 -0.42 -0.86 16 39 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.15 1.94 7.38 -52.49 -0.39 1.56 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.14 3.59 5.34 -51.93 -0.28 3.31 16 LS Contribution 355.98 15.07 5.36 5.36 Total: -1.00 -36.05 355.98 -11.68 -47.73 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -5.10 Total: 3.61 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -6.36 Total: -1.90 kcal Atomic # 7 Polarization: -62.75 SS G_CDS: -0.64 Total: -63.39 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: 0.08 Total: -8.22 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.05 -11.68 -47.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978408392.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.403 kcal (2) G-P(sol) polarization free energy of solvation -36.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds