Wall clock time and date at job start Fri Apr 10 2020 18:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 120.00142 * 2 1 4 4 H 1.48499 * 109.47385 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46869 * 300.00306 * 3 2 1 6 6 H 1.48507 * 109.46865 * 60.00047 * 3 2 1 7 7 C 1.38816 * 120.00462 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00383 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99397 * 359.97438 * 7 2 1 10 10 C 1.48147 * 127.83511 * 180.02562 * 9 7 2 11 11 C 1.54388 * 104.61527 * 140.41382 * 10 9 7 12 12 H 1.09002 * 118.18441 * 244.20311 * 11 10 9 13 13 C 1.53005 * 118.11953 * 87.19121 * 11 10 9 14 14 H 1.08996 * 117.43816 * 16.10919 * 13 11 10 15 15 C 1.53004 * 117.43751 * 160.80919 * 13 11 10 16 16 N 1.46506 * 109.46794 * 244.23808 * 15 13 11 17 17 C 1.34777 * 119.99772 * 180.02562 * 16 15 13 18 18 O 1.21451 * 120.00167 * 0.02562 * 17 16 15 19 19 C 1.48631 * 119.99816 * 180.02562 * 17 16 15 20 20 N 1.33515 * 120.60237 * 359.97438 * 19 17 16 21 21 C 1.30810 * 122.65585 * 179.97438 * 20 19 17 22 22 N 1.34060 * 123.37694 * 359.97438 * 21 20 19 23 23 H 0.97003 * 120.20755 * 180.02562 * 22 21 20 24 24 C 1.36861 * 119.57067 * 0.02562 * 22 21 20 25 25 N 1.31639 * 135.94817 * 179.97438 * 24 22 21 26 26 C 1.33531 * 110.82773 * 179.30118 * 25 24 22 27 27 C 1.36076 * 110.92871 * 0.63574 * 26 25 24 28 28 C 1.39535 * 120.60547 * 179.72203 * 19 17 16 29 29 C 1.53001 * 60.55669 * 268.45658 * 13 11 10 30 30 H 1.09002 * 119.53987 * 248.23147 * 29 13 11 31 31 C 1.51827 * 127.61291 * 0.33947 * 9 7 2 32 32 H 0.96998 * 120.00080 * 359.97438 * 1 2 3 33 33 H 1.09005 * 110.40757 * 21.63824 * 10 9 7 34 34 H 1.08991 * 110.40667 * 259.20123 * 10 9 7 35 35 H 1.08993 * 109.47496 * 4.23927 * 15 13 11 36 36 H 1.09001 * 109.46776 * 124.24645 * 15 13 11 37 37 H 0.97003 * 119.99800 * 0.02562 * 16 15 13 38 38 H 1.07998 * 118.31272 * 180.02562 * 21 20 19 39 39 H 1.07998 * 124.53556 * 180.12273 * 26 25 24 40 40 H 1.07997 * 126.72240 * 179.50972 * 27 26 25 41 41 H 1.08997 * 110.21952 * 101.72307 * 31 9 7 42 42 H 1.09001 * 112.25708 * 338.13628 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 1.8844 -3.7601 -0.0005 11 6 0.9652 -4.5552 0.9514 12 1 1.3970 -4.9564 1.8683 13 6 -0.2957 -5.1962 0.3680 14 1 -0.3530 -5.2957 -0.7159 15 6 -0.9476 -6.3254 1.1686 16 7 -0.8786 -7.5712 0.4008 17 6 -1.3942 -8.7069 0.9114 18 8 -1.9165 -8.6975 2.0078 19 6 -1.3237 -9.9710 0.1327 20 7 -0.7527 -9.9949 -1.0740 21 6 -0.6682 -11.0842 -1.7933 22 7 -1.1425 -12.2720 -1.3916 23 1 -1.0546 -13.0511 -1.9628 24 6 -1.7513 -12.3782 -0.1705 25 7 -2.3138 -13.3436 0.5255 26 6 -2.7505 -12.8882 1.7023 27 6 -2.4990 -11.5572 1.8321 28 6 -1.8482 -11.1553 0.6516 29 6 -0.3710 -3.7838 0.9514 30 1 -0.9345 -3.6104 1.8682 31 6 -0.1793 -2.5892 -0.0071 32 1 -0.4850 0.8400 0.0004 33 1 2.9073 -3.7538 0.3762 34 1 1.8506 -4.1842 -1.0040 35 1 -0.4205 -6.4517 2.1142 36 1 -1.9906 -6.0767 1.3644 37 1 -0.4617 -7.5786 -0.4751 38 1 -0.1912 -11.0237 -2.7604 39 1 -3.2451 -13.4933 2.4477 40 1 -2.7505 -10.9317 2.6758 41 1 -0.5204 -2.8478 -1.0095 42 1 -0.7143 -1.7149 0.3636 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978408392.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:11 Heat of formation + Delta-G solvation = 110.389579 kcal Electronic energy + Delta-G solvation = -26046.333370 eV Core-core repulsion = 22222.038247 eV Total energy + Delta-G solvation = -3824.295123 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.144 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.95225 -40.90519 -40.05840 -39.67442 -36.34886 -36.11998 -34.95834 -32.61127 -31.58747 -30.24835 -29.15619 -28.70798 -27.19440 -25.74436 -24.52426 -22.95113 -22.37310 -21.94582 -21.29040 -20.73480 -19.56103 -19.24600 -18.84590 -18.06448 -17.37141 -17.06100 -16.98379 -16.74852 -16.18787 -15.99826 -15.45849 -15.19547 -14.92830 -14.59841 -14.44541 -14.21948 -14.13759 -13.95860 -13.52163 -13.36368 -13.16279 -12.83551 -12.68523 -12.56494 -12.29449 -11.97589 -11.89908 -11.80743 -11.61650 -11.31951 -10.95585 -10.80673 -10.73800 -10.52058 -10.15125 -9.72462 -9.03497 -8.92244 -7.73819 -5.20533 -1.39100 0.38397 1.27169 1.39701 1.48726 1.49601 1.59622 1.74771 2.24162 2.50223 2.52193 2.68057 2.80464 3.04046 3.33481 3.49631 3.61337 3.68140 3.77922 3.89949 4.04439 4.20124 4.28565 4.32019 4.41574 4.44879 4.61867 4.65770 4.72108 4.85293 4.96859 5.05834 5.15692 5.16297 5.35565 5.38029 5.40505 5.47997 5.54431 5.61819 5.83107 5.91522 6.24596 6.31255 6.54653 6.80409 6.98310 7.05436 7.72833 8.47717 9.27436 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.035304 B = 0.001990 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.924299 B =14065.792721 C =14535.952794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.073 4.073 3 Si 0.981 3.019 4 H -0.267 1.267 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.227 4.227 8 H 0.083 0.917 9 N -0.629 5.629 10 C 0.153 3.847 11 C -0.163 4.163 12 H 0.119 0.881 13 C -0.110 4.110 14 H 0.114 0.886 15 C 0.160 3.840 16 N -0.686 5.686 17 C 0.559 3.441 18 O -0.551 6.551 19 C 0.200 3.800 20 N -0.531 5.531 21 C 0.383 3.617 22 N -0.499 5.499 23 H 0.451 0.549 24 C 0.253 3.747 25 N -0.540 5.540 26 C 0.053 3.947 27 C -0.223 4.223 28 C -0.190 4.190 29 C -0.172 4.172 30 H 0.106 0.894 31 C 0.153 3.847 32 H 0.247 0.753 33 H 0.054 0.946 34 H 0.035 0.965 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.423 0.577 38 H 0.291 0.709 39 H 0.186 0.814 40 H 0.138 0.862 41 H 0.006 0.994 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.171 -27.058 -6.611 27.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.265 4.265 3 Si 0.810 3.190 4 H -0.191 1.191 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.355 4.355 8 H 0.101 0.899 9 N -0.355 5.355 10 C 0.028 3.972 11 C -0.182 4.182 12 H 0.137 0.863 13 C -0.129 4.129 14 H 0.132 0.868 15 C 0.037 3.963 16 N -0.338 5.338 17 C 0.343 3.657 18 O -0.428 6.428 19 C 0.064 3.936 20 N -0.251 5.251 21 C 0.101 3.899 22 N -0.104 5.104 23 H 0.295 0.705 24 C -0.002 4.002 25 N -0.261 5.261 26 C -0.089 4.089 27 C -0.247 4.247 28 C -0.203 4.203 29 C -0.192 4.192 30 H 0.124 0.876 31 C 0.029 3.971 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.261 0.739 38 H 0.306 0.694 39 H 0.203 0.797 40 H 0.156 0.844 41 H 0.024 0.976 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.331 -27.000 -6.317 27.761 hybrid contribution 0.060 0.975 0.373 1.045 sum -1.271 -26.026 -5.944 26.726 Atomic orbital electron populations 1.69770 1.06187 1.24812 1.59215 1.25591 0.96614 1.00859 1.03406 0.84957 0.78073 0.79373 0.76613 1.19104 1.21994 1.22100 1.19519 0.90910 0.83546 1.41563 0.89897 1.46500 1.02288 1.00622 1.86043 1.21262 0.95642 0.84212 0.96058 1.23954 0.89854 1.02524 1.01907 0.86288 1.22415 0.99021 0.91743 0.99699 0.86783 1.20820 1.00883 0.80837 0.93794 1.45755 1.58051 1.07307 1.22674 1.18130 0.79079 0.83352 0.85172 1.90782 1.45145 1.85628 1.21240 1.21030 0.90121 0.91988 0.90475 1.67883 1.22609 1.28269 1.06363 1.26240 0.87447 0.76722 0.99452 1.41976 1.41019 1.14574 1.12862 0.70528 1.20687 0.99161 0.91888 0.88462 1.69536 1.19162 1.30691 1.06706 1.22988 0.98803 0.93399 0.93741 1.21601 1.07250 0.97099 0.98784 1.21025 1.06986 0.93273 0.98996 1.23862 1.01843 0.91293 1.02202 0.87637 1.22287 0.84647 0.96248 0.93889 0.94274 0.92744 0.94705 0.91048 0.90765 0.73850 0.69425 0.79724 0.84417 0.97638 0.88136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.01 10.12 21.65 0.22 -55.79 16 2 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 3 Si 0.98 45.33 29.55 68.60 2.03 47.36 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 6 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 7 C -0.23 -12.54 10.42 84.03 0.88 -11.66 16 8 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 9 N -0.63 -31.91 3.46 -678.23 -2.35 -34.26 16 10 C 0.15 6.03 7.05 86.53 0.61 6.64 16 11 C -0.16 -5.36 6.74 -9.88 -0.07 -5.42 16 12 H 0.12 3.57 8.12 -2.39 -0.02 3.55 16 13 C -0.11 -3.05 5.38 -10.79 -0.06 -3.11 16 14 H 0.11 3.00 8.04 -2.39 -0.02 2.98 16 15 C 0.16 3.97 5.95 86.38 0.51 4.48 16 16 N -0.69 -15.02 5.55 -465.21 -2.58 -17.60 16 17 C 0.56 14.46 7.84 87.02 0.68 15.14 16 18 O -0.55 -18.12 15.42 -3.56 -0.05 -18.18 16 19 C 0.20 4.28 6.83 41.98 0.29 4.57 16 20 N -0.53 -6.59 9.58 -187.67 -1.80 -8.38 16 21 C 0.38 0.89 12.24 180.48 2.21 3.10 16 22 N -0.50 -2.71 5.32 -191.95 -1.02 -3.73 16 23 H 0.45 -1.31 8.93 -92.71 -0.83 -2.14 16 24 C 0.25 4.74 8.71 136.29 1.19 5.92 16 25 N -0.54 -12.47 11.16 -188.44 -2.10 -14.58 16 26 C 0.05 1.24 11.70 83.93 0.98 2.22 16 27 C -0.22 -5.89 10.25 22.36 0.23 -5.66 16 28 C -0.19 -4.58 6.19 -19.88 -0.12 -4.71 16 29 C -0.17 -6.36 6.76 -9.90 -0.07 -6.42 16 30 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 31 C 0.15 7.36 6.43 85.78 0.55 7.91 16 32 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 33 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.07 1.85 7.94 -2.39 -0.02 1.83 16 36 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.42 7.41 7.80 -92.71 -0.72 6.69 16 38 H 0.29 -3.44 8.06 -2.91 -0.02 -3.46 16 39 H 0.19 3.22 8.06 -2.91 -0.02 3.19 16 40 H 0.14 3.88 7.38 -2.91 -0.02 3.86 16 41 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.10 5.59 5.34 -2.39 -0.01 5.58 16 Total: -1.00 -83.40 355.98 0.16 -83.24 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -0.46 Total: 12.55 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 8.28 Total: 9.37 kcal Atomic # 7 Polarization: -124.70 SS G_CDS: -9.63 Total: -134.34 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.05 Total: -18.18 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -83.40 0.16 -83.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978408392.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.629 kcal (2) G-P(sol) polarization free energy of solvation -83.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds