Wall clock time and date at job start Fri Apr 10 2020 18:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 119.99622 * 2 1 4 4 H 1.48497 * 109.47463 * 274.44615 * 3 2 1 5 5 H 1.48499 * 109.47356 * 34.44785 * 3 2 1 6 6 H 1.48501 * 109.46796 * 154.44562 * 3 2 1 7 7 C 1.38814 * 119.99918 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99573 * 189.00719 * 7 2 1 9 9 N 1.36937 * 120.00161 * 9.00131 * 7 2 1 10 10 C 1.48145 * 127.83527 * 15.57770 * 9 7 2 11 11 C 1.54390 * 104.61455 * 140.39224 * 10 9 7 12 12 H 1.09004 * 118.18175 * 244.20138 * 11 10 9 13 13 C 1.52997 * 118.12483 * 87.19111 * 11 10 9 14 14 H 1.08996 * 117.44557 * 16.05791 * 13 11 10 15 15 C 1.52999 * 117.44581 * 160.80893 * 13 11 10 16 16 N 1.46503 * 109.47396 * 184.99910 * 15 13 11 17 17 C 1.34770 * 120.00296 * 180.02562 * 16 15 13 18 18 O 1.21632 * 119.99929 * 359.97438 * 17 16 15 19 19 C 1.47210 * 120.00157 * 179.97438 * 17 16 15 20 20 C 1.37757 * 119.93963 * 180.02562 * 19 17 16 21 21 C 1.39860 * 119.92825 * 179.97438 * 20 19 17 22 22 C 1.36295 * 119.81909 * 0.02562 * 21 20 19 23 23 C 1.40772 * 119.71555 * 359.97438 * 22 21 20 24 24 N 1.32812 * 132.74979 * 180.02562 * 23 22 21 25 25 C 1.32380 * 109.74699 * 180.02562 * 24 23 22 26 26 N 1.31389 * 109.61121 * 0.02562 * 25 24 23 27 27 N 1.36556 * 119.87270 * 0.02562 * 23 22 21 28 28 C 1.52997 * 60.55692 * 268.45399 * 13 11 10 29 29 H 1.09002 * 119.54718 * 248.23085 * 28 13 11 30 30 C 1.48143 * 127.83611 * 195.54697 * 9 7 2 31 31 H 0.96997 * 120.00423 * 359.97438 * 1 2 3 32 32 H 1.09000 * 110.41003 * 21.60659 * 10 9 7 33 33 H 1.09001 * 110.40566 * 259.17153 * 10 9 7 34 34 H 1.09003 * 109.47044 * 64.99968 * 15 13 11 35 35 H 1.09004 * 109.46968 * 304.99775 * 15 13 11 36 36 H 0.97005 * 119.99682 * 359.97438 * 16 15 13 37 37 H 1.07996 * 120.03337 * 0.02851 * 20 19 17 38 38 H 1.08001 * 120.08937 * 179.97438 * 21 20 19 39 39 H 1.08003 * 120.14307 * 180.02562 * 22 21 20 40 40 H 1.07997 * 125.18944 * 180.02562 * 25 24 23 41 41 H 1.08997 * 110.40792 * 100.82671 * 30 9 7 42 42 H 1.09002 * 110.51117 * 338.44718 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4036 2.1008 -1.3958 5 1 1.4977 2.6237 0.7919 6 1 3.5915 1.4149 0.6040 7 6 2.0103 -1.2022 -0.0005 8 1 3.0803 -1.2079 0.1459 9 7 1.3383 -2.3807 -0.1866 10 6 -0.0352 -2.5711 -0.7083 11 6 0.0617 -3.8170 -1.6149 12 1 -0.1269 -3.6936 -2.6814 13 6 -0.1194 -5.1931 -0.9712 14 1 -0.5670 -5.2282 0.0220 15 6 -0.4696 -6.3625 -1.8936 16 7 -0.7185 -7.5614 -1.0892 17 6 -1.0457 -8.7215 -1.6921 18 8 -1.1349 -8.7729 -2.9041 19 6 -1.2952 -9.9263 -0.8839 20 6 -1.6291 -11.1115 -1.5015 21 6 -1.8656 -12.2562 -0.7335 22 6 -1.7651 -12.1939 0.6244 23 6 -1.4232 -10.9769 1.2437 24 7 -1.2561 -10.6276 2.5141 25 6 -0.9331 -9.3458 2.5868 26 7 -0.8830 -8.8344 1.3776 27 7 -1.1949 -9.8667 0.4821 28 6 1.2848 -4.5974 -1.0902 29 1 2.0075 -5.0552 -1.7657 30 6 1.8200 -3.7545 0.0876 31 1 -0.4850 0.8400 0.0004 32 1 -0.3452 -1.7020 -1.2886 33 1 -0.7315 -2.7503 0.1109 34 1 0.3601 -6.5484 -2.5756 35 1 -1.3637 -6.1177 -2.4671 36 1 -0.6470 -7.5204 -0.1227 37 1 -1.7073 -11.1569 -2.5777 38 1 -2.1280 -13.1866 -1.2149 39 1 -1.9462 -13.0748 1.2225 40 1 -0.7403 -8.8035 3.5006 41 1 1.4134 -4.1187 1.0311 42 1 2.9095 -3.7801 0.1091 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978471951.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:18 Heat of formation + Delta-G solvation = 156.434421 kcal Electronic energy + Delta-G solvation = -26562.044299 eV Core-core repulsion = 22739.745830 eV Total energy + Delta-G solvation = -3822.298469 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.144 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -43.15484 -40.10500 -38.84951 -37.90948 -35.20766 -34.18485 -33.23633 -31.42189 -30.89252 -30.41605 -27.70966 -27.12396 -25.51406 -24.46730 -23.92722 -22.85222 -21.17491 -21.04058 -19.91980 -19.27923 -18.47753 -17.93754 -17.14629 -16.81255 -16.76949 -16.27227 -16.00159 -15.35835 -14.93574 -14.59719 -14.48435 -14.06028 -13.73784 -13.44593 -13.18896 -13.17706 -12.85184 -12.68627 -12.50094 -12.12207 -11.85641 -11.68513 -11.27433 -11.11438 -10.85184 -10.76879 -10.66960 -10.37899 -10.28114 -10.12559 -10.07110 -9.74918 -9.48516 -9.17965 -9.03353 -8.77585 -8.64444 -6.87223 -5.80219 -3.14611 -0.27381 0.43363 1.48772 1.98141 2.59245 2.72949 3.00972 3.37828 3.43206 3.45300 3.46211 3.64103 4.09699 4.23993 4.29186 4.37734 4.46038 4.67305 4.83953 4.89000 5.19779 5.26908 5.37697 5.41267 5.43893 5.48494 5.61929 5.71927 5.73043 5.84093 5.88617 5.93056 5.95277 6.09906 6.21195 6.25483 6.54110 6.65968 6.70440 6.91666 7.27205 7.35566 7.48939 7.52778 7.71274 7.86718 8.20421 9.10598 9.73284 10.50518 11.34121 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.024280 B = 0.002373 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.955142 B =11798.624746 C =12582.830956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.594 5.594 10 C 0.184 3.816 11 C -0.160 4.160 12 H 0.104 0.896 13 C -0.151 4.151 14 H 0.104 0.896 15 C 0.152 3.848 16 N -0.703 5.703 17 C 0.556 3.444 18 O -0.527 6.527 19 C 0.092 3.908 20 C -0.081 4.081 21 C -0.070 4.070 22 C -0.081 4.081 23 C 0.277 3.723 24 N -0.540 5.540 25 C 0.252 3.748 26 N -0.347 5.347 27 N -0.276 5.276 28 C -0.170 4.170 29 H 0.103 0.897 30 C 0.154 3.846 31 H 0.254 0.746 32 H 0.091 0.909 33 H 0.024 0.976 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.418 0.582 37 H 0.175 0.825 38 H 0.161 0.839 39 H 0.163 0.837 40 H 0.232 0.768 41 H 0.024 0.976 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.091 -26.565 -0.672 27.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.317 5.317 10 C 0.058 3.942 11 C -0.180 4.180 12 H 0.122 0.878 13 C -0.170 4.170 14 H 0.122 0.878 15 C 0.029 3.971 16 N -0.358 5.358 17 C 0.339 3.661 18 O -0.404 6.404 19 C -0.020 4.020 20 C -0.105 4.105 21 C -0.096 4.096 22 C -0.102 4.102 23 C 0.024 3.976 24 N -0.269 5.269 25 C -0.048 4.048 26 N -0.179 5.179 27 N -0.054 5.054 28 C -0.190 4.190 29 H 0.121 0.879 30 C 0.028 3.972 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.042 0.958 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.260 0.740 37 H 0.193 0.807 38 H 0.179 0.821 39 H 0.181 0.819 40 H 0.248 0.752 41 H 0.042 0.958 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.962 -25.589 -1.172 26.092 hybrid contribution 0.433 0.760 0.409 0.965 sum -4.530 -24.830 -0.763 25.251 Atomic orbital electron populations 1.69898 1.05058 1.25400 1.55858 1.24903 0.95657 0.97990 1.01787 0.86084 0.78718 0.83291 0.77564 1.21525 1.21666 1.20499 1.19018 0.90809 0.82361 1.43282 0.90548 1.45201 1.13228 0.99985 1.73329 1.21072 0.86853 0.92685 0.93589 1.24247 1.02042 0.91622 1.00104 0.87803 1.22505 1.00602 0.93607 1.00311 0.87826 1.20998 1.01385 0.81955 0.92761 1.46414 1.67417 1.08968 1.12989 1.17493 0.78804 0.82615 0.87148 1.90863 1.52537 1.84665 1.12352 1.20653 1.04732 0.97633 0.78945 1.21534 0.97178 0.89149 1.02599 1.21293 0.96238 0.99251 0.92813 1.20563 1.00122 0.94735 0.94800 1.21873 0.98439 0.89897 0.87421 1.70872 1.26880 1.13948 1.15238 1.26251 0.93017 0.89405 0.96143 1.78045 1.31563 1.08399 0.99927 1.47931 1.42070 1.09488 1.05863 1.23994 0.89774 1.02545 1.02721 0.87923 1.21135 0.97125 0.85985 0.92984 0.93561 0.89107 0.95848 0.90966 0.90630 0.73967 0.80735 0.82142 0.81920 0.75169 0.95787 0.93181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.91 10.86 55.49 0.60 -26.31 16 2 C -0.01 -0.18 5.40 -17.43 -0.09 -0.27 16 3 Si 0.91 22.03 29.56 -169.99 -5.03 17.00 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.23 -6.35 10.35 -15.06 -0.16 -6.51 16 8 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 9 N -0.59 -15.35 3.38 -168.86 -0.57 -15.92 16 10 C 0.18 4.44 5.70 -2.41 -0.01 4.43 16 11 C -0.16 -3.05 6.85 -89.22 -0.61 -3.66 16 12 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 13 C -0.15 -2.45 5.39 -90.62 -0.49 -2.93 16 14 H 0.10 1.73 8.04 -51.93 -0.42 1.32 16 15 C 0.15 2.17 5.95 -4.04 -0.02 2.15 16 16 N -0.70 -9.63 5.55 -61.45 -0.34 -9.97 16 17 C 0.56 7.39 7.78 -12.62 -0.10 7.29 16 18 O -0.53 -7.96 16.29 5.25 0.09 -7.87 16 19 C 0.09 0.98 6.80 -82.05 -0.56 0.42 16 20 C -0.08 -0.57 9.58 -39.15 -0.38 -0.94 16 21 C -0.07 -0.30 10.04 -39.67 -0.40 -0.70 16 22 C -0.08 -0.49 10.09 -39.32 -0.40 -0.88 16 23 C 0.28 2.80 7.88 -156.38 -1.23 1.57 16 24 N -0.54 -5.97 11.24 -13.99 -0.16 -6.13 16 25 C 0.25 2.58 12.98 -92.00 -1.19 1.38 16 26 N -0.35 -4.19 9.98 29.25 0.29 -3.90 16 27 N -0.28 -3.14 3.92 -8.81 -0.03 -3.18 16 28 C -0.17 -3.08 6.74 -89.22 -0.60 -3.68 16 29 H 0.10 1.71 8.12 -51.93 -0.42 1.29 16 30 C 0.15 3.27 7.04 -2.41 -0.02 3.26 16 31 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.09 2.45 6.51 -51.93 -0.34 2.11 16 33 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 1.03 7.94 -51.93 -0.41 0.62 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.42 5.70 5.35 -40.82 -0.22 5.48 16 37 H 0.18 0.98 7.59 -52.49 -0.40 0.58 16 38 H 0.16 0.06 8.06 -52.49 -0.42 -0.36 16 39 H 0.16 0.54 8.06 -52.48 -0.42 0.11 16 40 H 0.23 1.45 8.06 -52.49 -0.42 1.03 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 355.27 15.07 5.35 5.35 Total: -1.00 -34.48 355.27 -11.19 -45.67 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -5.13 Total: 4.34 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -6.26 Total: 0.91 kcal Atomic # 7 Polarization: -65.19 SS G_CDS: -0.21 Total: -65.40 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: 0.09 Total: -7.87 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.48 -11.19 -45.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978471951.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.103 kcal (2) G-P(sol) polarization free energy of solvation -34.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds