Wall clock time and date at job start Fri Apr 10 2020 18:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 119.99622 * 2 1 4 4 H 1.48497 * 109.47463 * 274.44615 * 3 2 1 5 5 H 1.48499 * 109.47356 * 34.44785 * 3 2 1 6 6 H 1.48501 * 109.46796 * 154.44562 * 3 2 1 7 7 C 1.38814 * 119.99918 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99573 * 189.00719 * 7 2 1 9 9 N 1.36937 * 120.00161 * 9.00131 * 7 2 1 10 10 C 1.48145 * 127.83527 * 15.57770 * 9 7 2 11 11 C 1.54390 * 104.61455 * 140.39224 * 10 9 7 12 12 H 1.09004 * 118.18175 * 244.20138 * 11 10 9 13 13 C 1.52997 * 118.12483 * 87.19111 * 11 10 9 14 14 H 1.08996 * 117.44557 * 16.05791 * 13 11 10 15 15 C 1.52999 * 117.44581 * 160.80893 * 13 11 10 16 16 N 1.46503 * 109.47396 * 184.99910 * 15 13 11 17 17 C 1.34770 * 120.00296 * 180.02562 * 16 15 13 18 18 O 1.21632 * 119.99929 * 359.97438 * 17 16 15 19 19 C 1.47210 * 120.00157 * 179.97438 * 17 16 15 20 20 C 1.37757 * 119.93963 * 180.02562 * 19 17 16 21 21 C 1.39860 * 119.92825 * 179.97438 * 20 19 17 22 22 C 1.36295 * 119.81909 * 0.02562 * 21 20 19 23 23 C 1.40772 * 119.71555 * 359.97438 * 22 21 20 24 24 N 1.32812 * 132.74979 * 180.02562 * 23 22 21 25 25 C 1.32380 * 109.74699 * 180.02562 * 24 23 22 26 26 N 1.31389 * 109.61121 * 0.02562 * 25 24 23 27 27 N 1.36556 * 119.87270 * 0.02562 * 23 22 21 28 28 C 1.52997 * 60.55692 * 268.45399 * 13 11 10 29 29 H 1.09002 * 119.54718 * 248.23085 * 28 13 11 30 30 C 1.48143 * 127.83611 * 195.54697 * 9 7 2 31 31 H 0.96997 * 120.00423 * 359.97438 * 1 2 3 32 32 H 1.09000 * 110.41003 * 21.60659 * 10 9 7 33 33 H 1.09001 * 110.40566 * 259.17153 * 10 9 7 34 34 H 1.09003 * 109.47044 * 64.99968 * 15 13 11 35 35 H 1.09004 * 109.46968 * 304.99775 * 15 13 11 36 36 H 0.97005 * 119.99682 * 359.97438 * 16 15 13 37 37 H 1.07996 * 120.03337 * 0.02851 * 20 19 17 38 38 H 1.08001 * 120.08937 * 179.97438 * 21 20 19 39 39 H 1.08003 * 120.14307 * 180.02562 * 22 21 20 40 40 H 1.07997 * 125.18944 * 180.02562 * 25 24 23 41 41 H 1.08997 * 110.40792 * 100.82671 * 30 9 7 42 42 H 1.09002 * 110.51117 * 338.44718 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4036 2.1008 -1.3958 5 1 1.4977 2.6237 0.7919 6 1 3.5915 1.4149 0.6040 7 6 2.0103 -1.2022 -0.0005 8 1 3.0803 -1.2079 0.1459 9 7 1.3383 -2.3807 -0.1866 10 6 -0.0352 -2.5711 -0.7083 11 6 0.0617 -3.8170 -1.6149 12 1 -0.1269 -3.6936 -2.6814 13 6 -0.1194 -5.1931 -0.9712 14 1 -0.5670 -5.2282 0.0220 15 6 -0.4696 -6.3625 -1.8936 16 7 -0.7185 -7.5614 -1.0892 17 6 -1.0457 -8.7215 -1.6921 18 8 -1.1349 -8.7729 -2.9041 19 6 -1.2952 -9.9263 -0.8839 20 6 -1.6291 -11.1115 -1.5015 21 6 -1.8656 -12.2562 -0.7335 22 6 -1.7651 -12.1939 0.6244 23 6 -1.4232 -10.9769 1.2437 24 7 -1.2561 -10.6276 2.5141 25 6 -0.9331 -9.3458 2.5868 26 7 -0.8830 -8.8344 1.3776 27 7 -1.1949 -9.8667 0.4821 28 6 1.2848 -4.5974 -1.0902 29 1 2.0075 -5.0552 -1.7657 30 6 1.8200 -3.7545 0.0876 31 1 -0.4850 0.8400 0.0004 32 1 -0.3452 -1.7020 -1.2886 33 1 -0.7315 -2.7503 0.1109 34 1 0.3601 -6.5484 -2.5756 35 1 -1.3637 -6.1177 -2.4671 36 1 -0.6470 -7.5204 -0.1227 37 1 -1.7073 -11.1569 -2.5777 38 1 -2.1280 -13.1866 -1.2149 39 1 -1.9462 -13.0748 1.2225 40 1 -0.7403 -8.8035 3.5006 41 1 1.4134 -4.1187 1.0311 42 1 2.9095 -3.7801 0.1091 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978471951.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:15 Heat of formation + Delta-G solvation = 135.326050 kcal Electronic energy + Delta-G solvation = -26562.959627 eV Core-core repulsion = 22739.745830 eV Total energy + Delta-G solvation = -3823.213796 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.144 amu Computer time = 2.58 seconds Orbital eigenvalues (eV) -43.83653 -41.14582 -40.34761 -38.60173 -36.50089 -35.31047 -34.55102 -32.73520 -32.07306 -31.14746 -29.15535 -28.88604 -27.02939 -25.46342 -24.57490 -23.72151 -22.77808 -22.17138 -21.28617 -20.90207 -19.27652 -18.87309 -18.64140 -17.85714 -17.52403 -17.13345 -16.84320 -16.72109 -16.39180 -16.04359 -15.45847 -15.23616 -15.19740 -14.70305 -14.57862 -14.29910 -13.95728 -13.63761 -13.44870 -13.23000 -13.21178 -12.92538 -12.78998 -12.75516 -12.35104 -12.31081 -12.03377 -11.97319 -11.81228 -11.65909 -11.22960 -10.98953 -10.77230 -10.72566 -10.63814 -10.23872 -9.45157 -8.94402 -7.93995 -5.30987 -0.89133 -0.15740 0.83026 1.24265 1.44901 1.46840 1.56161 1.78364 1.79068 2.34713 2.45531 2.64222 2.83569 2.99662 3.22536 3.49090 3.54704 3.65676 3.77946 3.79828 3.91542 4.04969 4.12124 4.19241 4.35808 4.37833 4.49167 4.54406 4.60993 4.79122 4.87412 4.94681 4.96503 5.04942 5.07975 5.21177 5.26028 5.27178 5.30495 5.41663 5.48142 5.49503 5.62661 6.14799 6.26690 6.76242 6.86166 6.98194 7.65019 8.43679 9.19872 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.024280 B = 0.002373 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.955142 B =11798.624746 C =12582.830956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.064 4.064 3 Si 0.982 3.018 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.266 1.266 7 C -0.242 4.242 8 H 0.081 0.919 9 N -0.619 5.619 10 C 0.189 3.811 11 C -0.168 4.168 12 H 0.120 0.880 13 C -0.118 4.118 14 H 0.098 0.902 15 C 0.160 3.840 16 N -0.709 5.709 17 C 0.556 3.444 18 O -0.552 6.552 19 C 0.047 3.953 20 C -0.053 4.053 21 C -0.049 4.049 22 C -0.074 4.074 23 C 0.258 3.742 24 N -0.562 5.562 25 C 0.245 3.755 26 N -0.383 5.383 27 N -0.284 5.284 28 C -0.160 4.160 29 H 0.127 0.873 30 C 0.148 3.852 31 H 0.250 0.750 32 H 0.056 0.944 33 H -0.001 1.001 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.418 0.582 37 H 0.192 0.808 38 H 0.214 0.786 39 H 0.195 0.805 40 H 0.257 0.743 41 H 0.023 0.977 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.822 -29.823 -1.528 30.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.257 4.257 3 Si 0.810 3.190 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.191 1.191 7 C -0.370 4.370 8 H 0.099 0.901 9 N -0.343 5.343 10 C 0.063 3.937 11 C -0.188 4.188 12 H 0.138 0.862 13 C -0.137 4.137 14 H 0.116 0.884 15 C 0.037 3.963 16 N -0.364 5.364 17 C 0.342 3.658 18 O -0.431 6.431 19 C -0.064 4.064 20 C -0.076 4.076 21 C -0.074 4.074 22 C -0.095 4.095 23 C 0.006 3.994 24 N -0.293 5.293 25 C -0.054 4.054 26 N -0.216 5.216 27 N -0.061 5.061 28 C -0.179 4.179 29 H 0.145 0.855 30 C 0.023 3.977 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.017 0.983 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.261 0.739 37 H 0.209 0.791 38 H 0.230 0.770 39 H 0.212 0.788 40 H 0.272 0.728 41 H 0.041 0.959 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.680 -28.893 -2.027 29.339 hybrid contribution 0.302 1.601 0.693 1.770 sum -4.378 -27.292 -1.334 27.673 Atomic orbital electron populations 1.70097 1.06563 1.25788 1.57134 1.25774 0.96538 1.01376 1.02022 0.85013 0.77851 0.78752 0.77407 1.21227 1.21989 1.19062 1.19408 0.91350 0.83595 1.42688 0.90098 1.45514 1.13718 1.01144 1.73907 1.20805 0.86002 0.93748 0.93126 1.23944 1.04007 0.90848 1.00038 0.86217 1.22364 0.98715 0.92566 1.00014 0.88444 1.20832 1.01718 0.81537 0.92194 1.46425 1.67936 1.09105 1.12950 1.17829 0.77776 0.83071 0.87141 1.90834 1.53778 1.85217 1.13292 1.20590 1.09127 0.97879 0.78762 1.22030 0.93450 0.88537 1.03627 1.21848 0.93801 0.99944 0.91856 1.21144 0.98493 0.94049 0.95862 1.22596 0.98672 0.90883 0.87271 1.70854 1.27972 1.14323 1.16118 1.26789 0.92474 0.89556 0.96611 1.77923 1.33182 1.09853 1.00669 1.47886 1.42544 1.09672 1.06001 1.23935 0.90474 1.02134 1.01395 0.85531 1.21272 0.97738 0.84457 0.94203 0.94069 0.92528 0.98308 0.90367 0.90351 0.73949 0.79120 0.76951 0.78831 0.72769 0.95949 0.92332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.81 10.86 21.65 0.24 -57.58 16 2 C -0.06 -3.66 5.40 84.86 0.46 -3.20 16 3 Si 0.98 46.04 29.56 68.60 2.03 48.07 16 4 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 7 C -0.24 -13.81 10.35 84.03 0.87 -12.94 16 8 H 0.08 4.42 7.84 -2.91 -0.02 4.39 16 9 N -0.62 -32.78 3.38 -688.14 -2.33 -35.10 16 10 C 0.19 9.52 5.70 86.53 0.49 10.01 16 11 C -0.17 -6.45 6.85 -9.89 -0.07 -6.52 16 12 H 0.12 4.22 8.14 -2.38 -0.02 4.20 16 13 C -0.12 -3.75 5.39 -10.80 -0.06 -3.81 16 14 H 0.10 3.29 8.04 -2.39 -0.02 3.27 16 15 C 0.16 4.44 5.95 86.38 0.51 4.95 16 16 N -0.71 -19.19 5.55 -466.57 -2.59 -21.78 16 17 C 0.56 14.42 7.78 86.60 0.67 15.09 16 18 O -0.55 -16.13 16.29 -4.13 -0.07 -16.20 16 19 C 0.05 0.95 6.80 40.57 0.28 1.22 16 20 C -0.05 -0.57 9.58 22.55 0.22 -0.36 16 21 C -0.05 -0.19 10.04 22.21 0.22 0.04 16 22 C -0.07 -0.62 10.09 22.44 0.23 -0.40 16 23 C 0.26 4.84 7.88 134.16 1.06 5.89 16 24 N -0.56 -12.11 11.24 -198.17 -2.23 -14.34 16 25 C 0.25 5.07 12.98 180.83 2.35 7.41 16 26 N -0.38 -9.38 9.98 -61.38 -0.61 -9.99 16 27 N -0.28 -6.28 3.92 -181.80 -0.71 -6.99 16 28 C -0.16 -5.64 6.74 -9.89 -0.07 -5.70 16 29 H 0.13 3.92 8.12 -2.39 -0.02 3.90 16 30 C 0.15 6.33 7.04 86.54 0.61 6.94 16 31 H 0.25 14.74 8.31 -92.71 -0.77 13.96 16 32 H 0.06 3.21 6.51 -2.39 -0.02 3.20 16 33 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 34 H 0.08 2.11 7.94 -2.39 -0.02 2.09 16 35 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.42 11.49 5.35 -92.70 -0.50 10.99 16 37 H 0.19 1.43 7.59 -2.91 -0.02 1.41 16 38 H 0.21 -1.35 8.06 -2.91 -0.02 -1.37 16 39 H 0.19 0.37 8.06 -2.91 -0.02 0.35 16 40 H 0.26 3.26 8.06 -2.91 -0.02 3.23 16 41 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -78.92 355.27 2.07 -76.85 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 0.57 Total: 18.42 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: 7.77 Total: 18.65 kcal Atomic # 7 Polarization: -137.55 SS G_CDS: -8.23 Total: -145.78 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.07 Total: -16.20 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -78.92 2.07 -76.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978471951.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.172 kcal (2) G-P(sol) polarization free energy of solvation -78.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.58 seconds