Wall clock time and date at job start Fri Apr 10 2020 18:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99976 * 2 1 4 4 H 1.48497 * 109.47267 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47325 * 60.00075 * 3 2 1 6 6 H 1.48498 * 109.47089 * 300.00328 * 3 2 1 7 7 C 1.38808 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00145 * 155.54525 * 7 2 1 9 9 N 1.36935 * 119.99819 * 335.54420 * 7 2 1 10 10 C 1.48147 * 127.83869 * 158.37094 * 9 7 2 11 11 C 1.54795 * 104.41932 * 140.36541 * 10 9 7 12 12 H 1.08994 * 118.33917 * 244.38936 * 11 10 9 13 13 C 1.53001 * 117.93058 * 87.46814 * 11 10 9 14 14 H 1.08998 * 117.45092 * 16.05396 * 13 11 10 15 15 C 1.53001 * 117.44051 * 160.76062 * 13 11 10 16 16 N 1.46500 * 109.47076 * 244.23943 * 15 13 11 17 17 C 1.34778 * 120.00011 * 179.97438 * 16 15 13 18 18 O 1.21587 * 120.00293 * 0.02562 * 17 16 15 19 19 C 1.47582 * 119.99796 * 179.97438 * 17 16 15 20 20 C 1.41524 * 120.56980 * 0.02562 * 19 17 16 21 21 N 1.30899 * 120.16989 * 179.97438 * 20 19 17 22 22 C 1.34264 * 121.27171 * 0.02562 * 21 20 19 23 23 N 1.32426 * 131.63505 * 179.97438 * 22 21 20 24 24 C 1.33692 * 109.32818 * 180.02562 * 23 22 21 25 25 C 1.34908 * 108.65480 * 359.97438 * 24 23 22 26 26 N 1.37011 * 107.05760 * 359.97438 * 25 24 23 27 27 C 1.35963 * 132.55012 * 180.27980 * 26 25 24 28 28 C 1.53005 * 60.55890 * 268.40834 * 13 11 10 29 29 H 1.08996 * 120.26097 * 248.52863 * 28 13 11 30 30 C 1.48149 * 127.83980 * 338.69653 * 9 7 2 31 31 H 0.96991 * 120.00119 * 174.37974 * 1 2 3 32 32 H 1.08996 * 110.41323 * 259.20313 * 10 9 7 33 33 H 1.09007 * 110.40590 * 21.63556 * 10 9 7 34 34 H 1.09005 * 109.46940 * 4.23489 * 15 13 11 35 35 H 1.08996 * 109.47868 * 124.23506 * 15 13 11 36 36 H 0.97000 * 120.00374 * 359.97438 * 16 15 13 37 37 H 1.08001 * 119.91607 * 359.95388 * 20 19 17 38 38 H 1.08000 * 125.67813 * 180.02562 * 24 23 22 39 39 H 1.08007 * 126.47434 * 180.02562 * 25 24 23 40 40 H 1.08001 * 120.58367 * 359.97438 * 27 26 25 41 41 H 1.08999 * 110.40501 * 338.36317 * 30 9 7 42 42 H 1.09000 * 110.40823 * 100.68521 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8915 2.3965 1.2125 6 1 1.8914 2.3965 -1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0176 -1.2439 -0.3877 9 7 1.4178 -2.3350 0.4899 10 6 1.7695 -3.7441 0.1974 11 6 1.6258 -4.4677 1.5583 12 1 2.5186 -4.8968 2.0129 13 6 0.2486 -5.0167 1.9360 14 1 -0.4890 -5.1147 1.1396 15 6 0.1923 -6.0933 3.0217 16 7 -0.3096 -7.3429 2.4448 17 6 -0.4442 -8.4370 3.2203 18 8 -0.1494 -8.3868 4.3989 19 6 -0.9504 -9.6956 2.6392 20 6 -1.2975 -9.7674 1.2691 21 7 -1.7452 -10.8879 0.7617 22 6 -1.8867 -11.9881 1.5182 23 7 -2.3125 -13.2076 1.2264 24 6 -2.2725 -13.9654 2.3271 25 6 -1.8101 -13.2168 3.3498 26 7 -1.5615 -11.9650 2.8513 27 6 -1.0868 -10.8258 3.4217 28 6 0.6377 -3.6010 2.3665 29 1 0.8021 -3.3727 3.4195 30 6 0.2753 -2.4297 1.4283 31 1 -0.4850 -0.8359 -0.0823 32 1 1.0793 -4.1643 -0.5340 33 1 2.7957 -3.8125 -0.1639 34 1 1.1920 -6.2552 3.4251 35 1 -0.4738 -5.7689 3.8211 36 1 -0.5451 -7.3829 1.5047 37 1 -1.1931 -8.8953 0.6406 38 1 -2.5614 -15.0042 2.3875 39 1 -1.6627 -13.5429 4.3689 40 1 -0.8262 -10.8032 4.4696 41 1 0.1726 -1.5053 1.9966 42 1 -0.6452 -2.6458 0.8858 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978499006.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:22 Heat of formation + Delta-G solvation = 137.666569 kcal Electronic energy + Delta-G solvation = -25896.322601 eV Core-core repulsion = 22073.210297 eV Total energy + Delta-G solvation = -3823.112304 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.144 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.56503 -40.40929 -39.09979 -38.24319 -35.54030 -35.03360 -33.73421 -31.92937 -30.75614 -29.80112 -27.72943 -27.31783 -25.47425 -24.81870 -24.18041 -22.41593 -21.39564 -21.31566 -20.17039 -19.50868 -19.10624 -18.36666 -17.57538 -17.48055 -16.91317 -16.38408 -15.87128 -15.58322 -15.00089 -14.70573 -14.49522 -14.25796 -14.02106 -13.96809 -13.83615 -13.38176 -13.28411 -13.05296 -12.88768 -12.35273 -12.08328 -11.71245 -11.23951 -11.01434 -10.73795 -10.71998 -10.61682 -10.51642 -10.26113 -10.11343 -9.81601 -9.70146 -9.68113 -9.27870 -9.22534 -8.76674 -8.53295 -7.05502 -6.18892 -3.25416 -0.25495 0.23977 1.65469 1.95399 2.56402 2.66497 2.98765 3.11256 3.47436 3.50637 3.63733 3.65103 3.79331 3.90248 4.10338 4.17322 4.49847 4.55484 4.68405 4.70588 4.83173 4.99613 5.04933 5.14123 5.23910 5.37179 5.46505 5.52988 5.65704 5.69192 5.76326 5.83803 5.90348 5.92124 6.00801 6.33016 6.42258 6.52413 6.69108 6.90296 6.90812 6.92829 7.03769 7.35924 7.69312 7.69775 8.39357 8.91316 9.72027 10.34572 11.16911 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.036344 B = 0.001891 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.225153 B =14802.802972 C =15217.519096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.026 4.026 3 Si 1.074 2.926 4 H -0.292 1.292 5 H -0.289 1.289 6 H -0.293 1.293 7 C -0.331 4.331 8 H 0.065 0.935 9 N -0.597 5.597 10 C 0.152 3.848 11 C -0.167 4.167 12 H 0.106 0.894 13 C -0.150 4.150 14 H 0.106 0.894 15 C 0.155 3.845 16 N -0.712 5.712 17 C 0.576 3.424 18 O -0.536 6.536 19 C -0.224 4.224 20 C 0.199 3.801 21 N -0.432 5.432 22 C 0.384 3.616 23 N -0.468 5.468 24 C 0.052 3.948 25 C -0.092 4.092 26 N -0.403 5.403 27 C 0.189 3.811 28 C -0.157 4.157 29 H 0.108 0.892 30 C 0.163 3.837 31 H 0.269 0.731 32 H 0.024 0.976 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.403 0.597 37 H 0.187 0.813 38 H 0.193 0.807 39 H 0.192 0.808 40 H 0.192 0.808 41 H 0.067 0.933 42 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.159 -24.614 8.793 26.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.227 4.227 3 Si 0.904 3.096 4 H -0.218 1.218 5 H -0.216 1.216 6 H -0.220 1.220 7 C -0.459 4.459 8 H 0.083 0.917 9 N -0.322 5.322 10 C 0.026 3.974 11 C -0.186 4.186 12 H 0.124 0.876 13 C -0.169 4.169 14 H 0.124 0.876 15 C 0.032 3.968 16 N -0.363 5.363 17 C 0.361 3.639 18 O -0.414 6.414 19 C -0.233 4.233 20 C 0.010 3.990 21 N -0.143 5.143 22 C 0.036 3.964 23 N -0.190 5.190 24 C -0.099 4.099 25 C -0.221 4.221 26 N -0.080 5.080 27 C 0.053 3.947 28 C -0.178 4.178 29 H 0.126 0.874 30 C 0.038 3.962 31 H 0.080 0.920 32 H 0.042 0.958 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.239 0.761 37 H 0.203 0.797 38 H 0.210 0.790 39 H 0.209 0.791 40 H 0.209 0.791 41 H 0.086 0.914 42 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -3.583 -23.370 7.994 24.958 hybrid contribution 0.567 -1.455 1.137 1.932 sum -3.016 -24.825 9.130 26.623 Atomic orbital electron populations 1.70717 1.06559 1.30302 1.48297 1.25888 0.96599 1.01305 0.98948 0.83397 0.74233 0.75237 0.76761 1.21775 1.21579 1.22009 1.19793 0.97239 0.86802 1.42051 0.91692 1.45317 1.37484 1.00228 1.49178 1.21236 0.98559 0.86128 0.91450 1.24108 0.91915 1.02749 0.99865 0.87554 1.22538 0.99526 0.94473 1.00345 0.87641 1.20966 0.99866 0.80856 0.95073 1.45867 1.66124 1.10802 1.13465 1.17358 0.78156 0.82434 0.85962 1.90832 1.50577 1.84484 1.15464 1.20669 1.11117 0.95609 0.95948 1.23448 0.89009 0.95108 0.91456 1.67825 1.15614 0.96953 1.33872 1.22207 1.01605 0.94529 0.78090 1.70757 1.21869 0.98522 1.27803 1.22740 0.99476 1.00438 0.87212 1.22829 1.13943 0.82857 1.02485 1.44068 1.41309 1.09689 1.12964 1.22606 0.89157 0.82563 1.00333 1.23960 1.03890 0.90300 0.99641 0.87404 1.21144 0.90597 0.94564 0.89945 0.92038 0.95831 0.92920 0.90799 0.90499 0.76108 0.79668 0.79036 0.79064 0.79139 0.91418 0.95593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.27 12.82 55.49 0.71 -26.56 16 2 C -0.03 -0.72 5.12 -17.43 -0.09 -0.81 16 3 Si 1.07 25.02 29.98 -169.99 -5.10 19.92 16 4 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.33 -9.18 10.19 -15.06 -0.15 -9.34 16 8 H 0.07 1.80 7.94 -52.49 -0.42 1.38 16 9 N -0.60 -14.72 3.22 -168.61 -0.54 -15.26 16 10 C 0.15 3.01 7.06 -2.19 -0.02 2.99 16 11 C -0.17 -2.62 6.76 -89.00 -0.60 -3.23 16 12 H 0.11 1.54 8.12 -51.93 -0.42 1.12 16 13 C -0.15 -1.92 5.39 -90.62 -0.49 -2.41 16 14 H 0.11 1.32 8.04 -51.93 -0.42 0.90 16 15 C 0.16 1.66 5.95 -4.04 -0.02 1.63 16 16 N -0.71 -6.13 5.51 -61.33 -0.34 -6.47 16 17 C 0.58 5.51 7.77 -12.45 -0.10 5.41 16 18 O -0.54 -6.80 16.38 5.29 0.09 -6.71 16 19 C -0.22 -1.79 5.89 -104.87 -0.62 -2.41 16 20 C 0.20 1.56 10.78 -16.70 -0.18 1.38 16 21 N -0.43 -4.79 10.45 -13.37 -0.14 -4.93 16 22 C 0.38 4.43 8.91 -322.24 -2.87 1.56 16 23 N -0.47 -5.55 11.31 -14.42 -0.16 -5.71 16 24 C 0.05 0.39 11.82 -17.92 -0.21 0.18 16 25 C -0.09 -0.58 11.76 -16.42 -0.19 -0.77 16 26 N -0.40 -3.47 2.94 -63.76 -0.19 -3.66 16 27 C 0.19 1.41 10.65 -15.76 -0.17 1.24 16 28 C -0.16 -2.64 6.85 -89.21 -0.61 -3.25 16 29 H 0.11 1.70 8.14 -51.93 -0.42 1.27 16 30 C 0.16 3.60 5.00 -2.41 -0.01 3.59 16 31 H 0.27 7.96 6.41 -40.82 -0.26 7.70 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 0.83 7.94 -51.93 -0.41 0.42 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.40 2.50 6.48 -40.82 -0.26 2.24 16 37 H 0.19 0.82 6.48 -52.49 -0.34 0.48 16 38 H 0.19 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.19 0.44 8.06 -52.48 -0.42 0.02 16 40 H 0.19 1.01 7.68 -52.49 -0.40 0.61 16 41 H 0.07 1.67 7.47 -51.93 -0.39 1.28 16 42 H 0.03 0.59 7.66 -51.93 -0.40 0.19 16 LS Contribution 356.73 15.07 5.38 5.38 Total: -1.00 -36.23 356.73 -11.68 -47.91 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -5.06 Total: 0.31 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -6.33 Total: -4.22 kcal Atomic # 7 Polarization: -61.92 SS G_CDS: -0.66 Total: -62.58 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: 0.09 Total: -6.71 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -5.10 Total: 19.92 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.23 -11.68 -47.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978499006.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.579 kcal (2) G-P(sol) polarization free energy of solvation -36.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds