Wall clock time and date at job start Fri Apr 10 2020 18:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99976 * 2 1 4 4 H 1.48497 * 109.47267 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47325 * 60.00075 * 3 2 1 6 6 H 1.48498 * 109.47089 * 300.00328 * 3 2 1 7 7 C 1.38808 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00145 * 155.54525 * 7 2 1 9 9 N 1.36935 * 119.99819 * 335.54420 * 7 2 1 10 10 C 1.48147 * 127.83869 * 158.37094 * 9 7 2 11 11 C 1.54795 * 104.41932 * 140.36541 * 10 9 7 12 12 H 1.08994 * 118.33917 * 244.38936 * 11 10 9 13 13 C 1.53001 * 117.93058 * 87.46814 * 11 10 9 14 14 H 1.08998 * 117.45092 * 16.05396 * 13 11 10 15 15 C 1.53001 * 117.44051 * 160.76062 * 13 11 10 16 16 N 1.46500 * 109.47076 * 244.23943 * 15 13 11 17 17 C 1.34778 * 120.00011 * 179.97438 * 16 15 13 18 18 O 1.21587 * 120.00293 * 0.02562 * 17 16 15 19 19 C 1.47582 * 119.99796 * 179.97438 * 17 16 15 20 20 C 1.41524 * 120.56980 * 0.02562 * 19 17 16 21 21 N 1.30899 * 120.16989 * 179.97438 * 20 19 17 22 22 C 1.34264 * 121.27171 * 0.02562 * 21 20 19 23 23 N 1.32426 * 131.63505 * 179.97438 * 22 21 20 24 24 C 1.33692 * 109.32818 * 180.02562 * 23 22 21 25 25 C 1.34908 * 108.65480 * 359.97438 * 24 23 22 26 26 N 1.37011 * 107.05760 * 359.97438 * 25 24 23 27 27 C 1.35963 * 132.55012 * 180.27980 * 26 25 24 28 28 C 1.53005 * 60.55890 * 268.40834 * 13 11 10 29 29 H 1.08996 * 120.26097 * 248.52863 * 28 13 11 30 30 C 1.48149 * 127.83980 * 338.69653 * 9 7 2 31 31 H 0.96991 * 120.00119 * 174.37974 * 1 2 3 32 32 H 1.08996 * 110.41323 * 259.20313 * 10 9 7 33 33 H 1.09007 * 110.40590 * 21.63556 * 10 9 7 34 34 H 1.09005 * 109.46940 * 4.23489 * 15 13 11 35 35 H 1.08996 * 109.47868 * 124.23506 * 15 13 11 36 36 H 0.97000 * 120.00374 * 359.97438 * 16 15 13 37 37 H 1.08001 * 119.91607 * 359.95388 * 20 19 17 38 38 H 1.08000 * 125.67813 * 180.02562 * 24 23 22 39 39 H 1.08007 * 126.47434 * 180.02562 * 25 24 23 40 40 H 1.08001 * 120.58367 * 359.97438 * 27 26 25 41 41 H 1.08999 * 110.40501 * 338.36317 * 30 9 7 42 42 H 1.09000 * 110.40823 * 100.68521 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8915 2.3965 1.2125 6 1 1.8914 2.3965 -1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0176 -1.2439 -0.3877 9 7 1.4178 -2.3350 0.4899 10 6 1.7695 -3.7441 0.1974 11 6 1.6258 -4.4677 1.5583 12 1 2.5186 -4.8968 2.0129 13 6 0.2486 -5.0167 1.9360 14 1 -0.4890 -5.1147 1.1396 15 6 0.1923 -6.0933 3.0217 16 7 -0.3096 -7.3429 2.4448 17 6 -0.4442 -8.4370 3.2203 18 8 -0.1494 -8.3868 4.3989 19 6 -0.9504 -9.6956 2.6392 20 6 -1.2975 -9.7674 1.2691 21 7 -1.7452 -10.8879 0.7617 22 6 -1.8867 -11.9881 1.5182 23 7 -2.3125 -13.2076 1.2264 24 6 -2.2725 -13.9654 2.3271 25 6 -1.8101 -13.2168 3.3498 26 7 -1.5615 -11.9650 2.8513 27 6 -1.0868 -10.8258 3.4217 28 6 0.6377 -3.6010 2.3665 29 1 0.8021 -3.3727 3.4195 30 6 0.2753 -2.4297 1.4283 31 1 -0.4850 -0.8359 -0.0823 32 1 1.0793 -4.1643 -0.5340 33 1 2.7957 -3.8125 -0.1639 34 1 1.1920 -6.2552 3.4251 35 1 -0.4738 -5.7689 3.8211 36 1 -0.5451 -7.3829 1.5047 37 1 -1.1931 -8.8953 0.6406 38 1 -2.5614 -15.0042 2.3875 39 1 -1.6627 -13.5429 4.3689 40 1 -0.8262 -10.8032 4.4696 41 1 0.1726 -1.5053 1.9966 42 1 -0.6452 -2.6458 0.8858 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978499006.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:22 Heat of formation + Delta-G solvation = 115.311982 kcal Electronic energy + Delta-G solvation = -25897.291968 eV Core-core repulsion = 22073.210297 eV Total energy + Delta-G solvation = -3824.081672 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.144 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.16066 -41.22446 -40.42756 -38.93118 -36.62343 -35.80170 -35.20493 -32.94773 -32.19194 -30.37857 -29.19330 -28.71088 -26.82014 -25.65889 -25.03422 -23.06285 -22.84833 -22.17531 -21.42241 -20.93528 -19.74777 -19.50552 -19.10573 -18.16741 -17.54502 -17.10432 -16.75523 -16.40530 -16.30319 -15.82930 -15.49730 -15.28219 -15.20587 -15.09601 -14.83106 -14.64260 -14.44740 -14.35053 -13.59088 -13.47780 -13.37360 -13.00119 -12.61352 -12.47732 -12.34840 -12.11450 -11.90773 -11.87717 -11.59554 -11.44838 -11.00331 -10.91267 -10.67639 -10.58994 -10.43020 -10.07693 -9.34870 -9.06635 -8.37270 -5.39671 -0.84022 -0.34691 1.08132 1.37194 1.57668 1.65823 1.81861 1.90352 1.91466 2.44009 2.45195 2.60375 2.66556 3.08023 3.16122 3.26716 3.46465 3.55046 3.57504 3.68175 3.75310 4.01764 4.12265 4.22379 4.27169 4.34202 4.36059 4.39545 4.49022 4.62616 4.73083 4.80485 4.91901 4.93153 5.05525 5.09466 5.28179 5.29297 5.30994 5.38875 5.45207 5.65103 6.27972 6.29468 6.35786 6.76178 6.83736 6.99197 7.64636 8.32734 8.98653 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.036344 B = 0.001891 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.225153 B =14802.802972 C =15217.519096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.080 4.080 3 Si 1.123 2.877 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.289 1.289 7 C -0.338 4.338 8 H 0.059 0.941 9 N -0.627 5.627 10 C 0.145 3.855 11 C -0.158 4.158 12 H 0.129 0.871 13 C -0.104 4.104 14 H 0.115 0.885 15 C 0.164 3.836 16 N -0.703 5.703 17 C 0.586 3.414 18 O -0.566 6.566 19 C -0.229 4.229 20 C 0.207 3.793 21 N -0.470 5.470 22 C 0.351 3.649 23 N -0.512 5.512 24 C 0.035 3.965 25 C -0.074 4.074 26 N -0.407 5.407 27 C 0.198 3.802 28 C -0.171 4.171 29 H 0.121 0.879 30 C 0.167 3.833 31 H 0.255 0.745 32 H 0.028 0.972 33 H 0.050 0.950 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.416 0.584 37 H 0.215 0.785 38 H 0.223 0.777 39 H 0.235 0.765 40 H 0.215 0.785 41 H 0.029 0.971 42 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.459 -26.452 10.420 28.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.276 4.276 3 Si 0.947 3.053 4 H -0.197 1.197 5 H -0.214 1.214 6 H -0.216 1.216 7 C -0.467 4.467 8 H 0.077 0.923 9 N -0.352 5.352 10 C 0.021 3.979 11 C -0.178 4.178 12 H 0.146 0.854 13 C -0.123 4.123 14 H 0.132 0.868 15 C 0.041 3.959 16 N -0.355 5.355 17 C 0.371 3.629 18 O -0.446 6.446 19 C -0.238 4.238 20 C 0.018 3.982 21 N -0.181 5.181 22 C 0.003 3.997 23 N -0.235 5.235 24 C -0.114 4.114 25 C -0.203 4.203 26 N -0.085 5.085 27 C 0.063 3.937 28 C -0.191 4.191 29 H 0.139 0.861 30 C 0.042 3.958 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.254 0.746 37 H 0.231 0.769 38 H 0.239 0.761 39 H 0.252 0.748 40 H 0.231 0.769 41 H 0.048 0.952 42 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -2.879 -25.261 9.608 27.180 hybrid contribution 0.339 -1.008 0.632 1.238 sum -2.540 -26.270 10.240 28.309 Atomic orbital electron populations 1.70833 1.07517 1.29496 1.51176 1.27266 0.96714 1.04699 0.98895 0.82749 0.74135 0.71644 0.76730 1.19694 1.21357 1.21630 1.20053 0.97092 0.88334 1.41191 0.92276 1.45629 1.37944 1.01452 1.50186 1.21394 0.98402 0.84193 0.93951 1.23990 0.94122 1.02748 0.96928 0.85370 1.22457 0.97388 0.92271 1.00180 0.86753 1.20768 1.00368 0.80773 0.93996 1.45695 1.65704 1.09958 1.14144 1.17380 0.77399 0.82675 0.85405 1.90826 1.52068 1.84972 1.16775 1.20500 1.11981 0.95240 0.96109 1.23889 0.87426 0.95067 0.91770 1.67817 1.17539 0.97817 1.34944 1.22333 1.03098 0.94766 0.79481 1.70676 1.23115 0.99550 1.30199 1.23378 0.99713 1.01735 0.86542 1.23605 1.11355 0.81507 1.03837 1.44188 1.41344 1.10634 1.12294 1.22994 0.87582 0.82010 1.01116 1.23704 1.05986 0.90242 0.99181 0.86090 1.20979 0.89606 0.95182 0.90037 0.93502 0.95438 0.93107 0.90461 0.90195 0.74563 0.76917 0.76096 0.74849 0.76857 0.95234 0.96878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.10 12.82 21.65 0.28 -57.83 16 2 C -0.08 -4.59 5.12 84.86 0.43 -4.16 16 3 Si 1.12 51.06 29.98 68.60 2.06 53.12 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 7 C -0.34 -19.11 10.19 84.03 0.86 -18.26 16 8 H 0.06 3.32 7.94 -2.91 -0.02 3.30 16 9 N -0.63 -31.37 3.22 -687.35 -2.21 -33.58 16 10 C 0.15 5.65 7.06 86.68 0.61 6.26 16 11 C -0.16 -4.62 6.76 -9.74 -0.07 -4.69 16 12 H 0.13 3.26 8.12 -2.39 -0.02 3.24 16 13 C -0.10 -2.37 5.39 -10.79 -0.06 -2.43 16 14 H 0.11 2.50 8.04 -2.39 -0.02 2.48 16 15 C 0.16 2.94 5.95 86.38 0.51 3.45 16 16 N -0.70 -9.75 5.51 -466.22 -2.57 -12.32 16 17 C 0.59 9.52 7.77 86.71 0.67 10.19 16 18 O -0.57 -12.82 16.38 -3.99 -0.07 -12.89 16 19 C -0.23 -3.14 5.89 -20.02 -0.12 -3.25 16 20 C 0.21 2.89 10.78 85.64 0.92 3.82 16 21 N -0.47 -10.19 10.45 -196.21 -2.05 -12.24 16 22 C 0.35 7.93 8.91 261.29 2.33 10.26 16 23 N -0.51 -12.07 11.31 -199.52 -2.26 -14.32 16 24 C 0.04 0.48 11.82 83.64 0.99 1.46 16 25 C -0.07 -0.74 11.76 83.12 0.98 0.24 16 26 N -0.41 -6.25 2.94 -355.65 -1.04 -7.29 16 27 C 0.20 2.47 10.65 84.03 0.90 3.36 16 28 C -0.17 -5.50 6.85 -9.88 -0.07 -5.57 16 29 H 0.12 3.60 8.14 -2.39 -0.02 3.58 16 30 C 0.17 7.57 5.00 86.53 0.43 8.00 16 31 H 0.25 15.80 6.41 -92.71 -0.59 15.20 16 32 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.08 1.43 7.94 -2.38 -0.02 1.42 16 35 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.42 3.67 6.48 -92.71 -0.60 3.07 16 37 H 0.21 1.37 6.48 -2.91 -0.02 1.35 16 38 H 0.22 1.19 8.06 -2.91 -0.02 1.17 16 39 H 0.24 0.03 8.06 -2.91 -0.02 0.01 16 40 H 0.21 1.56 7.68 -2.91 -0.02 1.54 16 41 H 0.03 1.52 7.47 -2.39 -0.02 1.50 16 42 H 0.01 0.62 7.66 -2.39 -0.02 0.61 16 Total: -1.00 -82.82 356.73 2.10 -80.72 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: 0.64 Total: 7.94 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 9.33 Total: 8.69 kcal Atomic # 7 Polarization: -127.73 SS G_CDS: -9.86 Total: -137.59 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: -0.07 Total: -12.89 kcal Atomic # 14 Polarization: 51.06 SS G_CDS: 2.06 Total: 53.12 kcal Total: -82.82 2.10 -80.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978499006.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.032 kcal (2) G-P(sol) polarization free energy of solvation -82.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds