Wall clock time and date at job start Fri Apr 10 2020 19:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36939 * 119.99564 * 2 1 4 4 H 1.07996 * 119.99756 * 200.39971 * 3 2 1 5 5 C 1.38815 * 119.99973 * 20.39213 * 3 2 1 6 6 N 1.31618 * 120.00030 * 14.97995 * 5 3 2 7 7 Si 1.86800 * 119.99777 * 194.97360 * 5 3 2 8 8 H 1.48501 * 109.47187 * 85.00756 * 7 5 3 9 9 H 1.48501 * 109.47056 * 205.00430 * 7 5 3 10 10 H 1.48500 * 109.47260 * 325.00685 * 7 5 3 11 11 C 1.46496 * 120.00289 * 179.97438 * 2 1 3 12 12 H 1.09001 * 109.67193 * 179.49983 * 11 2 1 13 13 C 1.53353 * 109.70285 * 58.98978 * 11 2 1 14 14 C 1.52912 * 108.67592 * 172.71784 * 13 11 2 15 15 N 1.45742 * 110.55418 * 50.53021 * 14 13 11 16 16 C 1.46497 * 117.93158 * 161.15972 * 15 14 13 17 17 C 1.50703 * 109.47483 * 270.25371 * 16 15 14 18 18 C 1.38239 * 119.99964 * 269.73265 * 17 16 15 19 19 C 1.38234 * 119.99409 * 179.74052 * 18 17 16 20 20 C 1.38234 * 120.00455 * 0.53006 * 19 18 17 21 21 C 1.38236 * 119.99750 * 359.74441 * 20 19 18 22 22 C 1.38234 * 120.00185 * 359.97438 * 21 20 19 23 23 C 1.33353 * 124.12011 * 341.43305 * 15 14 13 24 24 O 1.21278 * 118.24308 * 181.92644 * 23 15 14 25 25 C 1.50177 * 123.50713 * 1.64893 * 23 15 14 26 26 H 1.08998 * 109.47213 * 275.10013 * 1 2 3 27 27 H 1.08995 * 109.47269 * 35.10902 * 1 2 3 28 28 H 1.09002 * 109.46665 * 155.10705 * 1 2 3 29 29 H 0.97002 * 119.99554 * 179.97438 * 6 5 3 30 30 H 1.09006 * 109.59756 * 292.47237 * 13 11 2 31 31 H 1.08999 * 109.60149 * 52.95442 * 13 11 2 32 32 H 1.09001 * 109.30159 * 171.06085 * 14 13 11 33 33 H 1.09005 * 109.29941 * 290.43951 * 14 13 11 34 34 H 1.08999 * 109.47352 * 30.25849 * 16 15 14 35 35 H 1.08995 * 109.47059 * 150.25517 * 16 15 14 36 36 H 1.07997 * 119.99836 * 359.97438 * 18 17 16 37 37 H 1.08004 * 119.99678 * 180.29254 * 19 18 17 38 38 H 1.08003 * 120.00217 * 179.76820 * 20 19 18 39 39 H 1.08004 * 120.00010 * 180.02562 * 21 20 19 40 40 H 1.07999 * 120.00166 * 180.02562 * 22 21 20 41 41 H 1.08999 * 109.40288 * 102.82408 * 25 23 15 42 42 H 1.08991 * 109.40172 * 222.65746 * 25 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1788 1.2153 -0.3260 5 6 1.5207 2.3504 0.4189 6 7 0.3878 2.2833 1.0855 7 14 2.2824 4.0127 0.0366 8 1 1.8678 4.4466 -1.3217 9 1 1.8226 5.0096 1.0366 10 1 3.7624 3.9033 0.0911 11 6 2.1976 -1.2687 0.0006 12 1 3.2699 -1.0732 -0.0085 13 6 1.8120 -2.0889 -1.2365 14 6 2.7177 -3.3186 -1.3104 15 7 2.7321 -4.0211 -0.0335 16 6 3.1843 -5.4144 -0.0219 17 6 2.0065 -6.3269 -0.2482 18 6 1.2821 -6.8008 0.8296 19 6 0.1984 -7.6334 0.6215 20 6 -0.1542 -8.0009 -0.6636 21 6 0.5736 -7.5316 -1.7410 22 6 1.6538 -6.6943 -1.5334 23 6 2.3546 -3.4768 1.1239 24 8 2.4433 -4.1484 2.1299 25 6 1.8311 -2.0748 1.2491 26 1 -0.3633 0.0914 1.0236 27 1 -0.3633 0.8406 -0.5910 28 1 -0.3633 -0.9322 -0.4326 29 1 -0.0514 3.0970 1.3785 30 1 0.7719 -2.4050 -1.1559 31 1 1.9441 -1.4829 -2.1328 32 1 2.3528 -3.9886 -2.0890 33 1 3.7323 -3.0046 -1.5560 34 1 3.9180 -5.5650 -0.8138 35 1 3.6391 -5.6408 0.9425 36 1 1.5605 -6.5175 1.8338 37 1 -0.3704 -7.9999 1.4632 38 1 -0.9986 -8.6545 -0.8259 39 1 0.2979 -7.8184 -2.7451 40 1 2.2222 -6.3272 -2.3752 41 1 0.7469 -2.1015 1.3575 42 1 2.2712 -1.6010 2.1265 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172679670.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:05 Heat of formation + Delta-G solvation = 15.366672 kcal Electronic energy + Delta-G solvation = -23101.856976 eV Core-core repulsion = 19854.397505 eV Total energy + Delta-G solvation = -3247.459471 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.41927 -38.92727 -36.71252 -35.41595 -33.22526 -31.38668 -30.93864 -29.72663 -29.12402 -26.18440 -25.99953 -24.09975 -23.00809 -22.43795 -21.44938 -20.08218 -18.12216 -17.04988 -16.79098 -16.24641 -16.10494 -15.55596 -15.01680 -14.91178 -14.66432 -13.93819 -13.88543 -13.43966 -13.38344 -13.13819 -12.96410 -12.58118 -12.33938 -12.22261 -12.06981 -11.54160 -11.39633 -11.23226 -11.01202 -10.91232 -10.82110 -10.46823 -10.33726 -10.28671 -9.97952 -9.85572 -9.37512 -8.96333 -8.79919 -8.57807 -8.52376 -6.84147 -5.75499 -3.20380 1.23667 1.36339 3.01809 3.24274 3.37344 3.43509 3.44805 3.85124 4.44614 4.71366 4.75423 4.93885 4.97127 5.07471 5.09970 5.20177 5.26577 5.34642 5.43219 5.53401 5.59499 5.67827 5.75131 5.81256 5.93368 5.96706 6.02337 6.03125 6.26137 6.38037 6.38904 6.46582 6.57879 6.60920 6.70301 6.78829 6.82942 6.95376 7.34897 7.68823 7.72096 7.78498 8.34461 8.49823 9.19293 9.82456 10.30440 11.29293 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.030273 B = 0.003676 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.704528 B = 7616.114463 C = 7635.047441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.593 5.593 3 C -0.259 4.259 4 H 0.070 0.930 5 C 0.003 3.997 6 N -0.905 5.905 7 Si 0.905 3.095 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.179 3.821 12 H 0.069 0.931 13 C -0.149 4.149 14 C 0.118 3.882 15 N -0.600 5.600 16 C 0.145 3.855 17 C -0.101 4.101 18 C -0.095 4.095 19 C -0.125 4.125 20 C -0.121 4.121 21 C -0.126 4.126 22 C -0.108 4.108 23 C 0.525 3.475 24 O -0.565 6.565 25 C -0.147 4.147 26 H 0.030 0.970 27 H 0.044 0.956 28 H 0.000 1.000 29 H 0.253 0.747 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.129 0.871 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.095 0.905 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.046 -18.068 -6.550 19.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.314 5.314 3 C -0.389 4.389 4 H 0.088 0.912 5 C -0.195 4.195 6 N -0.550 5.550 7 Si 0.735 3.265 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.069 3.931 12 H 0.088 0.912 13 C -0.189 4.189 14 C -0.005 4.005 15 N -0.332 5.332 16 C 0.022 3.978 17 C -0.103 4.103 18 C -0.113 4.113 19 C -0.143 4.143 20 C -0.139 4.139 21 C -0.144 4.144 22 C -0.127 4.127 23 C 0.315 3.685 24 O -0.444 6.444 25 C -0.189 4.189 26 H 0.048 0.952 27 H 0.062 0.938 28 H 0.018 0.982 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.112 0.888 36 H 0.147 0.853 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.113 0.887 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.982 -18.172 -5.954 19.225 hybrid contribution 0.110 0.969 -0.225 1.001 sum 2.092 -17.203 -6.178 18.398 Atomic orbital electron populations 1.20789 0.82513 0.95562 0.99524 1.43985 1.01863 1.00023 1.85510 1.19235 0.97060 0.84852 1.37705 0.91174 1.24975 0.97842 0.98397 0.98331 1.70089 1.18824 1.26914 1.39162 0.86266 0.78651 0.83964 0.77599 1.21464 1.21775 1.20543 1.20382 0.96510 0.86215 0.89958 0.91242 1.22460 0.99238 0.95235 1.01951 1.21417 1.00413 0.94285 0.84362 1.47428 1.65649 1.11822 1.08327 1.20358 0.93271 0.80293 1.03866 1.20275 0.98502 0.98105 0.93382 1.21285 0.94686 0.95877 0.99498 1.21189 0.97428 0.98598 0.97051 1.21149 0.99673 1.00199 0.92901 1.21097 0.96075 0.98470 0.98788 1.21052 0.97454 0.97952 0.96244 1.20641 0.76054 0.89763 0.82065 1.90614 1.55256 1.63066 1.35504 1.22359 1.03019 0.90162 1.03324 0.95176 0.93762 0.98186 0.93683 0.91684 0.89753 0.91464 0.91872 0.90006 0.88769 0.85277 0.86211 0.86362 0.86255 0.86247 0.88730 0.88529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.82 7.82 59.85 0.47 4.28 16 2 N -0.59 -14.13 2.84 -173.23 -0.49 -14.62 16 3 C -0.26 -6.87 9.62 -15.06 -0.14 -7.01 16 4 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 5 C 0.00 0.09 5.06 -17.43 -0.09 0.00 16 6 N -0.91 -25.94 10.67 55.49 0.59 -25.35 16 7 Si 0.91 21.45 29.58 -169.99 -5.03 16.42 16 8 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 9 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 11 C 0.18 3.43 2.67 -67.71 -0.18 3.25 16 12 H 0.07 1.35 7.84 -51.93 -0.41 0.94 16 13 C -0.15 -2.31 5.12 -26.59 -0.14 -2.45 16 14 C 0.12 1.48 6.32 -4.50 -0.03 1.45 16 15 N -0.60 -8.57 2.80 -176.35 -0.49 -9.06 16 16 C 0.14 1.78 5.34 -5.19 -0.03 1.75 16 17 C -0.10 -1.25 5.45 -104.62 -0.57 -1.82 16 18 C -0.09 -1.25 9.56 -39.58 -0.38 -1.63 16 19 C -0.12 -1.44 10.05 -39.58 -0.40 -1.83 16 20 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 21 C -0.13 -1.28 10.05 -39.58 -0.40 -1.68 16 22 C -0.11 -1.16 9.48 -39.58 -0.38 -1.54 16 23 C 0.52 9.24 7.46 -11.87 -0.09 9.15 16 24 O -0.57 -11.20 15.33 5.56 0.09 -11.12 16 25 C -0.15 -2.79 5.49 -28.10 -0.15 -2.94 16 26 H 0.03 0.78 7.40 -51.93 -0.38 0.40 16 27 H 0.04 1.14 7.21 -51.93 -0.37 0.76 16 28 H 0.00 -0.01 6.56 -51.93 -0.34 -0.35 16 29 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.06 1.05 6.96 -51.93 -0.36 0.69 16 31 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 32 H 0.07 0.71 7.74 -51.93 -0.40 0.30 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.78 7.96 -51.93 -0.41 0.36 16 35 H 0.09 1.26 7.08 -51.93 -0.37 0.90 16 36 H 0.13 1.85 7.34 -52.49 -0.39 1.46 16 37 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 38 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 39 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 40 H 0.12 1.04 7.91 -52.49 -0.42 0.63 16 41 H 0.09 1.88 7.33 -51.93 -0.38 1.50 16 42 H 0.10 1.99 8.14 -51.93 -0.42 1.56 16 LS Contribution 338.12 15.07 5.10 5.10 Total: -1.00 -30.70 338.12 -9.45 -40.15 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -6.31 Total: 1.15 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -2.90 Total: -2.67 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: -0.39 Total: -49.03 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.70 -9.45 -40.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172679670.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.519 kcal (2) G-P(sol) polarization free energy of solvation -30.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds