Wall clock time and date at job start Fri Apr 10 2020 19:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36939 * 119.99564 * 2 1 4 4 H 1.07996 * 119.99756 * 200.39971 * 3 2 1 5 5 C 1.38815 * 119.99973 * 20.39213 * 3 2 1 6 6 N 1.31618 * 120.00030 * 14.97995 * 5 3 2 7 7 Si 1.86800 * 119.99777 * 194.97360 * 5 3 2 8 8 H 1.48501 * 109.47187 * 85.00756 * 7 5 3 9 9 H 1.48501 * 109.47056 * 205.00430 * 7 5 3 10 10 H 1.48500 * 109.47260 * 325.00685 * 7 5 3 11 11 C 1.46496 * 120.00289 * 179.97438 * 2 1 3 12 12 H 1.09001 * 109.67193 * 179.49983 * 11 2 1 13 13 C 1.53353 * 109.70285 * 58.98978 * 11 2 1 14 14 C 1.52912 * 108.67592 * 172.71784 * 13 11 2 15 15 N 1.45742 * 110.55418 * 50.53021 * 14 13 11 16 16 C 1.46497 * 117.93158 * 161.15972 * 15 14 13 17 17 C 1.50703 * 109.47483 * 270.25371 * 16 15 14 18 18 C 1.38239 * 119.99964 * 269.73265 * 17 16 15 19 19 C 1.38234 * 119.99409 * 179.74052 * 18 17 16 20 20 C 1.38234 * 120.00455 * 0.53006 * 19 18 17 21 21 C 1.38236 * 119.99750 * 359.74441 * 20 19 18 22 22 C 1.38234 * 120.00185 * 359.97438 * 21 20 19 23 23 C 1.33353 * 124.12011 * 341.43305 * 15 14 13 24 24 O 1.21278 * 118.24308 * 181.92644 * 23 15 14 25 25 C 1.50177 * 123.50713 * 1.64893 * 23 15 14 26 26 H 1.08998 * 109.47213 * 275.10013 * 1 2 3 27 27 H 1.08995 * 109.47269 * 35.10902 * 1 2 3 28 28 H 1.09002 * 109.46665 * 155.10705 * 1 2 3 29 29 H 0.97002 * 119.99554 * 179.97438 * 6 5 3 30 30 H 1.09006 * 109.59756 * 292.47237 * 13 11 2 31 31 H 1.08999 * 109.60149 * 52.95442 * 13 11 2 32 32 H 1.09001 * 109.30159 * 171.06085 * 14 13 11 33 33 H 1.09005 * 109.29941 * 290.43951 * 14 13 11 34 34 H 1.08999 * 109.47352 * 30.25849 * 16 15 14 35 35 H 1.08995 * 109.47059 * 150.25517 * 16 15 14 36 36 H 1.07997 * 119.99836 * 359.97438 * 18 17 16 37 37 H 1.08004 * 119.99678 * 180.29254 * 19 18 17 38 38 H 1.08003 * 120.00217 * 179.76820 * 20 19 18 39 39 H 1.08004 * 120.00010 * 180.02562 * 21 20 19 40 40 H 1.07999 * 120.00166 * 180.02562 * 22 21 20 41 41 H 1.08999 * 109.40288 * 102.82408 * 25 23 15 42 42 H 1.08991 * 109.40172 * 222.65746 * 25 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1788 1.2153 -0.3260 5 6 1.5207 2.3504 0.4189 6 7 0.3878 2.2833 1.0855 7 14 2.2824 4.0127 0.0366 8 1 1.8678 4.4466 -1.3217 9 1 1.8226 5.0096 1.0366 10 1 3.7624 3.9033 0.0911 11 6 2.1976 -1.2687 0.0006 12 1 3.2699 -1.0732 -0.0085 13 6 1.8120 -2.0889 -1.2365 14 6 2.7177 -3.3186 -1.3104 15 7 2.7321 -4.0211 -0.0335 16 6 3.1843 -5.4144 -0.0219 17 6 2.0065 -6.3269 -0.2482 18 6 1.2821 -6.8008 0.8296 19 6 0.1984 -7.6334 0.6215 20 6 -0.1542 -8.0009 -0.6636 21 6 0.5736 -7.5316 -1.7410 22 6 1.6538 -6.6943 -1.5334 23 6 2.3546 -3.4768 1.1239 24 8 2.4433 -4.1484 2.1299 25 6 1.8311 -2.0748 1.2491 26 1 -0.3633 0.0914 1.0236 27 1 -0.3633 0.8406 -0.5910 28 1 -0.3633 -0.9322 -0.4326 29 1 -0.0514 3.0970 1.3785 30 1 0.7719 -2.4050 -1.1559 31 1 1.9441 -1.4829 -2.1328 32 1 2.3528 -3.9886 -2.0890 33 1 3.7323 -3.0046 -1.5560 34 1 3.9180 -5.5650 -0.8138 35 1 3.6391 -5.6408 0.9425 36 1 1.5605 -6.5175 1.8338 37 1 -0.3704 -7.9999 1.4632 38 1 -0.9986 -8.6545 -0.8259 39 1 0.2979 -7.8184 -2.7451 40 1 2.2222 -6.3272 -2.3752 41 1 0.7469 -2.1015 1.3575 42 1 2.2712 -1.6010 2.1265 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172679670.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:05 Heat of formation + Delta-G solvation = -1.244651 kcal Electronic energy + Delta-G solvation = -23102.577297 eV Core-core repulsion = 19854.397505 eV Total energy + Delta-G solvation = -3248.179792 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.158 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.67325 -39.86260 -38.32191 -36.80117 -34.76471 -32.78456 -31.75947 -31.22228 -30.52248 -28.04878 -27.24963 -25.55312 -24.44779 -23.33105 -22.49655 -21.56740 -19.50265 -18.69066 -17.98712 -17.55607 -17.40272 -16.80172 -16.49316 -15.92252 -15.81619 -15.54453 -15.18935 -15.03595 -14.61839 -14.26643 -14.14927 -14.05059 -13.75061 -13.46916 -13.18691 -12.95995 -12.86314 -12.65333 -12.56308 -12.31577 -12.14366 -12.08411 -11.89030 -11.87702 -11.79277 -11.49651 -10.82537 -10.60677 -9.79621 -9.77010 -9.61241 -8.82161 -7.81298 -5.28082 0.38413 0.52570 1.49437 1.50160 1.58390 1.61991 2.10656 2.52019 2.97257 3.31643 3.46551 3.75194 3.88537 3.92055 4.00837 4.09118 4.18453 4.20020 4.30898 4.39047 4.44714 4.54445 4.62320 4.72863 4.76224 4.79571 4.84332 4.95821 4.98503 5.12587 5.18914 5.23965 5.30525 5.44983 5.49238 5.58318 5.63976 5.65146 5.72474 5.73195 6.14157 6.32306 6.45291 7.14518 7.16190 7.87193 8.30624 9.21922 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.030273 B = 0.003676 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.704528 B = 7616.114463 C = 7635.047441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.607 5.607 3 C -0.263 4.263 4 H 0.078 0.922 5 C -0.054 4.054 6 N -0.940 5.940 7 Si 0.968 3.032 8 H -0.284 1.284 9 H -0.300 1.300 10 H -0.268 1.268 11 C 0.176 3.824 12 H 0.068 0.932 13 C -0.137 4.137 14 C 0.120 3.880 15 N -0.590 5.590 16 C 0.145 3.855 17 C -0.115 4.115 18 C -0.121 4.121 19 C -0.138 4.138 20 C -0.124 4.124 21 C -0.127 4.127 22 C -0.107 4.107 23 C 0.526 3.474 24 O -0.595 6.595 25 C -0.139 4.139 26 H -0.002 1.002 27 H 0.018 0.982 28 H 0.031 0.969 29 H 0.247 0.753 30 H 0.059 0.941 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.121 0.879 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.128 0.872 38 H 0.142 0.858 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.081 0.919 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.060 -19.676 -9.728 22.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.329 5.329 3 C -0.393 4.393 4 H 0.095 0.905 5 C -0.249 4.249 6 N -0.587 5.587 7 Si 0.797 3.203 8 H -0.210 1.210 9 H -0.227 1.227 10 H -0.193 1.193 11 C 0.068 3.932 12 H 0.087 0.913 13 C -0.176 4.176 14 C -0.002 4.002 15 N -0.321 5.321 16 C 0.024 3.976 17 C -0.116 4.116 18 C -0.140 4.140 19 C -0.156 4.156 20 C -0.142 4.142 21 C -0.145 4.145 22 C -0.126 4.126 23 C 0.314 3.686 24 O -0.477 6.477 25 C -0.181 4.181 26 H 0.016 0.984 27 H 0.037 0.963 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.110 0.890 32 H 0.122 0.878 33 H 0.105 0.895 34 H 0.139 0.861 35 H 0.093 0.907 36 H 0.121 0.879 37 H 0.146 0.854 38 H 0.160 0.840 39 H 0.166 0.834 40 H 0.166 0.834 41 H 0.099 0.901 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.033 -19.825 -9.179 22.056 hybrid contribution -0.205 1.357 0.755 1.566 sum 2.828 -18.468 -8.424 20.495 Atomic orbital electron populations 1.20472 0.82886 0.95956 0.97318 1.44203 1.01954 1.01109 1.85605 1.19627 0.97399 0.85954 1.36317 0.90468 1.25741 0.98582 1.01713 0.98834 1.70264 1.20390 1.27131 1.40866 0.85265 0.78350 0.79737 0.76976 1.21040 1.22731 1.19306 1.20584 0.95971 0.84925 0.91674 0.91346 1.22272 0.99633 0.95997 0.99706 1.21604 1.01188 0.93430 0.83994 1.47435 1.63985 1.12826 1.07830 1.20522 0.94053 0.78694 1.04376 1.20309 0.98607 0.98689 0.94024 1.21269 0.96237 0.97584 0.98915 1.21380 0.97229 0.98624 0.98374 1.21490 1.00274 1.00063 0.92354 1.21508 0.95423 0.97561 1.00009 1.21360 0.97647 0.97523 0.96040 1.20234 0.76469 0.88853 0.82997 1.90609 1.56774 1.63416 1.36879 1.22143 1.02016 0.91580 1.02350 0.98408 0.96308 0.95020 0.94416 0.92256 0.88994 0.87840 0.89465 0.86148 0.90690 0.87865 0.85444 0.84035 0.83405 0.83399 0.90110 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.66 7.82 127.77 1.00 9.66 16 2 N -0.61 -29.09 2.84 -701.99 -1.99 -31.08 16 3 C -0.26 -13.96 9.62 84.03 0.81 -13.15 16 4 H 0.08 3.91 7.81 -2.91 -0.02 3.89 16 5 C -0.05 -2.97 5.06 84.86 0.43 -2.54 16 6 N -0.94 -55.52 10.67 21.65 0.23 -55.29 16 7 Si 0.97 44.44 29.58 68.60 2.03 46.47 16 8 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 9 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 10 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 11 C 0.18 6.65 2.67 45.13 0.12 6.77 16 12 H 0.07 2.59 7.84 -2.39 -0.02 2.57 16 13 C -0.14 -3.86 5.12 30.68 0.16 -3.70 16 14 C 0.12 2.48 6.32 86.49 0.55 3.02 16 15 N -0.59 -15.52 2.80 -831.04 -2.32 -17.84 16 16 C 0.15 3.22 5.34 85.63 0.46 3.68 16 17 C -0.12 -2.61 5.45 -19.86 -0.11 -2.72 16 18 C -0.12 -3.19 9.56 22.27 0.21 -2.98 16 19 C -0.14 -3.07 10.05 22.27 0.22 -2.85 16 20 C -0.12 -2.23 10.05 22.27 0.22 -2.01 16 21 C -0.13 -2.07 10.05 22.27 0.22 -1.85 16 22 C -0.11 -1.87 9.48 22.27 0.21 -1.66 16 23 C 0.53 18.49 7.46 87.71 0.65 19.15 16 24 O -0.59 -24.34 15.33 -3.02 -0.05 -24.39 16 25 C -0.14 -5.41 5.49 29.71 0.16 -5.24 16 26 H 0.00 -0.13 7.40 -2.39 -0.02 -0.15 16 27 H 0.02 0.97 7.21 -2.39 -0.02 0.95 16 28 H 0.03 1.30 6.56 -2.39 -0.02 1.28 16 29 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 30 H 0.06 1.76 6.96 -2.38 -0.02 1.74 16 31 H 0.09 2.52 8.14 -2.39 -0.02 2.51 16 32 H 0.10 1.53 7.74 -2.39 -0.02 1.51 16 33 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.12 1.74 7.96 -2.39 -0.02 1.72 16 35 H 0.07 1.98 7.08 -2.39 -0.02 1.96 16 36 H 0.10 3.17 7.34 -2.91 -0.02 3.15 16 37 H 0.13 2.47 8.06 -2.91 -0.02 2.44 16 38 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 39 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 40 H 0.15 1.68 7.91 -2.91 -0.02 1.66 16 41 H 0.08 3.34 7.33 -2.39 -0.02 3.32 16 42 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -69.25 338.12 4.22 -65.03 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 1.00 Total: 13.51 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 5.32 Total: 3.59 kcal Atomic # 7 Polarization: -100.13 SS G_CDS: -4.08 Total: -104.22 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.05 Total: -24.39 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -69.25 4.22 -65.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172679670.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.789 kcal (2) G-P(sol) polarization free energy of solvation -69.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds