Wall clock time and date at job start Fri Apr 10 2020 19:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 111.00159 * 2 1 4 4 C 1.46908 * 110.99475 * 123.94960 * 2 1 3 5 5 H 1.09002 * 112.84933 * 311.19681 * 4 2 1 6 6 C 1.53777 * 113.69051 * 82.46598 * 4 2 1 7 7 C 1.53780 * 87.08307 * 139.99251 * 6 4 2 8 8 H 1.08993 * 113.69630 * 89.12276 * 7 6 4 9 9 C 1.50697 * 113.61189 * 220.02250 * 7 6 4 10 10 O 1.21283 * 120.00600 * 97.49630 * 9 7 6 11 11 N 1.34780 * 119.99944 * 277.48579 * 9 7 6 12 12 C 1.39934 * 120.00096 * 185.09629 * 11 9 7 13 13 C 1.39289 * 119.95126 * 33.30610 * 12 11 9 14 14 C 1.38480 * 120.43083 * 180.25412 * 13 12 11 15 15 C 1.37684 * 120.32139 * 359.45035 * 14 13 12 16 16 C 1.40741 * 119.88509 * 0.27228 * 15 14 13 17 17 C 1.41410 * 120.21156 * 179.97438 * 16 15 14 18 18 H 1.07997 * 119.99907 * 29.19848 * 17 16 15 19 19 C 1.39929 * 120.00309 * 209.20395 * 17 16 15 20 20 N 1.30835 * 119.99799 * 15.61126 * 19 17 16 21 21 Si 1.86801 * 119.99991 * 195.61954 * 19 17 16 22 22 H 1.48495 * 109.47369 * 59.99622 * 21 19 17 23 23 H 1.48508 * 109.46832 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46810 * 299.99126 * 21 19 17 25 25 C 1.38245 * 119.94762 * 213.00921 * 12 11 9 26 26 C 1.53777 * 113.61146 * 180.02562 * 4 2 1 27 27 H 1.08995 * 109.47420 * 296.05446 * 1 2 3 28 28 H 1.09002 * 109.46763 * 56.05350 * 1 2 3 29 29 H 1.09002 * 109.47563 * 176.04897 * 1 2 3 30 30 H 1.08999 * 109.46732 * 183.95289 * 3 2 1 31 31 H 1.09004 * 109.46691 * 303.94682 * 3 2 1 32 32 H 1.08995 * 109.47510 * 63.94871 * 3 2 1 33 33 H 1.09002 * 113.61779 * 25.43678 * 6 4 2 34 34 H 1.09004 * 113.61366 * 254.53830 * 6 4 2 35 35 H 0.96997 * 119.99749 * 5.10705 * 11 9 7 36 36 H 1.08004 * 119.78366 * 359.97438 * 13 12 11 37 37 H 1.08001 * 119.83829 * 179.72320 * 14 13 12 38 38 H 1.08004 * 120.05708 * 180.30205 * 15 14 13 39 39 H 0.97002 * 119.99901 * 180.02562 * 20 19 17 40 40 H 1.08002 * 120.15917 * 0.04601 * 25 12 11 41 41 H 1.08996 * 113.61675 * 105.38697 * 26 4 2 42 42 H 1.08998 * 113.69216 * 334.49396 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 1 1.5293 -0.4920 2.0843 6 6 2.0444 -2.2831 0.8915 7 6 3.3995 -2.2780 1.6184 8 1 3.3189 -2.4175 2.6963 9 6 4.4268 -3.1815 0.9865 10 8 5.2517 -2.7227 0.2249 11 7 4.4291 -4.4996 1.2678 12 6 5.4457 -5.3203 0.7667 13 6 6.7338 -4.8141 0.6090 14 6 7.7461 -5.6159 0.1091 15 6 7.4927 -6.9267 -0.2273 16 6 6.1974 -7.4537 -0.0679 17 6 5.9293 -8.7990 -0.4117 18 1 6.7112 -9.5406 -0.3407 19 6 4.6510 -9.1693 -0.8439 20 7 3.7975 -8.2528 -1.2226 21 14 4.1630 -10.9721 -0.8800 22 1 4.2564 -11.5377 0.4898 23 1 2.7677 -11.0974 -1.3727 24 1 5.0767 -11.7141 -1.7854 25 6 5.1716 -6.6340 0.4347 26 6 3.5315 -0.8046 1.1963 27 1 -0.3634 0.4513 0.9232 28 1 -0.3633 0.5739 -0.8525 29 1 -0.3634 -1.0252 -0.0708 30 1 3.0828 1.3431 -0.0708 31 1 1.5899 1.9162 -0.8526 32 1 1.7044 1.8724 0.9232 33 1 2.1150 -2.5524 -0.1624 34 1 1.2678 -2.8365 1.4196 35 1 3.7259 -4.8794 1.8175 36 1 6.9432 -3.7883 0.8741 37 1 8.7404 -5.2122 -0.0135 38 1 8.2866 -7.5497 -0.6122 39 1 2.9112 -8.5094 -1.5219 40 1 4.1741 -7.0286 0.5604 41 1 3.9552 -0.1649 1.9704 42 1 4.0103 -0.6695 0.2265 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183374771.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:10 Heat of formation + Delta-G solvation = 8.581270 kcal Electronic energy + Delta-G solvation = -22335.574263 eV Core-core repulsion = 19087.820555 eV Total energy + Delta-G solvation = -3247.753708 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.36399 -38.64682 -37.03735 -35.10104 -34.17128 -33.19607 -29.54149 -28.72078 -28.00824 -26.34794 -25.34671 -25.18269 -23.29480 -21.27343 -20.82748 -19.63567 -19.23976 -17.35308 -17.22890 -15.84868 -15.62308 -15.46770 -14.98595 -14.76447 -14.66366 -14.51164 -13.96189 -13.55749 -12.99976 -12.75350 -12.62451 -12.42250 -12.33708 -12.18852 -11.83510 -11.77145 -11.64541 -11.19965 -11.17718 -11.05777 -10.86842 -10.66720 -10.46589 -10.34649 -9.97033 -9.86129 -9.36059 -9.10868 -8.83255 -8.52886 -7.32043 -6.90948 -6.67337 -4.34352 2.61784 2.89520 3.08573 3.11745 3.22263 3.38139 3.65028 3.94094 3.97192 4.40181 4.51999 4.66106 4.73333 4.85295 4.97621 5.15748 5.29671 5.34182 5.37178 5.42850 5.64583 5.69624 5.70836 5.74177 5.76057 5.98261 6.06226 6.27245 6.30593 6.66529 6.73700 6.83803 6.93429 6.97023 7.08978 7.10707 7.27475 7.65752 7.73926 7.95560 8.04830 8.20646 8.37204 8.60858 8.83158 8.92433 8.99705 10.26554 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.020192 B = 0.003653 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.345547 B = 7662.460752 C = 8703.884992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.535 5.535 3 C 0.024 3.976 4 C 0.052 3.948 5 H 0.067 0.933 6 C -0.107 4.107 7 C -0.137 4.137 8 H 0.110 0.890 9 C 0.518 3.482 10 O -0.523 6.523 11 N -0.664 5.664 12 C 0.145 3.855 13 C -0.225 4.225 14 C -0.088 4.088 15 C -0.226 4.226 16 C 0.123 3.877 17 C -0.470 4.470 18 H 0.077 0.923 19 C 0.077 3.923 20 N -0.800 5.800 21 Si 0.907 3.093 22 H -0.265 1.265 23 H -0.280 1.280 24 H -0.266 1.266 25 C -0.179 4.179 26 C -0.105 4.105 27 H 0.023 0.977 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.022 0.978 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.400 0.600 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.279 0.721 40 H 0.117 0.883 41 H 0.068 0.932 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.263 12.510 6.332 16.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.259 5.259 3 C -0.124 4.124 4 C -0.057 4.057 5 H 0.085 0.915 6 C -0.146 4.146 7 C -0.159 4.159 8 H 0.128 0.872 9 C 0.305 3.695 10 O -0.398 6.398 11 N -0.307 5.307 12 C 0.053 3.947 13 C -0.246 4.246 14 C -0.106 4.106 15 C -0.246 4.246 16 C 0.120 3.880 17 C -0.500 4.500 18 H 0.095 0.905 19 C -0.140 4.140 20 N -0.426 5.426 21 Si 0.731 3.269 22 H -0.190 1.190 23 H -0.205 1.205 24 H -0.191 1.191 25 C -0.200 4.200 26 C -0.143 4.143 27 H 0.041 0.959 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.041 0.959 33 H 0.116 0.884 34 H 0.091 0.909 35 H 0.234 0.766 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.090 0.910 40 H 0.135 0.865 41 H 0.087 0.913 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.771 12.686 5.263 15.781 hybrid contribution -1.043 -0.628 0.907 1.518 sum -8.815 12.058 6.170 16.161 Atomic orbital electron populations 1.22369 0.87479 1.02384 1.00149 1.62164 1.07743 1.13832 1.42136 1.22360 1.01390 0.88599 1.00070 1.23167 0.96045 0.94501 0.91959 0.91502 1.22921 0.94639 0.94921 1.02087 1.22603 0.95989 0.96438 1.00902 0.87167 1.20284 0.85210 0.82477 0.81560 1.90691 1.39223 1.75049 1.34875 1.43484 1.27586 1.07768 1.51836 1.17629 0.86899 0.90679 0.99470 1.20322 0.91763 0.99561 1.12937 1.20433 0.96786 0.94194 0.99231 1.21072 0.97920 0.95009 1.10582 1.17346 0.90240 0.92811 0.87576 1.19459 0.95997 0.94218 1.40322 0.90457 1.25852 0.96056 0.99413 0.92660 1.69827 1.06596 1.35141 1.31028 0.86400 0.77991 0.82863 0.79600 1.18952 1.20469 1.19093 1.20968 1.00668 0.92384 1.06023 1.22924 0.94331 0.93609 1.03434 0.95885 0.91483 0.91216 0.90919 0.91525 0.95901 0.88410 0.90888 0.76643 0.88018 0.89045 0.88847 0.91031 0.86500 0.91300 0.87630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.56 60.07 0.57 0.79 16 2 N -0.53 -5.84 4.98 -242.19 -1.21 -7.04 16 3 C 0.02 0.22 9.33 60.06 0.56 0.78 16 4 C 0.05 0.55 3.21 -66.90 -0.22 0.33 16 5 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 6 C -0.11 -1.27 7.33 -25.92 -0.19 -1.46 16 7 C -0.14 -1.75 4.15 -90.94 -0.38 -2.13 16 8 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 9 C 0.52 9.44 7.09 -10.98 -0.08 9.36 16 10 O -0.52 -11.65 13.56 5.55 0.08 -11.58 16 11 N -0.66 -12.66 5.34 -9.91 -0.05 -12.71 16 12 C 0.15 3.44 6.27 -83.77 -0.53 2.92 16 13 C -0.22 -5.45 8.66 -39.10 -0.34 -5.79 16 14 C -0.09 -2.09 10.02 -39.69 -0.40 -2.49 16 15 C -0.23 -5.71 9.79 -38.84 -0.38 -6.09 16 16 C 0.12 3.32 5.52 -106.85 -0.59 2.73 16 17 C -0.47 -12.51 9.04 -37.74 -0.34 -12.85 16 18 H 0.08 1.98 7.89 -52.49 -0.41 1.56 16 19 C 0.08 1.94 5.15 -17.34 -0.09 1.85 16 20 N -0.80 -20.84 11.15 55.55 0.62 -20.23 16 21 Si 0.91 18.71 29.59 -169.99 -5.03 13.68 16 22 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 23 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 24 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 25 C -0.18 -4.60 8.57 -38.69 -0.33 -4.93 16 26 C -0.11 -1.27 5.93 -25.90 -0.15 -1.43 16 27 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 29 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 30 H 0.07 0.70 7.05 -51.93 -0.37 0.34 16 31 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 32 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.10 1.40 8.09 -51.93 -0.42 0.98 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.40 6.28 8.81 -40.82 -0.36 5.92 16 36 H 0.10 2.43 6.39 -52.48 -0.34 2.10 16 37 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 38 H 0.09 2.21 8.06 -52.48 -0.42 1.79 16 39 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 40 H 0.12 3.03 6.44 -52.49 -0.34 2.69 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.11 1.56 7.18 -51.93 -0.37 1.19 16 LS Contribution 345.01 15.07 5.20 5.20 Total: -1.00 -30.82 345.01 -9.65 -40.48 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -6.39 Total: 10.60 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -2.87 Total: -18.40 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: -0.64 Total: -39.98 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.08 Total: -11.58 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.82 -9.65 -40.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183374771.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.059 kcal (2) G-P(sol) polarization free energy of solvation -30.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds