Wall clock time and date at job start Fri Apr 10 2020 19:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 111.00159 * 2 1 4 4 C 1.46908 * 110.99475 * 123.94960 * 2 1 3 5 5 H 1.09002 * 112.84933 * 311.19681 * 4 2 1 6 6 C 1.53777 * 113.69051 * 82.46598 * 4 2 1 7 7 C 1.53780 * 87.08307 * 139.99251 * 6 4 2 8 8 H 1.08993 * 113.69630 * 89.12276 * 7 6 4 9 9 C 1.50697 * 113.61189 * 220.02250 * 7 6 4 10 10 O 1.21283 * 120.00600 * 97.49630 * 9 7 6 11 11 N 1.34780 * 119.99944 * 277.48579 * 9 7 6 12 12 C 1.39934 * 120.00096 * 185.09629 * 11 9 7 13 13 C 1.39289 * 119.95126 * 33.30610 * 12 11 9 14 14 C 1.38480 * 120.43083 * 180.25412 * 13 12 11 15 15 C 1.37684 * 120.32139 * 359.45035 * 14 13 12 16 16 C 1.40741 * 119.88509 * 0.27228 * 15 14 13 17 17 C 1.41410 * 120.21156 * 179.97438 * 16 15 14 18 18 H 1.07997 * 119.99907 * 29.19848 * 17 16 15 19 19 C 1.39929 * 120.00309 * 209.20395 * 17 16 15 20 20 N 1.30835 * 119.99799 * 15.61126 * 19 17 16 21 21 Si 1.86801 * 119.99991 * 195.61954 * 19 17 16 22 22 H 1.48495 * 109.47369 * 59.99622 * 21 19 17 23 23 H 1.48508 * 109.46832 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46810 * 299.99126 * 21 19 17 25 25 C 1.38245 * 119.94762 * 213.00921 * 12 11 9 26 26 C 1.53777 * 113.61146 * 180.02562 * 4 2 1 27 27 H 1.08995 * 109.47420 * 296.05446 * 1 2 3 28 28 H 1.09002 * 109.46763 * 56.05350 * 1 2 3 29 29 H 1.09002 * 109.47563 * 176.04897 * 1 2 3 30 30 H 1.08999 * 109.46732 * 183.95289 * 3 2 1 31 31 H 1.09004 * 109.46691 * 303.94682 * 3 2 1 32 32 H 1.08995 * 109.47510 * 63.94871 * 3 2 1 33 33 H 1.09002 * 113.61779 * 25.43678 * 6 4 2 34 34 H 1.09004 * 113.61366 * 254.53830 * 6 4 2 35 35 H 0.96997 * 119.99749 * 5.10705 * 11 9 7 36 36 H 1.08004 * 119.78366 * 359.97438 * 13 12 11 37 37 H 1.08001 * 119.83829 * 179.72320 * 14 13 12 38 38 H 1.08004 * 120.05708 * 180.30205 * 15 14 13 39 39 H 0.97002 * 119.99901 * 180.02562 * 20 19 17 40 40 H 1.08002 * 120.15917 * 0.04601 * 25 12 11 41 41 H 1.08996 * 113.61675 * 105.38697 * 26 4 2 42 42 H 1.08998 * 113.69216 * 334.49396 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 1 1.5293 -0.4920 2.0843 6 6 2.0444 -2.2831 0.8915 7 6 3.3995 -2.2780 1.6184 8 1 3.3189 -2.4175 2.6963 9 6 4.4268 -3.1815 0.9865 10 8 5.2517 -2.7227 0.2249 11 7 4.4291 -4.4996 1.2678 12 6 5.4457 -5.3203 0.7667 13 6 6.7338 -4.8141 0.6090 14 6 7.7461 -5.6159 0.1091 15 6 7.4927 -6.9267 -0.2273 16 6 6.1974 -7.4537 -0.0679 17 6 5.9293 -8.7990 -0.4117 18 1 6.7112 -9.5406 -0.3407 19 6 4.6510 -9.1693 -0.8439 20 7 3.7975 -8.2528 -1.2226 21 14 4.1630 -10.9721 -0.8800 22 1 4.2564 -11.5377 0.4898 23 1 2.7677 -11.0974 -1.3727 24 1 5.0767 -11.7141 -1.7854 25 6 5.1716 -6.6340 0.4347 26 6 3.5315 -0.8046 1.1963 27 1 -0.3634 0.4513 0.9232 28 1 -0.3633 0.5739 -0.8525 29 1 -0.3634 -1.0252 -0.0708 30 1 3.0828 1.3431 -0.0708 31 1 1.5899 1.9162 -0.8526 32 1 1.7044 1.8724 0.9232 33 1 2.1150 -2.5524 -0.1624 34 1 1.2678 -2.8365 1.4196 35 1 3.7259 -4.8794 1.8175 36 1 6.9432 -3.7883 0.8741 37 1 8.7404 -5.2122 -0.0135 38 1 8.2866 -7.5497 -0.6122 39 1 2.9112 -8.5094 -1.5219 40 1 4.1741 -7.0286 0.5604 41 1 3.9552 -0.1649 1.9704 42 1 4.0103 -0.6695 0.2265 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183374771.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:10 Heat of formation + Delta-G solvation = -10.727578 kcal Electronic energy + Delta-G solvation = -22336.411558 eV Core-core repulsion = 19087.820555 eV Total energy + Delta-G solvation = -3248.591003 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.65939 -39.98603 -38.70831 -36.09764 -35.87448 -35.04221 -31.49300 -30.47032 -28.73982 -27.49884 -27.10299 -26.26493 -24.36951 -23.12531 -22.38210 -21.11647 -20.31805 -19.21377 -18.56433 -17.47666 -16.85846 -16.65148 -16.54105 -16.29074 -15.93047 -15.55825 -15.28306 -14.87713 -14.72104 -14.39793 -14.15694 -13.64037 -13.50733 -13.20178 -13.08196 -12.97160 -12.79136 -12.69751 -12.60470 -12.51057 -12.19892 -12.14169 -11.83370 -11.75150 -11.70123 -11.25200 -11.17395 -10.86016 -10.53157 -9.30181 -9.26748 -8.77766 -8.56898 -6.36307 0.82438 1.04104 1.40801 1.50862 1.53746 1.79003 2.23496 2.28130 2.77841 3.06970 3.45836 3.53665 3.69102 3.74358 3.90615 4.12141 4.30083 4.47190 4.50288 4.52220 4.67112 4.68715 4.72000 4.78525 4.84081 4.86265 4.97144 5.02888 5.05484 5.12401 5.13587 5.14643 5.23515 5.32791 5.37705 5.80852 5.86334 6.02408 6.07652 6.11817 6.19817 6.34980 6.59106 6.76822 6.94854 6.98536 7.33565 8.38073 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.020192 B = 0.003653 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.345547 B = 7662.460752 C = 8703.884992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.562 5.562 3 C 0.025 3.975 4 C 0.066 3.934 5 H 0.094 0.906 6 C -0.106 4.106 7 C -0.127 4.127 8 H 0.149 0.851 9 C 0.514 3.486 10 O -0.568 6.568 11 N -0.659 5.659 12 C 0.149 3.851 13 C -0.238 4.238 14 C -0.087 4.087 15 C -0.247 4.247 16 C 0.095 3.905 17 C -0.503 4.503 18 H 0.078 0.922 19 C 0.037 3.963 20 N -0.830 5.830 21 Si 0.983 3.017 22 H -0.258 1.258 23 H -0.269 1.269 24 H -0.263 1.263 25 C -0.198 4.198 26 C -0.107 4.107 27 H 0.037 0.963 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.036 0.964 33 H 0.065 0.935 34 H 0.098 0.902 35 H 0.416 0.584 36 H 0.104 0.896 37 H 0.119 0.881 38 H 0.102 0.898 39 H 0.287 0.713 40 H 0.109 0.891 41 H 0.088 0.912 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.923 12.870 7.657 17.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.286 5.286 3 C -0.123 4.123 4 C -0.042 4.042 5 H 0.112 0.888 6 C -0.145 4.145 7 C -0.149 4.149 8 H 0.167 0.833 9 C 0.304 3.696 10 O -0.446 6.446 11 N -0.304 5.304 12 C 0.056 3.944 13 C -0.259 4.259 14 C -0.105 4.105 15 C -0.266 4.266 16 C 0.092 3.908 17 C -0.533 4.533 18 H 0.096 0.904 19 C -0.177 4.177 20 N -0.456 5.456 21 Si 0.804 3.196 22 H -0.182 1.182 23 H -0.193 1.193 24 H -0.187 1.187 25 C -0.220 4.220 26 C -0.145 4.145 27 H 0.055 0.945 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.117 0.883 35 H 0.253 0.747 36 H 0.122 0.878 37 H 0.137 0.863 38 H 0.120 0.880 39 H 0.097 0.903 40 H 0.127 0.873 41 H 0.107 0.893 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.453 13.069 6.610 17.431 hybrid contribution -0.503 -0.639 0.454 0.931 sum -9.956 12.429 7.064 17.421 Atomic orbital electron populations 1.22384 0.86247 1.02493 1.01124 1.62116 1.09054 1.14774 1.42669 1.22351 1.00764 0.88051 1.01096 1.23084 0.94730 0.93375 0.93027 0.88846 1.22885 0.94615 0.96621 1.00330 1.22746 0.94392 0.95156 1.02560 0.83328 1.21333 0.85445 0.82229 0.80642 1.90666 1.41389 1.75685 1.36881 1.43513 1.27086 1.07978 1.51792 1.17723 0.87963 0.90596 0.98139 1.20508 0.92255 0.99686 1.13430 1.20751 0.98109 0.93654 0.98014 1.21254 0.97856 0.95894 1.11638 1.17764 0.91309 0.93640 0.88115 1.19742 0.97268 0.94438 1.41836 0.90428 1.26722 0.95334 1.04210 0.91443 1.69889 1.07152 1.37480 1.31127 0.85241 0.77932 0.76587 0.79832 1.18230 1.19313 1.18696 1.20918 1.00163 0.93345 1.07529 1.22882 0.95768 0.93464 1.02352 0.94494 0.90969 0.91503 0.91940 0.90884 0.94511 0.91644 0.88312 0.74707 0.87835 0.86264 0.88014 0.90269 0.87339 0.89325 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.56 127.69 1.22 1.62 16 2 N -0.56 -11.30 4.98 -920.15 -4.58 -15.89 16 3 C 0.03 0.43 9.33 127.69 1.19 1.62 16 4 C 0.07 1.24 3.21 45.44 0.15 1.38 16 5 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 6 C -0.11 -2.31 7.33 31.12 0.23 -2.08 16 7 C -0.13 -2.99 4.15 -11.00 -0.05 -3.04 16 8 H 0.15 2.42 8.14 -2.39 -0.02 2.40 16 9 C 0.51 18.59 7.09 87.66 0.62 19.21 16 10 O -0.57 -25.80 13.56 -3.04 -0.04 -25.84 16 11 N -0.66 -25.04 5.34 -303.65 -1.62 -26.66 16 12 C 0.15 7.20 6.27 38.10 0.24 7.44 16 13 C -0.24 -11.66 8.66 22.58 0.20 -11.47 16 14 C -0.09 -4.17 10.02 22.20 0.22 -3.94 16 15 C -0.25 -12.74 9.79 22.75 0.22 -12.52 16 16 C 0.09 5.24 5.52 -21.31 -0.12 5.12 16 17 C -0.50 -27.39 9.04 23.46 0.21 -27.18 16 18 H 0.08 4.06 7.89 -2.91 -0.02 4.03 16 19 C 0.04 1.88 5.15 85.25 0.44 2.32 16 20 N -0.83 -43.78 11.15 21.82 0.24 -43.53 16 21 Si 0.98 38.12 29.59 68.60 2.03 40.15 16 22 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 23 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 24 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 25 C -0.20 -10.45 8.57 22.85 0.20 -10.26 16 26 C -0.11 -2.42 5.93 31.13 0.18 -2.24 16 27 H 0.04 0.47 8.14 -2.39 -0.02 0.46 16 28 H 0.07 1.03 8.12 -2.39 -0.02 1.01 16 29 H 0.07 1.07 8.10 -2.39 -0.02 1.05 16 30 H 0.06 1.17 7.05 -2.39 -0.02 1.15 16 31 H 0.07 1.11 8.12 -2.38 -0.02 1.09 16 32 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.06 1.88 8.09 -2.39 -0.02 1.86 16 34 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.42 12.74 8.81 -92.71 -0.82 11.92 16 36 H 0.10 5.01 6.39 -2.91 -0.02 4.99 16 37 H 0.12 4.93 8.06 -2.91 -0.02 4.90 16 38 H 0.10 4.92 8.06 -2.91 -0.02 4.90 16 39 H 0.29 13.71 8.30 -92.71 -0.77 12.94 16 40 H 0.11 5.80 6.44 -2.91 -0.02 5.78 16 41 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.07 2.18 7.18 -2.39 -0.02 2.16 16 Total: -1.00 -68.82 345.01 1.38 -67.43 By element: Atomic # 1 Polarization: 38.14 SS G_CDS: 0.20 Total: 38.34 kcal Atomic # 6 Polarization: -39.16 SS G_CDS: 5.15 Total: -34.01 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -5.96 Total: -86.08 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.04 Total: -25.84 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 2.03 Total: 40.15 kcal Total: -68.82 1.38 -67.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183374771.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.707 kcal (2) G-P(sol) polarization free energy of solvation -68.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds