Wall clock time and date at job start Fri Apr 10 2020 19:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 120.00124 * 2 1 4 4 C 1.50699 * 109.46948 * 269.99640 * 3 2 1 5 5 H 1.08002 * 119.99863 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00212 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99551 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00268 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.46972 * 90.00607 * 8 6 4 10 10 H 1.48499 * 109.46970 * 209.99961 * 8 6 4 11 11 H 1.48493 * 109.47119 * 330.00226 * 8 6 4 12 12 C 1.39677 * 119.99736 * 179.97438 * 2 1 3 13 13 C 1.38910 * 120.07673 * 359.97438 * 12 2 1 14 14 C 1.38101 * 119.92622 * 179.97438 * 13 12 2 15 15 C 1.38282 * 120.07243 * 0.02562 * 14 13 12 16 16 C 1.50710 * 119.92375 * 179.97438 * 15 14 13 17 17 N 1.46900 * 109.46730 * 90.00288 * 16 15 14 18 18 C 1.48624 * 110.99623 * 170.00204 * 17 16 15 19 19 C 1.54922 * 102.81649 * 158.55636 * 18 17 16 20 20 C 1.52177 * 103.31507 * 322.80808 * 19 18 17 21 21 O 1.20759 * 127.08918 * 202.18962 * 20 19 18 22 22 C 1.47901 * 110.99729 * 286.80518 * 17 16 15 23 23 C 1.38285 * 120.15345 * 0.27632 * 15 14 13 24 24 C 1.38105 * 120.07161 * 359.44184 * 23 15 14 25 25 H 1.09000 * 109.47574 * 270.00274 * 1 2 3 26 26 H 1.09002 * 109.47167 * 30.00458 * 1 2 3 27 27 H 1.08997 * 109.47352 * 150.00063 * 1 2 3 28 28 H 1.08997 * 109.46702 * 29.99777 * 3 2 1 29 29 H 1.08994 * 109.46941 * 149.99995 * 3 2 1 30 30 H 0.96999 * 119.99841 * 179.97438 * 7 6 4 31 31 H 1.08007 * 120.03481 * 359.96223 * 13 12 2 32 32 H 1.08001 * 119.96495 * 180.02562 * 14 13 12 33 33 H 1.08996 * 109.47219 * 330.00319 * 16 15 14 34 34 H 1.09000 * 109.46970 * 210.00430 * 16 15 14 35 35 H 1.08997 * 110.74477 * 40.22633 * 18 17 16 36 36 H 1.08996 * 110.90129 * 276.95651 * 18 17 16 37 37 H 1.09002 * 110.67967 * 81.31462 * 19 18 17 38 38 H 1.08999 * 110.68063 * 204.31175 * 19 18 17 39 39 H 1.09003 * 109.87037 * 334.37447 * 22 17 16 40 40 H 1.08998 * 109.86661 * 95.34595 * 22 17 16 41 41 H 1.07999 * 119.96309 * 179.70335 * 23 15 14 42 42 H 1.07994 * 120.03692 * 180.27280 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0975 1.0960 -2.2417 6 6 3.1261 2.8778 -1.6729 7 7 3.5534 3.6180 -0.6732 8 14 3.4369 3.4173 -3.4340 9 1 2.3066 4.2601 -3.9003 10 1 4.6970 4.2006 -3.4967 11 1 3.5542 2.2204 -4.3049 12 6 2.1633 -1.2097 0.0005 13 6 1.4703 -2.4136 0.0016 14 6 2.1639 -3.6078 0.0016 15 6 3.5467 -3.6059 0.0011 16 6 4.3003 -4.9111 0.0017 17 7 4.5446 -5.3360 -1.3832 18 6 5.4861 -6.4851 -1.4294 19 6 5.1866 -7.1194 -2.8108 20 6 3.6794 -6.9614 -2.9496 21 8 2.9415 -7.6066 -3.6549 22 6 3.2997 -5.8243 -2.0151 23 6 4.2398 -2.4093 0.0063 24 6 3.5524 -1.2115 0.0004 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3634 -0.8900 -0.5138 28 1 1.6084 2.0283 0.5138 29 1 3.1499 1.1383 0.5138 30 1 4.0302 4.4439 -0.8505 31 1 0.3903 -2.4156 0.0027 32 1 1.6258 -4.5441 0.0020 33 1 3.7114 -5.6704 0.5162 34 1 5.2529 -4.7805 0.5151 35 1 5.2737 -7.1908 -0.6264 36 1 6.5197 -6.1432 -1.3776 37 1 5.7049 -6.5790 -3.6030 38 1 5.4655 -8.1730 -2.8191 39 1 2.6138 -6.1880 -1.2500 40 1 2.8307 -5.0190 -2.5804 41 1 5.3198 -2.4115 0.0107 42 1 4.0943 -0.2773 0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231818364.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:28 Heat of formation + Delta-G solvation = 8.356607 kcal Electronic energy + Delta-G solvation = -22259.891694 eV Core-core repulsion = 19012.128243 eV Total energy + Delta-G solvation = -3247.763450 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.16072 -38.99756 -37.53228 -35.63169 -32.82226 -31.88000 -30.48688 -29.20546 -28.36528 -27.77727 -25.68918 -24.11971 -22.38283 -21.72808 -21.41766 -19.95930 -19.57571 -16.72681 -16.57113 -16.50430 -16.36497 -15.25363 -15.07820 -14.84002 -14.43037 -14.07188 -14.00271 -13.84619 -13.73583 -13.31573 -12.98625 -12.80364 -12.75253 -12.16970 -12.12963 -11.80405 -11.66824 -11.54055 -11.40680 -11.25531 -10.94893 -10.72545 -10.70048 -10.26680 -9.91262 -9.79296 -9.74597 -8.90121 -8.62131 -8.51378 -8.29065 -6.48699 -6.03014 -4.18289 1.63915 2.08860 2.16820 3.26151 3.33132 3.38136 3.73892 3.87299 4.13472 4.32288 4.40752 4.47782 4.63916 4.82101 5.05673 5.17983 5.20684 5.22261 5.36200 5.47469 5.49883 5.53260 5.63553 5.65086 5.70939 5.80742 6.00734 6.06276 6.25123 6.33467 6.41363 6.51161 6.60843 6.76154 6.94058 7.01058 7.16679 7.21378 7.25033 7.35027 7.57814 7.80285 8.14307 8.24902 8.46706 8.90766 9.48752 10.94789 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.017310 B = 0.003686 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.194994 B = 7593.804521 C = 8154.563533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.615 5.615 3 C 0.249 3.751 4 C -0.532 4.532 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.243 3.757 13 C -0.222 4.222 14 C -0.067 4.067 15 C -0.171 4.171 16 C 0.102 3.898 17 N -0.499 5.499 18 C 0.034 3.966 19 C -0.184 4.184 20 C 0.366 3.634 21 O -0.443 6.443 22 C -0.020 4.020 23 C -0.050 4.050 24 C -0.188 4.188 25 H 0.036 0.964 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.030 0.970 29 H 0.036 0.964 30 H 0.264 0.736 31 H 0.113 0.887 32 H 0.103 0.897 33 H 0.039 0.961 34 H 0.081 0.919 35 H 0.050 0.950 36 H 0.095 0.905 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.116 0.884 41 H 0.112 0.888 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.831 -18.100 2.030 18.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.320 5.320 3 C 0.129 3.871 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 C 0.135 3.865 13 C -0.245 4.245 14 C -0.087 4.087 15 C -0.174 4.174 16 C -0.025 4.025 17 N -0.224 5.224 18 C -0.093 4.093 19 C -0.222 4.222 20 C 0.240 3.760 21 O -0.315 6.315 22 C -0.148 4.148 23 C -0.070 4.070 24 C -0.210 4.210 25 H 0.054 0.946 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.131 0.869 32 H 0.121 0.879 33 H 0.057 0.943 34 H 0.099 0.901 35 H 0.069 0.931 36 H 0.113 0.887 37 H 0.131 0.869 38 H 0.114 0.886 39 H 0.097 0.903 40 H 0.134 0.866 41 H 0.130 0.870 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.622 -17.584 1.439 17.717 hybrid contribution -0.147 -0.051 -0.521 0.544 sum 1.475 -17.635 0.917 17.721 Atomic orbital electron populations 1.21475 0.81508 1.01944 0.99683 1.47119 1.04393 1.04658 1.75874 1.19288 0.92073 0.78718 0.97002 1.21579 1.36415 1.06411 0.92644 0.92250 1.24956 0.95379 0.96276 0.97408 1.69930 1.38372 1.14349 1.30770 0.86523 0.77703 0.78721 0.84715 1.20638 1.21060 1.19757 1.17968 0.91551 0.85963 0.90998 1.20519 0.98973 0.91382 1.13612 1.20492 0.93282 0.96449 0.98443 1.19058 0.93065 0.93554 1.11716 1.21059 0.99610 0.94410 0.87392 1.65087 1.08077 1.30976 1.18268 1.23241 0.99048 0.91992 0.95067 1.23101 0.96087 1.03115 0.99888 1.25253 0.91305 0.81069 0.78331 1.90439 1.60647 1.45437 1.34985 1.23429 0.94299 0.98079 0.99033 1.20620 0.98711 0.91281 0.96375 1.20896 0.92644 0.98841 1.08649 0.94606 0.91437 0.92696 0.95222 0.94588 0.92640 0.86944 0.87863 0.94271 0.90054 0.93129 0.88684 0.86866 0.88633 0.90339 0.86644 0.86991 0.85039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.70 10.19 59.85 0.61 2.31 16 2 N -0.62 -13.02 2.99 -181.00 -0.54 -13.56 16 3 C 0.25 6.19 4.91 -5.19 -0.03 6.16 16 4 C -0.53 -14.44 9.39 -34.44 -0.32 -14.77 16 5 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 6 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 7 N -0.90 -25.51 13.29 55.43 0.74 -24.77 16 8 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 C 0.24 4.82 6.55 -83.79 -0.55 4.27 16 13 C -0.22 -3.75 9.21 -39.38 -0.36 -4.11 16 14 C -0.07 -0.99 9.07 -39.62 -0.36 -1.35 16 15 C -0.17 -2.47 5.17 -104.58 -0.54 -3.01 16 16 C 0.10 1.13 4.93 -4.97 -0.02 1.11 16 17 N -0.50 -5.38 5.27 -233.09 -1.23 -6.61 16 18 C 0.03 0.27 6.57 -1.85 -0.01 0.25 16 19 C -0.18 -1.44 6.94 -26.14 -0.18 -1.63 16 20 C 0.37 3.97 8.05 -27.66 -0.22 3.75 16 21 O -0.44 -6.23 17.99 6.00 0.11 -6.12 16 22 C -0.02 -0.21 5.67 -3.78 -0.02 -0.24 16 23 C -0.05 -0.83 9.69 -39.61 -0.38 -1.21 16 24 C -0.19 -3.71 9.21 -39.38 -0.36 -4.07 16 25 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 27 H 0.05 0.85 6.20 -51.93 -0.32 0.52 16 28 H 0.03 0.77 8.07 -51.93 -0.42 0.36 16 29 H 0.04 0.94 6.20 -51.93 -0.32 0.62 16 30 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 31 H 0.11 1.73 6.15 -52.48 -0.32 1.41 16 32 H 0.10 1.27 7.64 -52.49 -0.40 0.87 16 33 H 0.04 0.39 7.66 -51.93 -0.40 -0.01 16 34 H 0.08 0.82 8.02 -51.93 -0.42 0.40 16 35 H 0.05 0.34 8.01 -51.93 -0.42 -0.07 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.79 7.09 -51.93 -0.37 0.42 16 40 H 0.12 1.42 8.14 -51.93 -0.42 0.99 16 41 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 42 H 0.13 2.88 6.14 -52.49 -0.32 2.56 16 LS Contribution 345.53 15.07 5.21 5.21 Total: -1.00 -30.20 345.53 -9.80 -40.00 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -6.21 Total: 0.54 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -2.86 Total: -10.94 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: -1.03 Total: -44.94 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: 0.11 Total: -6.12 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.20 -9.80 -40.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231818364.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.361 kcal (2) G-P(sol) polarization free energy of solvation -30.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds