Wall clock time and date at job start Fri Apr 10 2020 19:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21287 * 119.99749 * 2 1 4 4 N 1.34772 * 120.00293 * 179.97438 * 2 1 3 5 5 C 1.46504 * 120.00156 * 184.77282 * 4 2 1 6 6 C 1.46499 * 120.00146 * 4.76961 * 4 2 1 7 7 C 1.53508 * 114.17546 * 120.00098 * 6 4 2 8 8 N 1.47477 * 87.93224 * 87.80962 * 7 6 4 9 9 C 1.46901 * 110.99639 * 138.70244 * 8 7 6 10 10 C 1.50700 * 109.47062 * 165.18429 * 9 8 7 11 11 C 1.37634 * 120.12965 * 261.52444 * 10 9 8 12 12 C 1.38611 * 120.24930 * 180.02562 * 11 10 9 13 13 C 1.38661 * 120.50265 * 359.97438 * 12 11 10 14 14 C 1.37595 * 120.24337 * 0.02562 * 13 12 11 15 15 C 1.40699 * 120.12631 * 81.55060 * 10 9 8 16 16 C 1.41397 * 120.24230 * 359.95398 * 15 10 9 17 17 H 1.07999 * 120.00037 * 31.16267 * 16 15 10 18 18 C 1.39952 * 120.00042 * 211.16447 * 16 15 10 19 19 N 1.30830 * 119.99775 * 13.08405 * 18 16 15 20 20 Si 1.86790 * 120.00129 * 193.08513 * 18 16 15 21 21 H 1.48508 * 109.46973 * 60.00089 * 20 18 16 22 22 H 1.48500 * 109.47203 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47431 * 300.00292 * 20 18 16 24 24 C 1.47479 * 87.83581 * 27.01495 * 8 7 6 25 25 H 1.08996 * 109.47515 * 264.88507 * 1 2 3 26 26 H 1.09003 * 109.47158 * 24.88986 * 1 2 3 27 27 H 1.09003 * 109.46499 * 144.88541 * 1 2 3 28 28 H 1.08996 * 109.46769 * 273.68425 * 5 4 2 29 29 H 1.08997 * 109.47174 * 33.68089 * 5 4 2 30 30 H 1.08998 * 109.47312 * 153.68394 * 5 4 2 31 31 H 1.09001 * 113.25538 * 347.04573 * 6 4 2 32 32 H 1.09004 * 113.46971 * 333.04941 * 7 6 4 33 33 H 1.09001 * 113.53474 * 202.59197 * 7 6 4 34 34 H 1.09007 * 109.46675 * 45.19138 * 9 8 7 35 35 H 1.08999 * 109.47819 * 285.18857 * 9 8 7 36 36 H 1.08002 * 119.87787 * 0.02801 * 11 10 9 37 37 H 1.08002 * 119.75143 * 180.02562 * 12 11 10 38 38 H 1.07997 * 119.87557 * 180.28115 * 13 12 11 39 39 H 1.08003 * 120.12647 * 180.02562 * 14 13 12 40 40 H 0.96994 * 119.99564 * 179.97438 * 19 18 16 41 41 H 1.09004 * 113.47657 * 87.75095 * 24 8 7 42 42 H 1.09003 * 113.47992 * 218.21932 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 3.6422 -1.1692 0.1061 6 6 1.4524 -2.4337 -0.1044 7 6 1.8324 -3.2781 -1.3288 8 7 2.9059 -3.8783 -0.5149 9 6 3.0024 -5.3244 -0.7550 10 6 4.3090 -5.8383 -0.2074 11 6 5.3826 -6.0292 -1.0471 12 6 6.5854 -6.5024 -0.5462 13 6 6.7219 -6.7881 0.8038 14 6 5.6618 -6.6047 1.6616 15 6 4.4358 -6.1254 1.1641 16 6 3.3397 -5.9327 2.0364 17 1 2.3309 -6.0611 1.6725 18 6 3.5619 -5.5757 3.3712 19 7 4.7467 -5.1719 3.7518 20 14 2.1670 -5.6757 4.6094 21 1 1.6754 -7.0748 4.6893 22 1 2.6578 -5.2471 5.9438 23 1 1.0588 -4.7855 4.1797 24 6 2.0848 -3.5941 0.6767 25 1 -0.3634 -0.0916 1.0235 26 1 -0.3634 0.9322 -0.4325 27 1 -0.3632 -0.8407 -0.5912 28 1 4.0783 -1.0616 -0.8870 29 1 3.9622 -0.3388 0.7354 30 1 3.9732 -2.1089 0.5484 31 1 0.3784 -2.3263 0.0477 32 1 2.2019 -2.6864 -2.1664 33 1 1.0611 -3.9897 -1.6232 34 1 2.9561 -5.5186 -1.8266 35 1 2.1755 -5.8313 -0.2577 36 1 5.2877 -5.8095 -2.1003 37 1 7.4228 -6.6488 -1.2123 38 1 7.6650 -7.1519 1.1840 39 1 5.7704 -6.8275 2.7128 40 1 4.9006 -4.9242 4.6768 41 1 1.3802 -4.3899 0.9184 42 1 2.6680 -3.2705 1.5389 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235522270.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:34 Heat of formation + Delta-G solvation = 31.407046 kcal Electronic energy + Delta-G solvation = -23530.663136 eV Core-core repulsion = 20283.899228 eV Total energy + Delta-G solvation = -3246.763908 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.158 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.56001 -38.79873 -37.44822 -34.43857 -33.62561 -31.32154 -30.40016 -29.52513 -27.82220 -26.13540 -25.44409 -25.13470 -23.28971 -20.96873 -20.73443 -19.56544 -18.21623 -17.23182 -16.98471 -15.93403 -15.55569 -15.48922 -14.94548 -14.68826 -14.44686 -14.13504 -13.55716 -13.23458 -13.11481 -12.74989 -12.62840 -12.51679 -12.26078 -11.86877 -11.70737 -11.56828 -11.42080 -11.35460 -11.21638 -11.00607 -10.74308 -10.60311 -10.44347 -10.33814 -9.67964 -9.47656 -9.45333 -9.21558 -8.40363 -8.24544 -7.36569 -7.31813 -6.73354 -4.37747 2.71383 2.76273 2.94367 3.02768 3.03816 3.18193 3.19471 3.89312 4.46198 4.63435 4.65110 4.69477 5.07515 5.18021 5.36472 5.40535 5.55071 5.64477 5.69731 5.79370 5.91822 5.96954 5.99301 6.09341 6.16574 6.22931 6.34489 6.41988 6.48275 6.52442 6.65496 6.74329 6.93507 7.08607 7.22575 7.36936 7.53553 7.60917 7.66630 7.89691 7.98998 8.06828 8.28563 8.30265 8.59078 8.87550 8.95469 10.22896 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.013707 B = 0.006271 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.220183 B = 4464.109907 C = 5584.756310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.509 3.491 3 O -0.554 6.554 4 N -0.583 5.583 5 C 0.089 3.911 6 C 0.092 3.908 7 C -0.021 4.021 8 N -0.449 5.449 9 C 0.089 3.911 10 C -0.179 4.179 11 C -0.082 4.082 12 C -0.236 4.236 13 C -0.108 4.108 14 C -0.156 4.156 15 C 0.126 3.874 16 C -0.464 4.464 17 H 0.073 0.927 18 C 0.080 3.920 19 N -0.798 5.798 20 Si 0.895 3.105 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.265 1.265 24 C 0.014 3.986 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.047 0.953 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.112 0.888 40 H 0.279 0.721 41 H 0.081 0.919 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.821 2.783 -4.593 10.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.298 3.702 3 O -0.433 6.433 4 N -0.315 5.315 5 C -0.053 4.053 6 C -0.013 4.013 7 C -0.151 4.151 8 N -0.171 5.171 9 C -0.038 4.038 10 C -0.181 4.181 11 C -0.101 4.101 12 C -0.255 4.255 13 C -0.127 4.127 14 C -0.176 4.176 15 C 0.124 3.876 16 C -0.494 4.494 17 H 0.091 0.909 18 C -0.137 4.137 19 N -0.424 5.424 20 Si 0.720 3.280 21 H -0.191 1.191 22 H -0.204 1.204 23 H -0.190 1.190 24 C -0.115 4.115 25 H 0.110 0.890 26 H 0.107 0.893 27 H 0.101 0.899 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.130 0.870 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.656 3.645 -4.437 9.570 hybrid contribution -1.220 -0.590 0.693 1.522 sum -8.877 3.056 -3.744 10.107 Atomic orbital electron populations 1.21967 0.92375 1.04637 1.04522 1.20741 0.90520 0.83107 0.75851 1.90693 1.70941 1.31061 1.50577 1.47485 1.07931 1.04735 1.71317 1.21710 0.78043 1.03964 1.01611 1.22471 0.96062 0.84365 0.98450 1.24297 0.95432 0.97755 0.97643 1.69120 1.31771 1.13413 1.02800 1.21200 0.96752 0.87820 0.98014 1.19396 0.94570 1.09301 0.94797 1.20349 0.93338 0.99437 0.96951 1.20370 0.97207 1.12729 0.95189 1.20695 0.97431 1.00847 0.93736 1.21240 0.93998 1.03446 0.98892 1.17374 0.92757 0.87156 0.90319 1.19339 0.93745 1.42713 0.93636 0.90861 1.25751 0.96156 0.92902 0.98896 1.69789 1.22505 1.31592 1.18558 0.86578 0.81932 0.79695 0.79776 1.19072 1.20440 1.19017 1.24208 0.95874 0.94759 0.96668 0.89012 0.89329 0.89926 0.93163 0.92104 0.88235 0.87836 0.90155 0.91021 0.92844 0.93483 0.89691 0.89695 0.89638 0.87016 0.91021 0.90114 0.88580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.74 9.38 36.01 0.34 -1.40 16 2 C 0.51 7.62 7.77 -10.99 -0.09 7.53 16 3 O -0.55 -10.48 16.79 5.55 0.09 -10.39 16 4 N -0.58 -8.76 3.11 -173.62 -0.54 -9.30 16 5 C 0.09 1.49 9.52 59.85 0.57 2.06 16 6 C 0.09 1.21 4.39 -67.72 -0.30 0.91 16 7 C -0.02 -0.28 7.27 -7.55 -0.05 -0.33 16 8 N -0.45 -7.70 4.83 -246.12 -1.19 -8.88 16 9 C 0.09 1.65 4.70 -4.98 -0.02 1.62 16 10 C -0.18 -3.98 5.52 -103.91 -0.57 -4.55 16 11 C -0.08 -1.78 9.65 -39.66 -0.38 -2.17 16 12 C -0.24 -5.20 10.05 -39.29 -0.39 -5.60 16 13 C -0.11 -2.51 10.02 -39.66 -0.40 -2.90 16 14 C -0.16 -3.91 8.65 -38.88 -0.34 -4.25 16 15 C 0.13 3.09 5.51 -106.83 -0.59 2.50 16 16 C -0.46 -10.90 6.54 -37.74 -0.25 -11.15 16 17 H 0.07 1.63 5.46 -52.49 -0.29 1.35 16 18 C 0.08 1.86 5.19 -17.34 -0.09 1.77 16 19 N -0.80 -19.72 11.14 55.55 0.62 -19.10 16 20 Si 0.90 17.57 29.58 -169.99 -5.03 12.54 16 21 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 22 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 23 H -0.27 -5.01 7.11 56.52 0.40 -4.60 16 24 C 0.01 0.24 4.89 -7.55 -0.04 0.20 16 25 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.08 0.65 6.38 -51.93 -0.33 0.32 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 1.04 7.61 -51.93 -0.40 0.65 16 30 H 0.10 1.86 5.57 -51.93 -0.29 1.57 16 31 H 0.10 1.04 5.93 -51.93 -0.31 0.74 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.07 0.82 7.91 -51.93 -0.41 0.41 16 34 H 0.05 0.90 7.89 -51.92 -0.41 0.49 16 35 H 0.05 0.86 5.83 -51.93 -0.30 0.56 16 36 H 0.08 1.66 8.04 -52.49 -0.42 1.24 16 37 H 0.08 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.11 2.90 6.50 -52.48 -0.34 2.56 16 40 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 41 H 0.08 1.29 6.41 -51.93 -0.33 0.95 16 42 H 0.10 1.87 7.19 -51.93 -0.37 1.50 16 LS Contribution 333.53 15.07 5.03 5.03 Total: -1.00 -28.06 333.53 -9.49 -37.55 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -5.87 Total: 8.32 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: -2.60 Total: -15.76 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: -1.11 Total: -37.28 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -5.03 Total: 12.54 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.06 -9.49 -37.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235522270.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.958 kcal (2) G-P(sol) polarization free energy of solvation -28.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds