Wall clock time and date at job start Fri Apr 10 2020 19:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 119.99853 * 2 1 4 4 C 1.34777 * 120.00418 * 179.97438 * 2 1 3 5 5 O 1.21278 * 119.99582 * 0.02562 * 4 2 1 6 6 C 1.50695 * 119.99919 * 180.02562 * 4 2 1 7 7 C 1.53937 * 113.73516 * 278.76657 * 6 4 2 8 8 N 1.48185 * 86.10198 * 221.96222 * 7 6 4 9 9 C 1.46901 * 111.07389 * 137.52404 * 8 7 6 10 10 C 1.50699 * 109.47217 * 90.56392 * 9 8 7 11 11 C 1.37638 * 120.12591 * 259.99792 * 10 9 8 12 12 C 1.38615 * 120.24728 * 180.02562 * 11 10 9 13 13 C 1.38660 * 120.49905 * 359.97438 * 12 11 10 14 14 C 1.37600 * 120.24968 * 0.02562 * 13 12 11 15 15 C 1.40695 * 120.12779 * 79.73010 * 10 9 8 16 16 C 1.41397 * 120.24321 * 359.97438 * 15 10 9 17 17 H 1.07997 * 120.00363 * 333.96695 * 16 15 10 18 18 C 1.39946 * 120.00170 * 153.96633 * 16 15 10 19 19 N 1.30827 * 119.99890 * 343.66098 * 18 16 15 20 20 Si 1.86797 * 120.00131 * 163.65837 * 18 16 15 21 21 H 1.48495 * 109.47190 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46865 * 120.00179 * 20 18 16 23 23 H 1.48504 * 109.47341 * 239.99765 * 20 18 16 24 24 C 1.47962 * 90.80231 * 24.59993 * 8 7 6 25 25 H 1.09004 * 109.47452 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46551 * 119.99947 * 1 2 3 27 27 H 1.08998 * 109.47297 * 240.00315 * 1 2 3 28 28 H 1.08997 * 109.47314 * 89.99790 * 3 2 1 29 29 H 1.08998 * 109.46954 * 210.00112 * 3 2 1 30 30 H 1.09005 * 109.46959 * 329.99634 * 3 2 1 31 31 H 1.08994 * 112.94225 * 50.33994 * 6 4 2 32 32 H 1.09000 * 113.76150 * 336.24005 * 7 6 4 33 33 H 1.09002 * 113.75714 * 107.60715 * 7 6 4 34 34 H 1.09006 * 109.47265 * 210.56702 * 9 8 7 35 35 H 1.08996 * 109.46716 * 330.56222 * 9 8 7 36 36 H 1.07997 * 119.87738 * 0.02562 * 11 10 9 37 37 H 1.07997 * 119.74890 * 179.97438 * 12 11 10 38 38 H 1.08002 * 119.87399 * 180.02562 * 13 12 11 39 39 H 1.07995 * 120.12364 * 179.97438 * 14 13 12 40 40 H 0.97005 * 120.00046 * 179.97438 * 19 18 16 41 41 H 1.09001 * 113.76338 * 221.08588 * 24 8 7 42 42 H 1.08999 * 113.85842 * 89.72855 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1390 -1.1672 0.0005 5 8 1.5326 -2.2175 0.0005 6 6 3.6459 -1.1670 0.0011 7 6 4.2660 -0.9525 -1.3914 8 7 5.2318 -2.0108 -1.0130 9 6 5.4628 -2.9385 -2.1284 10 6 6.6219 -2.4484 -2.9575 11 6 6.3924 -1.7675 -4.1314 12 6 7.4566 -1.3161 -4.8963 13 6 8.7624 -1.5438 -4.4892 14 6 9.0154 -2.2224 -3.3192 15 6 7.9426 -2.6804 -2.5318 16 6 8.1904 -3.3734 -1.3244 17 1 7.4541 -3.3622 -0.5344 18 6 9.3898 -4.0738 -1.1531 19 7 10.1332 -4.3616 -2.1905 20 14 9.9293 -4.5979 0.5567 21 1 8.9199 -4.1550 1.5518 22 1 10.0549 -6.0768 0.6045 23 1 11.2417 -3.9792 0.8731 24 6 4.2656 -2.5755 -0.0451 25 1 -0.3634 1.0277 -0.0005 26 1 -0.3632 -0.5138 -0.8900 27 1 -0.3634 -0.5138 0.8900 28 1 2.3791 1.5835 1.0276 29 1 3.1499 1.1385 -0.5138 30 1 1.6084 2.0284 -0.5139 31 1 4.0704 -0.5262 0.7738 32 1 3.6074 -1.2327 -2.2134 33 1 4.7190 0.0301 -1.5238 34 1 5.6903 -3.9295 -1.7356 35 1 4.5683 -2.9902 -2.7490 36 1 5.3794 -1.5841 -4.4578 37 1 7.2673 -0.7829 -5.8162 38 1 9.5840 -1.1873 -5.0927 39 1 10.0332 -2.3990 -3.0042 40 1 10.9647 -4.8468 -2.0717 41 1 4.7181 -2.8873 0.8962 42 1 3.6059 -3.3316 -0.4708 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235522315.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:36 Heat of formation + Delta-G solvation = 24.589599 kcal Electronic energy + Delta-G solvation = -22808.947846 eV Core-core repulsion = 19561.888311 eV Total energy + Delta-G solvation = -3247.059535 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.61758 -38.52798 -37.23343 -35.63460 -33.55925 -31.82494 -29.46451 -29.09753 -27.76531 -26.33451 -25.82669 -25.16503 -23.61862 -20.88805 -20.54681 -19.46284 -18.76327 -17.31777 -17.03654 -16.26383 -15.91775 -15.36632 -15.19107 -14.56531 -14.34602 -14.12686 -13.67632 -13.17012 -13.02941 -12.90219 -12.79475 -12.63914 -12.51273 -12.39692 -12.07981 -11.80978 -11.53828 -11.18374 -11.05571 -10.94346 -10.78950 -10.54585 -10.39238 -10.26171 -9.75945 -9.44520 -9.24806 -9.10634 -8.86243 -8.23663 -7.30796 -7.25164 -6.67739 -4.25980 2.54513 2.81251 2.87250 3.03306 3.12926 3.19264 3.29807 4.00452 4.25055 4.53174 4.57638 4.71802 4.90347 5.04502 5.12058 5.19810 5.39554 5.47216 5.48425 5.57405 5.63857 5.77108 5.82182 5.95596 6.03695 6.08334 6.22473 6.28432 6.36525 6.47690 6.54208 6.87529 6.90606 7.17073 7.19430 7.33947 7.44499 7.57618 7.71938 7.97617 8.08987 8.14346 8.19983 8.38769 8.74170 9.00833 9.07923 10.26824 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.017496 B = 0.004523 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.972111 B = 6188.694762 C = 7300.616250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.625 5.625 3 C 0.076 3.924 4 C 0.522 3.478 5 O -0.538 6.538 6 C -0.145 4.145 7 C 0.026 3.974 8 N -0.456 5.456 9 C 0.092 3.908 10 C -0.189 4.189 11 C -0.086 4.086 12 C -0.245 4.245 13 C -0.107 4.107 14 C -0.163 4.163 15 C 0.130 3.870 16 C -0.447 4.447 17 H 0.088 0.912 18 C 0.073 3.927 19 N -0.798 5.798 20 Si 0.903 3.097 21 H -0.259 1.259 22 H -0.277 1.277 23 H -0.274 1.274 24 C 0.022 3.978 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.120 0.880 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.027 0.973 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.116 0.884 40 H 0.278 0.722 41 H 0.090 0.910 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.126 8.933 4.819 15.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.359 5.359 3 C -0.067 4.067 4 C 0.310 3.690 5 O -0.414 6.414 6 C -0.167 4.167 7 C -0.103 4.103 8 N -0.178 5.178 9 C -0.035 4.035 10 C -0.191 4.191 11 C -0.105 4.105 12 C -0.265 4.265 13 C -0.126 4.126 14 C -0.183 4.183 15 C 0.127 3.873 16 C -0.477 4.477 17 H 0.106 0.894 18 C -0.143 4.143 19 N -0.424 5.424 20 Si 0.728 3.272 21 H -0.183 1.183 22 H -0.202 1.202 23 H -0.199 1.199 24 C -0.107 4.107 25 H 0.092 0.908 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.138 0.862 32 H 0.084 0.916 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.045 0.955 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.134 0.866 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.581 8.389 4.965 15.138 hybrid contribution -0.407 -0.376 0.263 0.614 sum -11.989 8.013 5.229 15.339 Atomic orbital electron populations 1.21592 0.79478 1.01991 1.02239 1.47812 1.06894 1.06697 1.74541 1.21899 0.97860 0.84894 1.02030 1.20779 0.90173 0.82892 0.75128 1.90678 1.70334 1.31150 1.49269 1.23309 0.90231 1.01825 1.01329 1.23875 0.93669 0.99637 0.93124 1.68782 1.29980 1.08119 1.10892 1.21183 0.95211 0.96237 0.90881 1.19398 0.93656 1.09396 0.96609 1.20336 0.96130 0.98680 0.95374 1.20278 0.93145 1.11425 1.01642 1.20669 0.95053 0.99747 0.97128 1.21341 0.99603 1.01261 0.96078 1.17371 0.89697 0.88500 0.91744 1.19719 1.01265 1.25836 1.00886 0.89440 1.25955 0.95935 0.94409 0.98051 1.69848 1.11951 1.29683 1.30872 0.86337 0.79335 0.78453 0.83063 1.18282 1.20238 1.19906 1.23800 0.93605 0.93887 0.99380 0.90849 0.92273 0.92282 0.92485 0.90214 0.91048 0.86244 0.91601 0.89038 0.90405 0.95500 0.90132 0.89900 0.89754 0.86576 0.91160 0.89132 0.90398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.80 10.16 59.85 0.61 1.41 16 2 N -0.62 -6.71 3.27 -189.51 -0.62 -7.33 16 3 C 0.08 0.57 10.10 59.85 0.60 1.17 16 4 C 0.52 7.31 7.21 -10.99 -0.08 7.23 16 5 O -0.54 -9.44 15.91 5.56 0.09 -9.35 16 6 C -0.15 -1.97 2.96 -90.84 -0.27 -2.24 16 7 C 0.03 0.39 6.71 -2.63 -0.02 0.38 16 8 N -0.46 -8.39 5.86 -239.57 -1.40 -9.79 16 9 C 0.09 1.90 4.12 -4.98 -0.02 1.88 16 10 C -0.19 -4.48 5.50 -103.91 -0.57 -5.05 16 11 C -0.09 -1.95 9.65 -39.66 -0.38 -2.33 16 12 C -0.25 -5.59 10.05 -39.29 -0.39 -5.98 16 13 C -0.11 -2.57 10.02 -39.66 -0.40 -2.97 16 14 C -0.16 -4.29 8.69 -38.87 -0.34 -4.63 16 15 C 0.13 3.41 5.56 -106.83 -0.59 2.81 16 16 C -0.45 -11.66 8.18 -37.74 -0.31 -11.97 16 17 H 0.09 2.24 6.85 -52.49 -0.36 1.88 16 18 C 0.07 1.84 5.16 -17.34 -0.09 1.75 16 19 N -0.80 -20.72 10.95 55.55 0.61 -20.11 16 20 Si 0.90 18.92 29.59 -169.99 -5.03 13.89 16 21 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 22 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 24 C 0.02 0.36 7.28 -2.75 -0.02 0.34 16 25 H 0.07 0.43 7.79 -51.93 -0.40 0.02 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.62 5.75 -51.93 -0.30 0.33 16 30 H 0.07 0.39 7.92 -51.93 -0.41 -0.02 16 31 H 0.12 1.41 7.92 -51.93 -0.41 1.00 16 32 H 0.07 1.01 7.44 -51.93 -0.39 0.62 16 33 H 0.09 1.28 7.71 -51.93 -0.40 0.88 16 34 H 0.08 1.70 7.30 -51.93 -0.38 1.32 16 35 H 0.03 0.52 7.25 -51.93 -0.38 0.14 16 36 H 0.08 1.62 8.03 -52.49 -0.42 1.20 16 37 H 0.08 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.08 1.82 8.06 -52.49 -0.42 1.39 16 39 H 0.12 3.15 6.20 -52.49 -0.33 2.82 16 40 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 41 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.08 1.32 7.22 -51.93 -0.37 0.95 16 LS Contribution 342.61 15.07 5.16 5.16 Total: -1.00 -30.37 342.61 -9.68 -40.06 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -6.22 Total: 5.66 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: -2.27 Total: -18.19 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: -1.41 Total: -37.23 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.09 Total: -9.35 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.37 -9.68 -40.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235522315.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.645 kcal (2) G-P(sol) polarization free energy of solvation -30.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds