Wall clock time and date at job start Fri Apr 10 2020 19:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46895 * 110.99910 * 2 1 4 4 C 1.53238 * 109.36262 * 187.24086 * 3 2 1 5 5 N 1.47084 * 108.51834 * 306.20808 * 4 3 2 6 6 C 1.34773 * 120.86252 * 231.18944 * 5 4 3 7 7 O 1.21553 * 119.99976 * 356.16091 * 6 5 4 8 8 C 1.47846 * 120.00055 * 176.16438 * 6 5 4 9 9 C 1.39587 * 120.14873 * 49.34638 * 8 6 5 10 10 C 1.37938 * 119.85724 * 179.79219 * 9 8 6 11 11 C 1.38381 * 120.14179 * 0.49159 * 10 9 8 12 12 C 1.38338 * 120.29032 * 359.74262 * 11 10 9 13 13 C 1.50707 * 119.92292 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.46998 * 270.02080 * 13 12 11 15 15 H 1.08001 * 120.00379 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99623 * 180.02562 * 14 13 12 17 17 N 1.31508 * 120.00529 * 359.97438 * 16 14 13 18 18 Si 1.86811 * 119.99858 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46657 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.46812 * 119.99794 * 18 16 14 21 21 H 1.48500 * 109.47110 * 239.99931 * 18 16 14 22 22 C 1.37974 * 120.15079 * 0.02562 * 12 11 10 23 23 C 1.47077 * 118.25715 * 51.14063 * 5 4 3 24 24 C 1.46896 * 110.99980 * 124.30225 * 2 1 3 25 25 H 1.09002 * 109.46829 * 60.00170 * 1 2 3 26 26 H 1.08998 * 109.46725 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47307 * 300.00173 * 1 2 3 28 28 H 1.09005 * 109.49415 * 307.21064 * 3 2 1 29 29 H 1.08996 * 109.49757 * 67.26804 * 3 2 1 30 30 H 1.09005 * 109.63243 * 65.89403 * 4 3 2 31 31 H 1.09010 * 109.63010 * 186.47039 * 4 3 2 32 32 H 1.08007 * 120.06932 * 0.02562 * 9 8 6 33 33 H 1.08003 * 119.93035 * 180.23424 * 10 9 8 34 34 H 1.08004 * 119.85238 * 179.72370 * 11 10 9 35 35 H 1.09000 * 109.47359 * 30.02537 * 13 12 11 36 36 H 1.09000 * 109.46964 * 150.02372 * 13 12 11 37 37 H 0.97004 * 120.00645 * 179.97438 * 17 16 14 38 38 H 1.07993 * 120.07769 * 179.97438 * 22 12 11 39 39 H 1.09001 * 109.62947 * 189.12293 * 23 5 4 40 40 H 1.09004 * 109.78980 * 68.63484 * 23 5 4 41 41 H 1.09008 * 109.49116 * 292.70072 * 24 2 1 42 42 H 1.08994 * 109.49671 * 52.76165 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5164 1.3318 -0.1822 5 7 4.0869 0.4461 0.8442 6 6 5.1051 0.8586 1.6249 7 8 5.6100 1.9487 1.4396 8 6 5.6080 -0.0148 2.7066 9 6 5.9136 -1.3512 2.4438 10 6 6.3864 -2.1595 3.4565 11 6 6.5485 -1.6509 4.7333 12 6 6.2429 -0.3286 5.0016 13 6 6.4219 0.2165 6.3951 14 6 5.1479 0.0251 7.1769 15 1 4.2940 -0.4446 6.7114 16 6 5.0723 0.4498 8.4864 17 7 6.1121 1.0214 9.0535 18 14 3.4932 0.2120 9.4558 19 1 2.4801 -0.4514 8.5963 20 1 3.7653 -0.6349 10.6449 21 1 2.9791 1.5336 9.8964 22 6 5.7736 0.4919 3.9965 23 6 3.5164 -0.9009 0.9968 24 6 1.9954 -0.7729 1.1329 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.5456 1.9337 -0.8184 29 1 1.7551 1.8533 0.9476 30 1 3.7566 0.9459 -1.1730 31 1 3.9252 2.3359 -0.0684 32 1 5.7836 -1.7504 1.4487 33 1 6.6268 -3.1927 3.2536 34 1 6.9148 -2.2892 5.5237 35 1 7.2355 -0.3132 6.8908 36 1 6.6594 1.2790 6.3419 37 1 6.0589 1.3205 9.9747 38 1 5.5350 1.5238 4.2073 39 1 3.9256 -1.3728 1.8902 40 1 3.7561 -1.5046 0.1214 41 1 1.7555 -0.2612 2.0650 42 1 1.5454 -1.7655 1.1365 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250056217.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:54 Heat of formation + Delta-G solvation = -22.218995 kcal Electronic energy + Delta-G solvation = -22725.599780 eV Core-core repulsion = 19476.510472 eV Total energy + Delta-G solvation = -3249.089308 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.158 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.64535 -39.82268 -38.87011 -35.86276 -35.40162 -33.36687 -32.42530 -31.76006 -29.63126 -28.97296 -25.88912 -25.42497 -24.86139 -24.03471 -22.57595 -21.78922 -20.11878 -18.58704 -18.18308 -17.61013 -17.06521 -16.62462 -16.53908 -16.21365 -16.02976 -15.84023 -15.46420 -15.32679 -14.61299 -14.56582 -14.28394 -14.18691 -13.85130 -13.33959 -13.26685 -13.05463 -12.91362 -12.80205 -12.69979 -12.48411 -12.38410 -12.30432 -12.19987 -12.11471 -11.55952 -11.48044 -10.95272 -10.64438 -9.99419 -9.79069 -9.49824 -9.36726 -8.23595 -6.37188 0.08024 0.52147 1.37128 1.37896 1.50863 1.54725 1.88759 2.36792 2.84164 2.93480 3.07758 3.39924 3.82934 3.91579 4.02502 4.05340 4.08986 4.20770 4.26555 4.31099 4.46326 4.54476 4.59314 4.62294 4.63302 4.69950 4.76582 4.80413 4.89600 5.00289 5.02524 5.11682 5.25926 5.31027 5.35564 5.43743 5.51481 5.70512 5.91659 5.93141 5.96026 6.01562 6.15611 6.24666 6.75464 6.97587 7.31689 8.86524 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.015473 B = 0.004345 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.221693 B = 6442.697851 C = 7244.739529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.543 5.543 3 C 0.045 3.955 4 C 0.114 3.886 5 N -0.604 5.604 6 C 0.563 3.437 7 O -0.582 6.582 8 C -0.138 4.138 9 C -0.099 4.099 10 C -0.105 4.105 11 C -0.108 4.108 12 C -0.064 4.064 13 C 0.054 3.946 14 C -0.528 4.528 15 H 0.057 0.943 16 C 0.004 3.996 17 N -0.930 5.930 18 Si 0.966 3.034 19 H -0.263 1.263 20 H -0.272 1.272 21 H -0.280 1.280 22 C -0.094 4.094 23 C 0.099 3.901 24 C 0.038 3.962 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.017 0.983 28 H 0.111 0.889 29 H 0.018 0.982 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.162 0.838 33 H 0.170 0.830 34 H 0.128 0.872 35 H 0.012 0.988 36 H -0.006 1.006 37 H 0.266 0.734 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.018 0.982 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.885 -8.542 -20.616 24.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.268 5.268 3 C -0.084 4.084 4 C -0.008 4.008 5 N -0.337 5.337 6 C 0.353 3.647 7 O -0.463 6.463 8 C -0.141 4.141 9 C -0.117 4.117 10 C -0.123 4.123 11 C -0.126 4.126 12 C -0.064 4.064 13 C 0.017 3.983 14 C -0.566 4.566 15 H 0.075 0.925 16 C -0.194 4.194 17 N -0.570 5.570 18 Si 0.790 3.210 19 H -0.187 1.187 20 H -0.197 1.197 21 H -0.206 1.206 22 C -0.114 4.114 23 C -0.023 4.023 24 C -0.091 4.091 25 H 0.101 0.899 26 H 0.102 0.898 27 H 0.036 0.964 28 H 0.129 0.871 29 H 0.037 0.963 30 H 0.114 0.886 31 H 0.096 0.904 32 H 0.179 0.821 33 H 0.187 0.813 34 H 0.146 0.854 35 H 0.031 0.969 36 H 0.013 0.987 37 H 0.075 0.925 38 H 0.110 0.890 39 H 0.119 0.881 40 H 0.124 0.876 41 H 0.036 0.964 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.435 -8.125 -21.010 24.423 hybrid contribution -0.701 1.166 2.006 2.424 sum -10.135 -6.959 -19.004 22.634 Atomic orbital electron populations 1.22445 0.85640 1.03256 1.01025 1.62043 1.09120 1.12938 1.42663 1.22488 0.94436 0.90219 1.01274 1.21815 0.92487 0.95013 0.91458 1.48167 1.33205 1.16936 1.35345 1.18635 0.79628 0.85375 0.81075 1.90727 1.59599 1.24068 1.71945 1.19761 1.05688 0.95792 0.92818 1.21440 0.98748 0.90533 1.00958 1.21427 0.98261 1.01400 0.91192 1.21434 0.98938 0.93992 0.98229 1.20292 0.95774 0.94963 0.95409 1.18129 0.96701 0.94610 0.88812 1.21384 0.98648 1.39492 0.97072 0.92481 1.25947 1.00083 0.94556 0.98828 1.70088 1.31773 1.41173 1.13982 0.85382 0.79066 0.78031 0.78496 1.18699 1.19748 1.20578 1.20832 0.99438 0.98907 0.92174 1.22403 0.92660 0.82433 1.04772 1.22572 0.95149 1.00139 0.91201 0.89874 0.89811 0.96409 0.87096 0.96330 0.88640 0.90380 0.82090 0.81303 0.85391 0.96950 0.98740 0.92527 0.88962 0.88079 0.87649 0.96404 0.86854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.58 127.69 1.22 1.54 16 2 N -0.54 -9.09 4.88 -921.49 -4.50 -13.59 16 3 C 0.04 0.83 5.62 86.38 0.49 1.31 16 4 C 0.11 2.49 6.59 86.35 0.57 3.05 16 5 N -0.60 -15.50 3.01 -821.31 -2.47 -17.97 16 6 C 0.56 19.42 7.26 86.79 0.63 20.05 16 7 O -0.58 -24.67 16.50 -3.88 -0.06 -24.74 16 8 C -0.14 -4.77 5.04 -20.09 -0.10 -4.87 16 9 C -0.10 -2.54 7.37 22.52 0.17 -2.38 16 10 C -0.11 -2.72 10.03 22.23 0.22 -2.49 16 11 C -0.11 -3.82 9.69 22.33 0.22 -3.60 16 12 C -0.06 -2.86 5.06 -19.90 -0.10 -2.96 16 13 C 0.05 2.97 5.10 29.10 0.15 3.12 16 14 C -0.53 -30.29 9.09 25.60 0.23 -30.06 16 15 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 16 C 0.00 0.23 5.46 84.66 0.46 0.70 16 17 N -0.93 -56.63 13.29 21.45 0.28 -56.34 16 18 Si 0.97 44.28 29.54 68.60 2.03 46.31 16 19 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 22 C -0.09 -4.06 9.38 22.53 0.21 -3.85 16 23 C 0.10 1.85 5.43 86.35 0.47 2.32 16 24 C 0.04 0.68 5.62 86.39 0.49 1.16 16 25 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.08 0.87 8.08 -2.39 -0.02 0.85 16 27 H 0.02 0.26 8.14 -2.39 -0.02 0.24 16 28 H 0.11 1.52 8.11 -2.38 -0.02 1.50 16 29 H 0.02 0.42 8.14 -2.39 -0.02 0.41 16 30 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.08 2.00 7.09 -2.38 -0.02 1.98 16 32 H 0.16 2.84 6.97 -2.91 -0.02 2.82 16 33 H 0.17 2.81 8.06 -2.91 -0.02 2.79 16 34 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 35 H 0.01 0.69 8.08 -2.39 -0.02 0.67 16 36 H -0.01 -0.34 8.08 -2.39 -0.02 -0.36 16 37 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 38 H 0.09 4.40 8.06 -2.91 -0.02 4.38 16 39 H 0.10 2.00 4.66 -2.39 -0.01 1.98 16 40 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.02 0.41 8.14 -2.38 -0.02 0.39 16 42 H 0.11 1.47 8.06 -2.39 -0.02 1.45 16 Total: -1.00 -74.02 343.06 1.59 -72.43 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 1.00 Total: 10.87 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: 5.32 Total: -16.96 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -6.69 Total: -87.91 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.06 Total: -24.74 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -74.02 1.59 -72.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250056217.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.211 kcal (2) G-P(sol) polarization free energy of solvation -74.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds