Wall clock time and date at job start Fri Apr 10 2020 19:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34782 * 120.00237 * 2 1 4 4 O 1.21279 * 120.00261 * 180.02562 * 3 2 1 5 5 C 1.50696 * 119.99691 * 0.02562 * 3 2 1 6 6 C 1.52994 * 109.47290 * 179.97438 * 5 3 2 7 7 C 1.50696 * 109.47670 * 180.02562 * 6 5 3 8 8 H 1.08004 * 119.99713 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00432 * 179.97438 * 7 6 5 10 10 N 1.31509 * 119.99922 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 120.00086 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46932 * 60.00052 * 11 9 7 13 13 H 1.48499 * 109.46929 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.47018 * 299.99954 * 11 9 7 15 15 C 1.39922 * 120.00013 * 180.02562 * 2 1 3 16 16 C 1.38814 * 119.91640 * 269.99435 * 15 2 1 17 17 C 1.38150 * 120.08095 * 179.88927 * 16 15 2 18 18 C 1.38109 * 119.98426 * 0.39602 * 17 16 15 19 19 C 1.39095 * 120.18387 * 359.46361 * 18 17 16 20 20 C 1.38523 * 120.06688 * 0.37110 * 19 18 17 21 21 C 1.50584 * 121.54301 * 180.02562 * 20 19 18 22 22 C 1.52859 * 110.48720 * 339.40060 * 21 20 19 23 23 C 1.53433 * 108.84134 * 51.28703 * 22 21 20 24 24 N 1.39919 * 119.10854 * 180.02562 * 19 18 17 25 25 H 1.09000 * 109.46737 * 269.99566 * 1 2 3 26 26 H 1.08996 * 109.47221 * 29.99402 * 1 2 3 27 27 H 1.09006 * 109.47104 * 149.99519 * 1 2 3 28 28 H 1.09004 * 109.47417 * 299.99714 * 5 3 2 29 29 H 1.09009 * 109.47509 * 59.99316 * 5 3 2 30 30 H 1.09005 * 109.47260 * 299.99932 * 6 5 3 31 31 H 1.09002 * 109.47219 * 59.99790 * 6 5 3 32 32 H 0.97005 * 120.00004 * 179.97438 * 10 9 7 33 33 H 1.07995 * 119.96342 * 359.91608 * 16 15 2 34 34 H 1.08002 * 120.00373 * 180.11001 * 17 16 15 35 35 H 1.08007 * 119.90401 * 179.72248 * 18 17 16 36 36 H 1.09001 * 109.30020 * 99.71065 * 21 20 19 37 37 H 1.08992 * 109.30257 * 219.08686 * 21 20 19 38 38 H 1.09005 * 109.57262 * 171.08617 * 22 21 20 39 39 H 1.08998 * 109.57880 * 291.34634 * 22 21 20 40 40 H 1.08994 * 109.79699 * 56.39881 * 23 22 21 41 41 H 1.08998 * 109.79466 * 177.25614 * 23 22 21 42 42 H 0.97001 * 120.53707 * 346.86934 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3796 3.6352 0.0011 7 6 1.6262 4.9403 0.0023 8 1 0.5461 4.9403 0.0023 9 6 2.3155 6.1343 0.0035 10 7 3.6306 6.1344 0.0041 11 14 1.3815 7.7521 0.0043 12 1 0.5272 7.8299 1.2165 13 1 2.3465 8.8808 0.0062 14 1 0.5283 7.8317 -1.2086 15 6 2.1646 -1.2118 -0.0005 16 6 2.5109 -1.8118 1.2024 17 6 3.1996 -3.0094 1.2058 18 6 3.5515 -3.6066 0.0113 19 6 3.2046 -3.0114 -1.1971 20 6 2.5110 -1.8124 -1.2062 21 6 2.1183 -1.1393 -2.4948 22 6 2.9878 -1.6415 -3.6473 23 6 2.9678 -3.1757 -3.6511 24 7 3.5721 -3.6363 -2.3938 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3633 0.8900 -0.5137 27 1 -0.3634 -0.8900 -0.5139 28 1 0.7584 2.5303 -0.8892 29 1 0.7590 2.5298 0.8908 30 1 3.0063 3.5771 0.8911 31 1 3.0063 3.5779 -0.8889 32 1 4.1156 6.9744 0.0045 33 1 2.2412 -1.3422 2.1367 34 1 3.4668 -3.4760 2.1424 35 1 4.0939 -4.5406 0.0155 36 1 1.0725 -1.3574 -2.7109 37 1 2.2445 -0.0617 -2.3914 38 1 2.5924 -1.2689 -4.5923 39 1 4.0103 -1.2880 -3.5145 40 1 1.9396 -3.5313 -3.7175 41 1 3.5441 -3.5503 -4.4970 42 1 4.2165 -4.3613 -2.3937 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262622541.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:03 Heat of formation + Delta-G solvation = -12.504896 kcal Electronic energy + Delta-G solvation = -22899.285545 eV Core-core repulsion = 19650.617472 eV Total energy + Delta-G solvation = -3248.668073 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.57204 -38.90599 -36.47471 -35.12739 -33.49558 -32.73831 -30.98367 -30.39619 -29.05221 -26.47766 -25.69977 -24.86522 -23.18081 -22.84027 -21.02535 -19.67434 -18.88814 -17.38100 -16.75641 -16.46097 -15.84644 -15.58697 -15.33424 -15.24346 -14.41437 -14.30721 -13.87264 -13.83211 -13.40743 -13.08284 -13.02141 -12.84288 -12.46190 -12.31630 -12.15572 -12.07586 -11.75648 -11.21802 -11.10472 -10.90084 -10.85282 -10.77784 -10.60614 -9.99533 -9.92980 -9.61185 -9.17816 -9.02711 -8.54750 -8.48332 -8.29981 -7.39952 -5.93985 -3.98625 1.39560 1.65879 3.19702 3.25115 3.35629 3.40299 3.41835 3.47440 3.83727 4.48677 4.66590 4.78053 4.92041 5.09209 5.15243 5.22711 5.25757 5.40755 5.41505 5.47663 5.48699 5.56563 5.59681 5.65420 5.75447 5.79449 5.90479 6.14133 6.17141 6.22153 6.24579 6.27325 6.54953 6.60478 6.76787 6.86698 7.09408 7.38852 7.66945 7.70964 7.76111 7.88082 8.09197 8.40315 8.79120 9.09689 9.64766 11.16917 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.024217 B = 0.003696 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.941634 B = 7573.852145 C = 7960.562284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.593 5.593 3 C 0.512 3.488 4 O -0.519 6.519 5 C -0.126 4.126 6 C 0.037 3.963 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.059 3.941 10 N -0.890 5.890 11 Si 0.893 3.107 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.190 3.810 16 C -0.162 4.162 17 C -0.075 4.075 18 C -0.192 4.192 19 C 0.217 3.783 20 C -0.143 4.143 21 C -0.067 4.067 22 C -0.139 4.139 23 C 0.126 3.874 24 N -0.754 5.754 25 H 0.056 0.944 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.261 0.739 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.056 0.944 41 H 0.076 0.924 42 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.392 -22.205 -4.417 23.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.327 5.327 3 C 0.303 3.697 4 O -0.392 6.392 5 C -0.166 4.166 6 C 0.000 4.000 7 C -0.566 4.566 8 H 0.074 0.926 9 C -0.143 4.143 10 N -0.528 5.528 11 Si 0.720 3.280 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.203 1.203 15 C 0.100 3.900 16 C -0.183 4.183 17 C -0.094 4.094 18 C -0.214 4.214 19 C 0.115 3.885 20 C -0.148 4.148 21 C -0.105 4.105 22 C -0.177 4.177 23 C 0.001 3.999 24 N -0.386 5.386 25 H 0.074 0.926 26 H 0.099 0.901 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.042 0.958 31 H 0.041 0.959 32 H 0.071 0.929 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -4.673 -21.945 -4.585 22.901 hybrid contribution -0.250 0.631 0.097 0.686 sum -4.924 -21.315 -4.489 22.332 Atomic orbital electron populations 1.21777 0.78781 1.03115 1.01965 1.45677 1.06682 1.03947 1.76411 1.21707 0.88519 0.84998 0.74433 1.90694 1.14342 1.86957 1.47201 1.21897 1.00707 0.91544 1.02404 1.18907 0.93172 0.89341 0.98624 1.21172 0.92870 0.90979 1.51546 0.92645 1.25018 0.94807 0.99184 0.95300 1.69990 1.06063 1.26675 1.50071 0.86659 0.79549 0.83213 0.78537 1.20242 1.21298 1.20251 1.17250 0.94667 0.86312 0.91795 1.21073 1.02968 0.96944 0.97320 1.20690 0.96703 0.94721 0.97299 1.20631 1.07835 1.01799 0.91174 1.17339 0.94237 0.90736 0.86175 1.19447 1.05395 0.94928 0.95079 1.20173 0.98785 1.00494 0.91002 1.21889 1.01471 0.95480 0.98847 1.21497 0.97938 0.94569 0.85908 1.44584 1.49747 1.40513 1.03784 0.92569 0.90130 0.91630 0.90172 0.90120 0.95825 0.95869 0.92902 0.86275 0.85954 0.86362 0.91425 0.90461 0.90542 0.91052 0.92563 0.90515 0.76563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.01 10.23 59.85 0.61 1.62 16 2 N -0.59 -9.57 2.07 -120.78 -0.25 -9.82 16 3 C 0.51 10.50 6.93 -10.98 -0.08 10.43 16 4 O -0.52 -13.00 15.95 5.56 0.09 -12.91 16 5 C -0.13 -2.61 4.19 -27.89 -0.12 -2.73 16 6 C 0.04 1.01 4.26 -27.89 -0.12 0.89 16 7 C -0.53 -15.03 9.11 -34.44 -0.31 -15.34 16 8 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 10 N -0.89 -27.63 13.29 55.43 0.74 -26.90 16 11 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 C 0.19 3.04 4.43 -83.64 -0.37 2.67 16 16 C -0.16 -2.40 9.95 -39.40 -0.39 -2.79 16 17 C -0.07 -0.94 10.04 -39.66 -0.40 -1.34 16 18 C -0.19 -2.31 9.87 -39.31 -0.39 -2.70 16 19 C 0.22 2.84 6.47 -83.74 -0.54 2.30 16 20 C -0.14 -2.12 5.77 -104.26 -0.60 -2.72 16 21 C -0.07 -0.91 5.40 -28.01 -0.15 -1.06 16 22 C -0.14 -1.53 6.11 -26.58 -0.16 -1.69 16 23 C 0.13 1.11 7.11 -3.60 -0.03 1.08 16 24 N -0.75 -7.64 5.80 -58.12 -0.34 -7.98 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.89 6.44 -51.93 -0.33 0.55 16 27 H 0.06 0.65 8.05 -51.93 -0.42 0.23 16 28 H 0.08 1.50 7.40 -51.93 -0.38 1.11 16 29 H 0.08 1.53 8.11 -51.92 -0.42 1.11 16 30 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 31 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 33 H 0.12 1.71 8.06 -52.49 -0.42 1.28 16 34 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 1.26 7.06 -51.93 -0.37 0.89 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.40 3.14 8.86 -40.82 -0.36 2.77 16 LS Contribution 344.51 15.07 5.19 5.19 Total: -1.00 -35.35 344.51 -9.21 -44.56 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -6.47 Total: 0.91 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -3.14 Total: -9.76 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 0.15 Total: -44.70 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.09 Total: -12.91 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.35 -9.21 -44.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262622541.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.056 kcal (2) G-P(sol) polarization free energy of solvation -35.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds