Wall clock time and date at job start Fri Apr 10 2020 19:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.47954 * 111.00194 * 2 1 4 4 C 1.53938 * 86.30643 * 137.63176 * 3 2 1 5 5 C 1.48309 * 111.10416 * 99.25066 * 2 1 3 6 6 H 1.08996 * 113.75989 * 336.77429 * 5 2 1 7 7 C 1.52997 * 113.86095 * 108.12654 * 5 2 1 8 8 N 1.46503 * 109.47081 * 281.61440 * 7 5 2 9 9 C 1.34774 * 120.00042 * 179.97438 * 8 7 5 10 10 O 1.21284 * 119.99888 * 359.97438 * 9 8 7 11 11 C 1.50701 * 120.00027 * 179.97438 * 9 8 7 12 12 H 1.08995 * 109.46856 * 60.00140 * 11 9 8 13 13 C 1.50700 * 109.47141 * 299.99658 * 11 9 8 14 14 H 1.08007 * 119.99562 * 125.76819 * 13 11 9 15 15 C 1.37877 * 120.00153 * 305.77910 * 13 11 9 16 16 N 1.31504 * 120.00262 * 5.08301 * 15 13 11 17 17 Si 1.86807 * 119.99791 * 185.08949 * 15 13 11 18 18 H 1.48504 * 109.46961 * 59.99543 * 17 15 13 19 19 H 1.48494 * 109.47095 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.46974 * 299.99850 * 17 15 13 21 21 C 1.50704 * 109.47225 * 180.02562 * 11 9 8 22 22 C 1.38234 * 119.99563 * 294.80769 * 21 11 9 23 23 C 1.38244 * 119.99787 * 179.76318 * 22 21 11 24 24 C 1.38240 * 119.99679 * 0.49214 * 23 22 21 25 25 C 1.38229 * 119.99924 * 359.77958 * 24 23 22 26 26 C 1.38234 * 120.00537 * 359.96283 * 25 24 23 27 27 H 1.09005 * 109.46842 * 81.53014 * 1 2 3 28 28 H 1.09004 * 109.47254 * 201.52567 * 1 2 3 29 29 H 1.09001 * 109.47440 * 321.52682 * 1 2 3 30 30 H 1.09006 * 113.75974 * 23.26501 * 3 2 1 31 31 H 1.08998 * 113.76381 * 252.00680 * 3 2 1 32 32 H 1.09005 * 113.73061 * 90.58092 * 4 3 2 33 33 H 1.08997 * 113.73889 * 221.76261 * 4 3 2 34 34 H 1.09000 * 109.47099 * 41.60731 * 7 5 2 35 35 H 1.08996 * 109.47719 * 161.61138 * 7 5 2 36 36 H 0.96995 * 119.99919 * 359.97438 * 8 7 5 37 37 H 0.97005 * 120.00408 * 180.02562 * 16 15 13 38 38 H 1.08002 * 120.00734 * 359.97438 * 22 21 11 39 39 H 1.08001 * 119.99873 * 180.24679 * 23 22 21 40 40 H 1.07993 * 119.99571 * 179.76678 * 24 23 22 41 41 H 1.08001 * 120.00031 * 179.97438 * 25 24 23 42 42 H 1.08002 * 120.00388 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3812 0.0000 4 6 3.0233 0.8819 1.0352 5 6 2.0030 -0.2224 1.3656 6 1 1.3058 0.0469 2.1590 7 6 2.6319 -1.6025 1.5670 8 7 1.5742 -2.5982 1.7568 9 6 1.8945 -3.8926 1.9531 10 8 3.0584 -4.2331 1.9722 11 6 0.8064 -4.9167 2.1489 12 1 0.1625 -4.9352 1.2697 13 6 -0.0106 -4.5558 3.3627 14 1 -1.0829 -4.4555 3.2814 15 6 0.6107 -4.3535 4.5768 16 7 1.9232 -4.3766 4.6557 17 14 -0.4119 -4.0466 6.1096 18 1 -1.3024 -5.2101 6.3517 19 1 0.4881 -3.8615 7.2762 20 1 -1.2344 -2.8249 5.9195 21 6 1.4259 -6.2762 2.3472 22 6 2.1356 -6.8687 1.3196 23 6 2.7081 -8.1136 1.5030 24 6 2.5621 -8.7703 2.7107 25 6 1.8476 -8.1801 3.7364 26 6 1.2797 -6.9329 3.5548 27 1 -0.3633 0.1514 -1.0165 28 1 -0.3634 -0.9560 0.3771 29 1 -0.3634 0.8045 0.6394 30 1 1.3010 2.1198 0.3941 31 1 2.4443 1.6809 -0.9488 32 1 3.9469 0.5078 0.5934 33 1 3.1963 1.5807 1.8536 34 1 3.2235 -1.8637 0.6896 35 1 3.2753 -1.5838 2.4466 36 1 0.6434 -2.3260 1.7412 37 1 2.3603 -4.2347 5.5099 38 1 2.2459 -6.3578 0.3745 39 1 3.2660 -8.5749 0.7015 40 1 3.0061 -9.7444 2.8528 41 1 1.7332 -8.6932 4.6798 42 1 0.7211 -6.4720 4.3560 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535646212.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:36 Heat of formation + Delta-G solvation = 26.799614 kcal Electronic energy + Delta-G solvation = -23308.837471 eV Core-core repulsion = 20061.873770 eV Total energy + Delta-G solvation = -3246.963702 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.93394 -38.72808 -37.26871 -33.69990 -33.36227 -30.87023 -30.60923 -29.61526 -28.30405 -26.79919 -24.07055 -24.00738 -22.79969 -21.21504 -20.43652 -19.71630 -18.88049 -16.86027 -16.22637 -15.92342 -15.24431 -15.12383 -15.01334 -14.56387 -14.31969 -13.83558 -13.69812 -13.42111 -13.10386 -12.60838 -12.44929 -12.34901 -12.11734 -11.99695 -11.52859 -11.41964 -11.26078 -11.21537 -10.92756 -10.77934 -10.73158 -10.58898 -10.33709 -10.03651 -9.68903 -9.35715 -8.79446 -8.61050 -8.21168 -7.81220 -7.73154 -7.36599 -6.15478 -4.29911 2.53225 2.62762 3.18519 3.26978 3.27544 3.86844 4.20472 4.27802 4.48350 4.60946 4.88029 5.05603 5.09539 5.18467 5.33074 5.35082 5.42820 5.51685 5.61890 5.76257 5.85902 5.92221 5.96566 6.05951 6.10153 6.13306 6.35062 6.42518 6.50926 6.64986 6.67986 6.86527 6.95135 7.09178 7.12462 7.25444 7.53402 7.63208 7.69790 7.71965 7.84094 8.17703 8.29550 8.66478 8.91109 9.34568 9.86240 10.85196 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.015949 B = 0.005525 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.176276 B = 5066.895527 C = 6163.000064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.476 5.476 3 C -0.002 4.002 4 C -0.138 4.138 5 C 0.021 3.979 6 H 0.083 0.917 7 C 0.150 3.850 8 N -0.733 5.733 9 C 0.557 3.443 10 O -0.551 6.551 11 C 0.055 3.945 12 H 0.054 0.946 13 C -0.539 4.539 14 H 0.066 0.934 15 C 0.071 3.929 16 N -0.844 5.844 17 Si 0.885 3.115 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.276 1.276 21 C -0.016 4.016 22 C -0.114 4.114 23 C -0.143 4.143 24 C -0.144 4.144 25 C -0.149 4.149 26 C -0.060 4.060 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.032 0.968 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.391 0.609 37 H 0.266 0.734 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.787 7.080 -5.704 9.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.199 5.199 3 C -0.131 4.131 4 C -0.176 4.176 5 C -0.089 4.089 6 H 0.101 0.899 7 C 0.025 3.975 8 N -0.386 5.386 9 C 0.346 3.654 10 O -0.427 6.427 11 C 0.033 3.967 12 H 0.072 0.928 13 C -0.576 4.576 14 H 0.084 0.916 15 C -0.136 4.136 16 N -0.477 5.477 17 Si 0.712 3.288 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.017 4.017 22 C -0.132 4.132 23 C -0.161 4.161 24 C -0.162 4.162 25 C -0.167 4.167 26 C -0.078 4.078 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.050 0.950 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.224 0.776 37 H 0.077 0.923 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.596 6.383 -6.085 8.839 hybrid contribution -1.197 0.967 1.728 2.314 sum -1.793 7.350 -4.356 8.730 Atomic orbital electron populations 1.22879 0.89711 1.01728 1.01707 1.68623 1.09054 1.17665 1.24535 1.23888 0.97448 0.91590 1.00136 1.23318 0.98355 0.97232 0.98709 1.23821 0.97126 0.96477 0.91443 0.89946 1.20906 0.90873 0.84994 1.00734 1.45683 1.08518 1.07684 1.76671 1.20776 0.90315 0.82297 0.71976 1.90525 1.21379 1.80498 1.50341 1.17911 0.92571 0.88400 0.97797 0.92803 1.20719 0.93450 1.51230 0.92248 0.91594 1.25049 0.94930 0.94523 0.99062 1.70066 1.07084 1.44729 1.25781 0.86765 0.80257 0.79091 0.82705 1.19817 1.21176 1.20119 1.19846 0.94345 0.94958 0.92514 1.20893 0.98473 0.94883 0.98981 1.20782 1.01917 0.96226 0.97153 1.20784 1.01625 0.99409 0.94418 1.21061 1.00707 0.96920 0.98025 1.21422 0.96701 0.92053 0.97623 0.91380 0.90839 0.94970 0.91563 0.89555 0.88838 0.90959 0.92051 0.91943 0.77623 0.92314 0.88029 0.87991 0.88125 0.88015 0.84644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.13 9.67 60.06 0.58 0.45 16 2 N -0.48 -6.26 6.38 -237.86 -1.52 -7.78 16 3 C 0.00 -0.02 7.95 -2.77 -0.02 -0.04 16 4 C -0.14 -1.55 7.85 -25.79 -0.20 -1.75 16 5 C 0.02 0.29 3.36 -66.46 -0.22 0.06 16 6 H 0.08 1.14 7.93 -51.93 -0.41 0.73 16 7 C 0.15 2.70 5.71 -4.04 -0.02 2.68 16 8 N -0.73 -14.96 5.46 -60.29 -0.33 -15.29 16 9 C 0.56 13.55 5.37 -10.99 -0.06 13.49 16 10 O -0.55 -15.26 15.16 5.55 0.08 -15.17 16 11 C 0.05 1.31 2.67 -94.07 -0.25 1.06 16 12 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 13 C -0.54 -13.21 7.61 -34.44 -0.26 -13.47 16 14 H 0.07 1.57 7.82 -52.48 -0.41 1.16 16 15 C 0.07 1.79 3.19 -17.82 -0.06 1.73 16 16 N -0.84 -22.77 10.41 55.43 0.58 -22.19 16 17 Si 0.88 19.57 29.54 -169.99 -5.02 14.55 16 18 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 19 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 21 C -0.02 -0.38 4.50 -104.62 -0.47 -0.85 16 22 C -0.11 -2.58 8.75 -39.58 -0.35 -2.93 16 23 C -0.14 -2.92 10.05 -39.58 -0.40 -3.32 16 24 C -0.14 -2.89 10.05 -39.58 -0.40 -3.29 16 25 C -0.15 -3.21 10.05 -39.59 -0.40 -3.61 16 26 C -0.06 -1.46 8.00 -39.58 -0.32 -1.77 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.92 7.31 -51.93 -0.38 0.55 16 29 H 0.03 0.34 7.60 -51.93 -0.39 -0.06 16 30 H 0.07 0.61 7.60 -51.93 -0.39 0.22 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.09 1.06 8.10 -51.93 -0.42 0.64 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.39 7.37 7.53 -40.82 -0.31 7.06 16 37 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 39 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 41 H 0.10 1.94 8.06 -52.49 -0.42 1.51 16 42 H 0.14 3.44 4.97 -52.49 -0.26 3.18 16 LS Contribution 341.30 15.07 5.14 5.14 Total: -1.00 -29.82 341.30 -10.25 -40.07 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -6.34 Total: 12.23 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -2.85 Total: -11.56 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: -1.27 Total: -45.26 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: 0.08 Total: -15.17 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.82 -10.25 -40.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535646212.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.869 kcal (2) G-P(sol) polarization free energy of solvation -29.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds