Wall clock time and date at job start Fri Apr 10 2020 19:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.47954 * 111.00194 * 2 1 4 4 C 1.53938 * 86.30643 * 137.63176 * 3 2 1 5 5 C 1.48309 * 111.10416 * 99.25066 * 2 1 3 6 6 H 1.08996 * 113.75989 * 336.77429 * 5 2 1 7 7 C 1.52997 * 113.86095 * 108.12654 * 5 2 1 8 8 N 1.46503 * 109.47081 * 281.61440 * 7 5 2 9 9 C 1.34774 * 120.00042 * 179.97438 * 8 7 5 10 10 O 1.21284 * 119.99888 * 359.97438 * 9 8 7 11 11 C 1.50701 * 120.00027 * 179.97438 * 9 8 7 12 12 H 1.08995 * 109.46856 * 60.00140 * 11 9 8 13 13 C 1.50700 * 109.47141 * 299.99658 * 11 9 8 14 14 H 1.08007 * 119.99562 * 125.76819 * 13 11 9 15 15 C 1.37877 * 120.00153 * 305.77910 * 13 11 9 16 16 N 1.31504 * 120.00262 * 5.08301 * 15 13 11 17 17 Si 1.86807 * 119.99791 * 185.08949 * 15 13 11 18 18 H 1.48504 * 109.46961 * 59.99543 * 17 15 13 19 19 H 1.48494 * 109.47095 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.46974 * 299.99850 * 17 15 13 21 21 C 1.50704 * 109.47225 * 180.02562 * 11 9 8 22 22 C 1.38234 * 119.99563 * 294.80769 * 21 11 9 23 23 C 1.38244 * 119.99787 * 179.76318 * 22 21 11 24 24 C 1.38240 * 119.99679 * 0.49214 * 23 22 21 25 25 C 1.38229 * 119.99924 * 359.77958 * 24 23 22 26 26 C 1.38234 * 120.00537 * 359.96283 * 25 24 23 27 27 H 1.09005 * 109.46842 * 81.53014 * 1 2 3 28 28 H 1.09004 * 109.47254 * 201.52567 * 1 2 3 29 29 H 1.09001 * 109.47440 * 321.52682 * 1 2 3 30 30 H 1.09006 * 113.75974 * 23.26501 * 3 2 1 31 31 H 1.08998 * 113.76381 * 252.00680 * 3 2 1 32 32 H 1.09005 * 113.73061 * 90.58092 * 4 3 2 33 33 H 1.08997 * 113.73889 * 221.76261 * 4 3 2 34 34 H 1.09000 * 109.47099 * 41.60731 * 7 5 2 35 35 H 1.08996 * 109.47719 * 161.61138 * 7 5 2 36 36 H 0.96995 * 119.99919 * 359.97438 * 8 7 5 37 37 H 0.97005 * 120.00408 * 180.02562 * 16 15 13 38 38 H 1.08002 * 120.00734 * 359.97438 * 22 21 11 39 39 H 1.08001 * 119.99873 * 180.24679 * 23 22 21 40 40 H 1.07993 * 119.99571 * 179.76678 * 24 23 22 41 41 H 1.08001 * 120.00031 * 179.97438 * 25 24 23 42 42 H 1.08002 * 120.00388 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3812 0.0000 4 6 3.0233 0.8819 1.0352 5 6 2.0030 -0.2224 1.3656 6 1 1.3058 0.0469 2.1590 7 6 2.6319 -1.6025 1.5670 8 7 1.5742 -2.5982 1.7568 9 6 1.8945 -3.8926 1.9531 10 8 3.0584 -4.2331 1.9722 11 6 0.8064 -4.9167 2.1489 12 1 0.1625 -4.9352 1.2697 13 6 -0.0106 -4.5558 3.3627 14 1 -1.0829 -4.4555 3.2814 15 6 0.6107 -4.3535 4.5768 16 7 1.9232 -4.3766 4.6557 17 14 -0.4119 -4.0466 6.1096 18 1 -1.3024 -5.2101 6.3517 19 1 0.4881 -3.8615 7.2762 20 1 -1.2344 -2.8249 5.9195 21 6 1.4259 -6.2762 2.3472 22 6 2.1356 -6.8687 1.3196 23 6 2.7081 -8.1136 1.5030 24 6 2.5621 -8.7703 2.7107 25 6 1.8476 -8.1801 3.7364 26 6 1.2797 -6.9329 3.5548 27 1 -0.3633 0.1514 -1.0165 28 1 -0.3634 -0.9560 0.3771 29 1 -0.3634 0.8045 0.6394 30 1 1.3010 2.1198 0.3941 31 1 2.4443 1.6809 -0.9488 32 1 3.9469 0.5078 0.5934 33 1 3.1963 1.5807 1.8536 34 1 3.2235 -1.8637 0.6896 35 1 3.2753 -1.5838 2.4466 36 1 0.6434 -2.3260 1.7412 37 1 2.3603 -4.2347 5.5099 38 1 2.2459 -6.3578 0.3745 39 1 3.2660 -8.5749 0.7015 40 1 3.0061 -9.7444 2.8528 41 1 1.7332 -8.6932 4.6798 42 1 0.7211 -6.4720 4.3560 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535646212.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:35 Heat of formation + Delta-G solvation = 6.816192 kcal Electronic energy + Delta-G solvation = -23309.704018 eV Core-core repulsion = 20061.873770 eV Total energy + Delta-G solvation = -3247.830248 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.07277 -40.41935 -39.01101 -35.55972 -35.08687 -32.69796 -31.62727 -31.32693 -29.80444 -28.39494 -25.81063 -25.00664 -24.09842 -22.92521 -22.14444 -21.10166 -20.36181 -18.69218 -17.74093 -17.14110 -16.96036 -16.67616 -16.56041 -16.00199 -15.72477 -15.42977 -15.32726 -15.01357 -14.21325 -14.15976 -14.07915 -13.99586 -13.75703 -13.53384 -13.04972 -12.87467 -12.67750 -12.55699 -12.37278 -12.32712 -12.20320 -11.79619 -11.74366 -11.66562 -11.44357 -11.18321 -10.54560 -10.14480 -9.74830 -9.57501 -9.44246 -9.10607 -8.09229 -6.28062 0.82650 0.92441 1.41694 1.45218 1.51029 2.35158 2.49837 2.73051 3.01510 3.17371 3.33920 3.60249 3.87415 4.15469 4.20306 4.29843 4.34387 4.36358 4.44439 4.49012 4.55695 4.64245 4.71861 4.75923 4.80966 4.92720 4.96461 4.98576 5.01747 5.12869 5.16368 5.25350 5.42029 5.43416 5.55578 5.68265 5.85520 5.93198 5.97118 6.02031 6.14706 6.40849 6.51070 6.76117 7.13713 7.39309 8.00617 8.90223 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.015949 B = 0.005525 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.176276 B = 5066.895527 C = 6163.000064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.497 5.497 3 C 0.008 3.992 4 C -0.131 4.131 5 C 0.021 3.979 6 H 0.085 0.915 7 C 0.155 3.845 8 N -0.723 5.723 9 C 0.555 3.445 10 O -0.591 6.591 11 C 0.046 3.954 12 H 0.062 0.938 13 C -0.538 4.538 14 H 0.070 0.930 15 C 0.040 3.960 16 N -0.874 5.874 17 Si 0.940 3.060 18 H -0.269 1.269 19 H -0.294 1.294 20 H -0.266 1.266 21 C -0.041 4.041 22 C -0.132 4.132 23 C -0.141 4.141 24 C -0.140 4.140 25 C -0.155 4.155 26 C -0.087 4.087 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.046 0.954 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.049 0.951 35 H 0.039 0.961 36 H 0.399 0.601 37 H 0.258 0.742 38 H 0.102 0.898 39 H 0.136 0.864 40 H 0.141 0.859 41 H 0.124 0.876 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.293 7.492 -6.046 9.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.220 5.220 3 C -0.120 4.120 4 C -0.169 4.169 5 C -0.088 4.088 6 H 0.103 0.897 7 C 0.030 3.970 8 N -0.375 5.375 9 C 0.345 3.655 10 O -0.471 6.471 11 C 0.025 3.975 12 H 0.080 0.920 13 C -0.576 4.576 14 H 0.088 0.912 15 C -0.164 4.164 16 N -0.508 5.508 17 Si 0.766 3.234 18 H -0.194 1.194 19 H -0.220 1.220 20 H -0.191 1.191 21 C -0.042 4.042 22 C -0.150 4.150 23 C -0.159 4.159 24 C -0.158 4.158 25 C -0.174 4.174 26 C -0.105 4.105 27 H 0.097 0.903 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.117 0.883 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.233 0.767 37 H 0.067 0.933 38 H 0.120 0.880 39 H 0.154 0.846 40 H 0.159 0.841 41 H 0.142 0.858 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.150 6.829 -6.447 9.462 hybrid contribution -1.039 0.795 1.761 2.194 sum -2.189 7.625 -4.686 9.213 Atomic orbital electron populations 1.22896 0.88980 1.01484 1.02660 1.68585 1.10000 1.19900 1.23546 1.23942 0.97029 0.90461 1.00554 1.23314 0.97798 0.96257 0.99569 1.23709 0.98415 0.94392 0.92315 0.89685 1.20919 0.90271 0.86848 0.98968 1.45616 1.09544 1.07128 1.75174 1.20876 0.89727 0.83451 0.71482 1.90482 1.22810 1.81371 1.52478 1.18016 0.92707 0.88818 0.97990 0.92004 1.20904 0.93615 1.50478 0.92612 0.91157 1.25564 0.95425 0.94172 1.01267 1.70232 1.08641 1.46382 1.25576 0.85882 0.78825 0.79267 0.79409 1.19396 1.22010 1.19116 1.19970 0.95607 0.95216 0.93359 1.21048 0.99071 0.96112 0.98752 1.21200 1.01013 0.95284 0.98433 1.21213 1.00377 1.00724 0.93436 1.21373 1.00241 0.96143 0.99600 1.21384 0.98238 0.93596 0.97241 0.90276 0.92316 0.93525 0.89695 0.88326 0.89221 0.89140 0.93307 0.94316 0.76722 0.93262 0.88001 0.84634 0.84145 0.85796 0.86583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.25 9.67 127.69 1.24 0.99 16 2 N -0.50 -12.38 6.38 -906.44 -5.78 -18.16 16 3 C 0.01 0.15 7.95 86.41 0.69 0.84 16 4 C -0.13 -2.73 7.85 31.24 0.25 -2.48 16 5 C 0.02 0.58 3.36 44.95 0.15 0.73 16 6 H 0.09 2.27 7.93 -2.39 -0.02 2.25 16 7 C 0.15 5.73 5.71 86.38 0.49 6.23 16 8 N -0.72 -30.32 5.46 -463.06 -2.53 -32.85 16 9 C 0.56 27.85 5.37 87.66 0.47 28.32 16 10 O -0.59 -33.99 15.16 -3.04 -0.05 -34.04 16 11 C 0.05 2.26 2.67 -13.03 -0.03 2.23 16 12 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 13 C -0.54 -26.77 7.61 25.60 0.19 -26.57 16 14 H 0.07 3.35 7.82 -2.91 -0.02 3.33 16 15 C 0.04 2.01 3.19 84.66 0.27 2.28 16 16 N -0.87 -48.46 10.41 21.45 0.22 -48.24 16 17 Si 0.94 40.46 29.54 68.60 2.03 42.49 16 18 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 19 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 20 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 21 C -0.04 -2.02 4.50 -19.86 -0.09 -2.11 16 22 C -0.13 -5.98 8.75 22.27 0.19 -5.78 16 23 C -0.14 -5.54 10.05 22.27 0.22 -5.32 16 24 C -0.14 -5.25 10.05 22.27 0.22 -5.03 16 25 C -0.16 -6.54 10.05 22.27 0.22 -6.32 16 26 C -0.09 -4.25 8.00 22.27 0.18 -4.07 16 27 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.06 1.44 7.31 -2.38 -0.02 1.42 16 29 H 0.05 0.88 7.60 -2.39 -0.02 0.86 16 30 H 0.08 1.27 7.60 -2.38 -0.02 1.25 16 31 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.09 1.94 8.10 -2.38 -0.02 1.92 16 33 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.40 15.29 7.53 -92.71 -0.70 14.59 16 37 H 0.26 14.21 8.31 -92.70 -0.77 13.44 16 38 H 0.10 4.48 8.06 -2.91 -0.02 4.45 16 39 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 40 H 0.14 4.14 8.06 -2.91 -0.02 4.11 16 41 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 42 H 0.12 6.04 4.97 -2.91 -0.01 6.03 16 Total: -1.00 -65.45 341.30 -1.12 -66.57 By element: Atomic # 1 Polarization: 39.97 SS G_CDS: 0.31 Total: 40.28 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: 4.67 Total: -16.06 kcal Atomic # 7 Polarization: -91.17 SS G_CDS: -8.08 Total: -99.25 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -0.05 Total: -34.04 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.49 kcal Total: -65.45 -1.12 -66.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535646212.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.389 kcal (2) G-P(sol) polarization free energy of solvation -65.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds