Wall clock time and date at job start Fri Apr 10 2020 19:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46894 * 110.99978 * 2 1 4 4 C 1.53244 * 109.33857 * 187.25109 * 3 2 1 5 5 N 1.47077 * 108.51795 * 306.17112 * 4 3 2 6 6 C 1.34787 * 120.87772 * 231.18537 * 5 4 3 7 7 O 1.21277 * 119.99906 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.99796 * 179.72517 * 6 5 4 9 9 H 1.08998 * 109.47158 * 300.27380 * 8 6 5 10 10 C 1.50700 * 109.47070 * 60.27737 * 8 6 5 11 11 H 1.08001 * 120.00350 * 25.34697 * 10 8 6 12 12 C 1.37876 * 119.99780 * 205.35137 * 10 8 6 13 13 N 1.31515 * 120.00532 * 5.67049 * 12 10 8 14 14 Si 1.86804 * 119.99965 * 185.66427 * 12 10 8 15 15 H 1.48507 * 109.47061 * 90.00157 * 14 12 10 16 16 H 1.48494 * 109.47600 * 210.00066 * 14 12 10 17 17 H 1.48497 * 109.47158 * 330.00593 * 14 12 10 18 18 C 1.50694 * 109.46978 * 180.27389 * 8 6 5 19 19 C 1.38231 * 120.00241 * 293.50482 * 18 8 6 20 20 C 1.38242 * 120.00288 * 179.78809 * 19 18 8 21 21 C 1.38244 * 119.99508 * 0.44066 * 20 19 18 22 22 C 1.38232 * 120.00173 * 359.81138 * 21 20 19 23 23 C 1.38237 * 119.99830 * 359.97438 * 22 21 20 24 24 C 1.47074 * 118.24153 * 51.45775 * 5 4 3 25 25 C 1.46899 * 110.99431 * 124.30013 * 2 1 3 26 26 H 1.09001 * 109.46655 * 60.00501 * 1 2 3 27 27 H 1.08996 * 109.47444 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47315 * 300.00621 * 1 2 3 29 29 H 1.08998 * 109.49315 * 67.28900 * 3 2 1 30 30 H 1.09000 * 109.51819 * 307.22329 * 3 2 1 31 31 H 1.09000 * 109.62573 * 186.46104 * 4 3 2 32 32 H 1.08999 * 109.62882 * 65.88035 * 4 3 2 33 33 H 0.96993 * 120.00549 * 179.97438 * 13 12 10 34 34 H 1.07998 * 120.00305 * 359.97438 * 19 18 8 35 35 H 1.07996 * 120.00370 * 180.27420 * 20 19 18 36 36 H 1.07996 * 119.99804 * 179.83361 * 21 20 19 37 37 H 1.07995 * 120.00015 * 180.02562 * 22 21 20 38 38 H 1.08005 * 119.99791 * 180.02562 * 23 22 21 39 39 H 1.08998 * 109.62972 * 68.24900 * 24 5 4 40 40 H 1.09000 * 109.63207 * 188.83347 * 24 5 4 41 41 H 1.08997 * 109.49638 * 292.70601 * 25 2 1 42 42 H 1.08999 * 109.49784 * 52.76229 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5165 1.3311 -0.1825 5 7 4.0869 0.4459 0.8443 6 6 5.1055 0.8582 1.6247 7 8 5.5635 1.9725 1.4854 8 6 5.6708 -0.0630 2.6749 9 1 4.8860 -0.3338 3.3811 10 6 6.2050 -1.3084 2.0156 11 1 6.5243 -1.2790 0.9843 12 6 6.2862 -2.4854 2.7291 13 7 5.7953 -2.5510 3.9475 14 14 7.0931 -3.9870 1.9652 15 1 8.5439 -3.9846 2.2825 16 1 6.4686 -5.2175 2.5136 17 1 6.9087 -3.9525 0.4921 18 6 6.7869 0.6357 3.4077 19 6 7.9562 0.9554 2.7434 20 6 8.9784 1.6002 3.4146 21 6 8.8346 1.9171 4.7525 22 6 7.6674 1.5928 5.4182 23 6 6.6436 0.9519 4.7458 24 6 3.5204 -0.9032 0.9928 25 6 1.9953 -0.7729 1.1330 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.7554 1.8531 0.9478 30 1 1.5458 1.9341 -0.8181 31 1 3.9255 2.3350 -0.0689 32 1 3.7563 0.9449 -1.1732 33 1 5.8521 -3.3791 4.4493 34 1 8.0701 0.7041 1.6993 35 1 9.8902 1.8539 2.8945 36 1 9.6342 2.4185 5.2776 37 1 7.5550 1.8407 6.4632 38 1 5.7314 0.6989 5.2658 39 1 3.7605 -1.5001 0.1129 40 1 3.9321 -1.3772 1.8838 41 1 1.7554 -0.2613 2.0651 42 1 1.5452 -1.7656 1.1366 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001540408446.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:38 Heat of formation + Delta-G solvation = -1.114572 kcal Electronic energy + Delta-G solvation = -23651.967393 eV Core-core repulsion = 20403.793242 eV Total energy + Delta-G solvation = -3248.174151 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.63237 -38.25057 -37.13323 -34.09349 -33.58206 -31.19172 -30.63394 -29.90542 -28.41960 -27.14003 -24.44045 -23.50820 -23.23360 -21.56812 -21.20876 -20.05378 -18.17293 -16.87098 -16.15349 -15.90585 -15.30618 -14.91962 -14.73567 -14.61850 -14.46133 -14.17775 -13.96092 -13.76438 -12.92057 -12.75265 -12.48949 -12.42059 -12.19428 -11.90511 -11.68465 -11.54111 -11.46244 -11.09531 -11.04540 -10.92970 -10.76198 -10.68339 -10.34068 -10.23813 -9.97195 -9.43838 -8.75087 -8.55470 -8.37607 -7.91596 -7.83616 -7.58236 -6.28344 -4.32633 2.40909 2.43475 3.20549 3.28415 3.30032 3.65759 3.78312 4.11948 4.28628 4.84114 5.07391 5.13583 5.17820 5.30598 5.40308 5.58286 5.65206 5.74317 5.75572 5.81638 5.83450 5.88385 5.90146 5.95397 6.15046 6.22661 6.31317 6.41427 6.51908 6.61502 6.72227 6.87766 6.98444 7.09261 7.13454 7.18257 7.32340 7.39815 7.48516 7.62489 7.76410 7.97570 8.06935 8.28085 8.68456 9.19372 9.31013 10.79628 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.013687 B = 0.006632 C = 0.005081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.284634 B = 4221.151826 C = 5509.608419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.544 5.544 3 C 0.044 3.956 4 C 0.115 3.885 5 N -0.612 5.612 6 C 0.530 3.470 7 O -0.568 6.568 8 C 0.054 3.946 9 H 0.083 0.917 10 C -0.513 4.513 11 H 0.063 0.937 12 C 0.076 3.924 13 N -0.876 5.876 14 Si 0.894 3.106 15 H -0.278 1.278 16 H -0.285 1.285 17 H -0.271 1.271 18 C -0.009 4.009 19 C -0.083 4.083 20 C -0.135 4.135 21 C -0.149 4.149 22 C -0.133 4.133 23 C -0.116 4.116 24 C 0.118 3.882 25 C 0.038 3.962 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.022 0.978 29 H 0.034 0.966 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.267 0.733 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.066 0.934 40 H 0.127 0.873 41 H 0.035 0.965 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.523 3.315 -3.394 8.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.269 5.269 3 C -0.084 4.084 4 C -0.009 4.009 5 N -0.346 5.346 6 C 0.321 3.679 7 O -0.447 6.447 8 C 0.033 3.967 9 H 0.101 0.899 10 C -0.550 4.550 11 H 0.081 0.919 12 C -0.129 4.129 13 N -0.512 5.512 14 Si 0.721 3.279 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.195 1.195 18 C -0.010 4.010 19 C -0.102 4.102 20 C -0.154 4.154 21 C -0.167 4.167 22 C -0.151 4.151 23 C -0.134 4.134 24 C -0.005 4.005 25 C -0.091 4.091 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.040 0.960 29 H 0.053 0.947 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.129 0.871 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.128 0.872 39 H 0.084 0.916 40 H 0.145 0.855 41 H 0.054 0.946 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.153 3.543 -3.724 8.017 hybrid contribution 0.118 -0.612 0.415 0.748 sum -6.035 2.932 -3.309 7.481 Atomic orbital electron populations 1.22344 0.87796 1.01868 1.00221 1.61983 1.07211 1.13660 1.44035 1.22472 0.96104 0.89349 1.00516 1.21513 0.91190 0.96229 0.91953 1.48022 1.35374 1.15166 1.36041 1.21610 0.77470 0.87176 0.81594 1.90567 1.60452 1.22250 1.71429 1.18096 0.93941 0.92103 0.92544 0.89896 1.20648 1.44456 0.91770 0.98175 0.91883 1.24912 0.94430 0.98739 0.94859 1.69894 1.43203 1.27703 1.10401 0.86548 0.79974 0.81752 0.79660 1.20382 1.21019 1.19534 1.20012 0.95826 0.91941 0.93217 1.20822 0.92947 0.96921 0.99467 1.20953 0.98701 1.00947 0.94753 1.20790 0.97694 1.03205 0.95006 1.20886 0.94509 1.00892 0.98811 1.20962 0.98659 0.98990 0.94821 1.22098 0.89610 0.83506 1.05270 1.22734 0.97193 0.98078 0.91076 0.91688 0.91447 0.95978 0.94723 0.90334 0.89313 0.91730 0.92314 0.87107 0.87637 0.87773 0.87641 0.87154 0.91613 0.85470 0.94645 0.90024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.58 60.07 0.58 0.86 16 2 N -0.54 -7.57 4.88 -242.31 -1.18 -8.75 16 3 C 0.04 0.62 5.62 -3.70 -0.02 0.60 16 4 C 0.11 1.89 6.60 -3.60 -0.02 1.87 16 5 N -0.61 -11.89 3.00 -172.18 -0.52 -12.41 16 6 C 0.53 12.00 6.99 -10.98 -0.08 11.92 16 7 O -0.57 -14.02 14.89 5.56 0.08 -13.94 16 8 C 0.05 1.27 1.52 -94.08 -0.14 1.13 16 9 H 0.08 2.06 6.80 -51.93 -0.35 1.71 16 10 C -0.51 -12.48 5.32 -34.44 -0.18 -12.67 16 11 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 12 C 0.08 1.86 5.35 -17.82 -0.10 1.76 16 13 N -0.88 -22.34 12.92 55.43 0.72 -21.62 16 14 Si 0.89 19.65 29.54 -169.99 -5.02 14.63 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 18 C -0.01 -0.21 4.29 -104.63 -0.45 -0.66 16 19 C -0.08 -1.91 8.33 -39.58 -0.33 -2.24 16 20 C -0.14 -2.73 10.05 -39.58 -0.40 -3.13 16 21 C -0.15 -2.83 10.05 -39.58 -0.40 -3.22 16 22 C -0.13 -2.61 10.05 -39.58 -0.40 -3.01 16 23 C -0.12 -2.57 9.67 -39.58 -0.38 -2.95 16 24 C 0.12 2.13 5.74 -3.37 -0.02 2.11 16 25 C 0.04 0.57 5.64 -3.46 -0.02 0.55 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 28 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.91 8.11 -51.93 -0.42 0.49 16 31 H 0.09 1.53 7.06 -51.93 -0.37 1.16 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 34 H 0.11 2.57 7.88 -52.49 -0.41 2.15 16 35 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 36 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 38 H 0.11 2.36 7.96 -52.48 -0.42 1.94 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.13 2.61 5.02 -51.93 -0.26 2.35 16 41 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 1.10 8.06 -51.93 -0.42 0.68 16 LS Contribution 339.43 15.07 5.12 5.12 Total: -1.00 -27.94 339.43 -9.59 -37.53 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -6.42 Total: 6.52 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -2.36 Total: -7.07 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: -0.98 Total: -42.78 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.08 Total: -13.94 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -27.94 -9.59 -37.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001540408446.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.415 kcal (2) G-P(sol) polarization free energy of solvation -27.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds