Wall clock time and date at job start Fri Apr 10 2020 19:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46894 * 110.99978 * 2 1 4 4 C 1.53244 * 109.33857 * 187.25109 * 3 2 1 5 5 N 1.47077 * 108.51795 * 306.17112 * 4 3 2 6 6 C 1.34787 * 120.87772 * 231.18537 * 5 4 3 7 7 O 1.21277 * 119.99906 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.99796 * 179.72517 * 6 5 4 9 9 H 1.08998 * 109.47158 * 300.27380 * 8 6 5 10 10 C 1.50700 * 109.47070 * 60.27737 * 8 6 5 11 11 H 1.08001 * 120.00350 * 25.34697 * 10 8 6 12 12 C 1.37876 * 119.99780 * 205.35137 * 10 8 6 13 13 N 1.31515 * 120.00532 * 5.67049 * 12 10 8 14 14 Si 1.86804 * 119.99965 * 185.66427 * 12 10 8 15 15 H 1.48507 * 109.47061 * 90.00157 * 14 12 10 16 16 H 1.48494 * 109.47600 * 210.00066 * 14 12 10 17 17 H 1.48497 * 109.47158 * 330.00593 * 14 12 10 18 18 C 1.50694 * 109.46978 * 180.27389 * 8 6 5 19 19 C 1.38231 * 120.00241 * 293.50482 * 18 8 6 20 20 C 1.38242 * 120.00288 * 179.78809 * 19 18 8 21 21 C 1.38244 * 119.99508 * 0.44066 * 20 19 18 22 22 C 1.38232 * 120.00173 * 359.81138 * 21 20 19 23 23 C 1.38237 * 119.99830 * 359.97438 * 22 21 20 24 24 C 1.47074 * 118.24153 * 51.45775 * 5 4 3 25 25 C 1.46899 * 110.99431 * 124.30013 * 2 1 3 26 26 H 1.09001 * 109.46655 * 60.00501 * 1 2 3 27 27 H 1.08996 * 109.47444 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47315 * 300.00621 * 1 2 3 29 29 H 1.08998 * 109.49315 * 67.28900 * 3 2 1 30 30 H 1.09000 * 109.51819 * 307.22329 * 3 2 1 31 31 H 1.09000 * 109.62573 * 186.46104 * 4 3 2 32 32 H 1.08999 * 109.62882 * 65.88035 * 4 3 2 33 33 H 0.96993 * 120.00549 * 179.97438 * 13 12 10 34 34 H 1.07998 * 120.00305 * 359.97438 * 19 18 8 35 35 H 1.07996 * 120.00370 * 180.27420 * 20 19 18 36 36 H 1.07996 * 119.99804 * 179.83361 * 21 20 19 37 37 H 1.07995 * 120.00015 * 180.02562 * 22 21 20 38 38 H 1.08005 * 119.99791 * 180.02562 * 23 22 21 39 39 H 1.08998 * 109.62972 * 68.24900 * 24 5 4 40 40 H 1.09000 * 109.63207 * 188.83347 * 24 5 4 41 41 H 1.08997 * 109.49638 * 292.70601 * 25 2 1 42 42 H 1.08999 * 109.49784 * 52.76229 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5165 1.3311 -0.1825 5 7 4.0869 0.4459 0.8443 6 6 5.1055 0.8582 1.6247 7 8 5.5635 1.9725 1.4854 8 6 5.6708 -0.0630 2.6749 9 1 4.8860 -0.3338 3.3811 10 6 6.2050 -1.3084 2.0156 11 1 6.5243 -1.2790 0.9843 12 6 6.2862 -2.4854 2.7291 13 7 5.7953 -2.5510 3.9475 14 14 7.0931 -3.9870 1.9652 15 1 8.5439 -3.9846 2.2825 16 1 6.4686 -5.2175 2.5136 17 1 6.9087 -3.9525 0.4921 18 6 6.7869 0.6357 3.4077 19 6 7.9562 0.9554 2.7434 20 6 8.9784 1.6002 3.4146 21 6 8.8346 1.9171 4.7525 22 6 7.6674 1.5928 5.4182 23 6 6.6436 0.9519 4.7458 24 6 3.5204 -0.9032 0.9928 25 6 1.9953 -0.7729 1.1330 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.7554 1.8531 0.9478 30 1 1.5458 1.9341 -0.8181 31 1 3.9255 2.3350 -0.0689 32 1 3.7563 0.9449 -1.1732 33 1 5.8521 -3.3791 4.4493 34 1 8.0701 0.7041 1.6993 35 1 9.8902 1.8539 2.8945 36 1 9.6342 2.4185 5.2776 37 1 7.5550 1.8407 6.4632 38 1 5.7314 0.6989 5.2658 39 1 3.7605 -1.5001 0.1129 40 1 3.9321 -1.3772 1.8838 41 1 1.7554 -0.2613 2.0651 42 1 1.5452 -1.7656 1.1366 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001540408446.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:37 Heat of formation + Delta-G solvation = -17.149057 kcal Electronic energy + Delta-G solvation = -23652.662701 eV Core-core repulsion = 20403.793242 eV Total energy + Delta-G solvation = -3248.869459 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.24473 -39.75566 -38.64129 -35.78962 -35.17456 -32.92868 -32.01860 -31.53504 -29.80425 -28.72193 -26.04200 -24.93115 -24.59056 -23.20700 -22.70911 -21.54393 -19.74117 -18.71094 -17.87165 -17.49156 -16.89176 -16.26964 -16.18798 -16.10121 -15.72855 -15.57160 -15.54998 -15.37494 -14.58703 -14.25942 -14.03096 -13.97268 -13.60440 -13.30861 -13.29232 -12.95977 -12.86869 -12.80196 -12.66517 -12.28420 -12.17379 -12.11231 -12.01547 -11.88209 -11.62452 -11.26212 -10.65632 -10.36586 -9.67823 -9.55698 -9.25716 -9.22915 -8.18809 -6.27390 0.75740 0.80451 1.42596 1.46510 1.53625 1.89107 2.26049 2.44031 2.97697 3.10559 3.25285 3.87758 4.03986 4.08382 4.20816 4.23844 4.29496 4.35761 4.40193 4.47480 4.52746 4.63498 4.68025 4.70427 4.80051 4.86021 4.90972 4.96000 5.01439 5.03468 5.11984 5.22684 5.36115 5.44230 5.66329 5.73482 5.78276 5.84661 5.94934 6.01786 6.06225 6.23990 6.39843 6.60176 6.74004 7.36415 7.45153 8.89020 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.013687 B = 0.006632 C = 0.005081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.284634 B = 4221.151826 C = 5509.608419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.550 5.550 3 C 0.053 3.947 4 C 0.111 3.889 5 N -0.610 5.610 6 C 0.524 3.476 7 O -0.595 6.595 8 C 0.061 3.939 9 H 0.061 0.939 10 C -0.509 4.509 11 H 0.049 0.951 12 C 0.042 3.958 13 N -0.899 5.899 14 Si 0.945 3.055 15 H -0.285 1.285 16 H -0.277 1.277 17 H -0.266 1.266 18 C -0.037 4.037 19 C -0.110 4.110 20 C -0.136 4.136 21 C -0.144 4.144 22 C -0.130 4.130 23 C -0.140 4.140 24 C 0.120 3.880 25 C 0.047 3.953 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.023 0.977 29 H 0.024 0.976 30 H 0.111 0.889 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.267 0.733 34 H 0.094 0.906 35 H 0.135 0.865 36 H 0.147 0.853 37 H 0.139 0.861 38 H 0.105 0.895 39 H 0.066 0.934 40 H 0.099 0.901 41 H 0.025 0.975 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.763 3.572 -3.702 8.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.275 5.275 3 C -0.076 4.076 4 C -0.012 4.012 5 N -0.343 5.343 6 C 0.315 3.685 7 O -0.477 6.477 8 C 0.040 3.960 9 H 0.079 0.921 10 C -0.547 4.547 11 H 0.067 0.933 12 C -0.161 4.161 13 N -0.536 5.536 14 Si 0.770 3.230 15 H -0.211 1.211 16 H -0.203 1.203 17 H -0.190 1.190 18 C -0.038 4.038 19 C -0.128 4.128 20 C -0.154 4.154 21 C -0.161 4.161 22 C -0.148 4.148 23 C -0.158 4.158 24 C -0.003 4.003 25 C -0.081 4.081 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.042 0.958 29 H 0.043 0.957 30 H 0.129 0.871 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.112 0.888 35 H 0.153 0.847 36 H 0.165 0.835 37 H 0.157 0.843 38 H 0.123 0.877 39 H 0.084 0.916 40 H 0.117 0.883 41 H 0.043 0.957 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.435 3.786 -4.056 8.497 hybrid contribution 0.188 -0.636 0.500 0.830 sum -6.247 3.151 -3.556 7.848 Atomic orbital electron populations 1.22430 0.85416 1.03043 1.01217 1.61985 1.09273 1.13249 1.42994 1.22421 0.94036 0.89870 1.01280 1.21711 0.93115 0.95023 0.91338 1.48100 1.34354 1.16036 1.35784 1.21501 0.78168 0.86723 0.82065 1.90526 1.61640 1.23107 1.72439 1.17934 0.93542 0.92193 0.92358 0.92121 1.20589 1.44145 0.92459 0.97483 0.93252 1.25428 0.94806 1.00639 0.95183 1.69982 1.44149 1.28152 1.11296 0.85754 0.78561 0.79432 0.79209 1.21145 1.20267 1.19038 1.20135 0.96196 0.93336 0.94156 1.20845 0.94016 0.98904 0.99062 1.21326 0.98849 0.99625 0.95609 1.21267 0.98331 1.02018 0.94519 1.21293 0.93836 0.99298 1.00371 1.21107 0.99713 1.00396 0.94597 1.22019 0.91808 0.82604 1.03856 1.22581 0.94849 0.99416 0.91276 0.89761 0.90284 0.95824 0.95733 0.87121 0.90396 0.90748 0.92354 0.88793 0.84710 0.83543 0.84290 0.87680 0.91554 0.88311 0.95677 0.88050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.58 127.69 1.22 1.73 16 2 N -0.55 -14.22 4.88 -920.53 -4.49 -18.72 16 3 C 0.05 1.38 5.62 86.39 0.49 1.87 16 4 C 0.11 3.63 6.60 86.35 0.57 4.20 16 5 N -0.61 -24.40 3.00 -817.05 -2.45 -26.85 16 6 C 0.52 24.86 6.99 87.65 0.61 25.47 16 7 O -0.60 -30.66 14.89 -3.02 -0.04 -30.70 16 8 C 0.06 3.01 1.52 -13.03 -0.02 2.99 16 9 H 0.06 3.22 6.80 -2.39 -0.02 3.21 16 10 C -0.51 -25.79 5.32 25.60 0.14 -25.66 16 11 H 0.05 2.58 7.81 -2.91 -0.02 2.56 16 12 C 0.04 2.11 5.35 84.65 0.45 2.56 16 13 N -0.90 -47.11 12.92 21.45 0.28 -46.83 16 14 Si 0.94 40.80 29.54 68.60 2.03 42.83 16 15 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 16 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 17 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 18 C -0.04 -1.82 4.29 -19.87 -0.09 -1.91 16 19 C -0.11 -5.15 8.33 22.27 0.19 -4.96 16 20 C -0.14 -5.31 10.05 22.27 0.22 -5.09 16 21 C -0.14 -5.06 10.05 22.27 0.22 -4.84 16 22 C -0.13 -4.91 10.05 22.27 0.22 -4.68 16 23 C -0.14 -6.31 9.67 22.27 0.22 -6.09 16 24 C 0.12 4.42 5.74 86.51 0.50 4.91 16 25 C 0.05 1.40 5.64 86.54 0.49 1.89 16 26 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.08 1.34 8.08 -2.39 -0.02 1.32 16 28 H 0.02 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.11 2.24 8.11 -2.39 -0.02 2.22 16 31 H 0.08 2.73 7.06 -2.39 -0.02 2.71 16 32 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.27 13.41 8.31 -92.71 -0.77 12.64 16 34 H 0.09 4.57 7.88 -2.91 -0.02 4.54 16 35 H 0.14 4.35 8.06 -2.91 -0.02 4.33 16 36 H 0.15 3.93 8.06 -2.91 -0.02 3.90 16 37 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 38 H 0.11 4.69 7.96 -2.91 -0.02 4.66 16 39 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.10 4.25 5.02 -2.39 -0.01 4.24 16 41 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.10 2.59 8.06 -2.39 -0.02 2.57 16 Total: -1.00 -61.95 339.43 1.73 -60.21 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 0.99 Total: 27.65 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: 5.43 Total: -7.60 kcal Atomic # 7 Polarization: -85.73 SS G_CDS: -6.67 Total: -92.40 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -0.04 Total: -30.70 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -61.95 1.73 -60.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001540408446.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.065 kcal (2) G-P(sol) polarization free energy of solvation -61.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds