Wall clock time and date at job start Fri Apr 10 2020 19:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38247 * 120.00118 * 2 1 4 4 C 1.38220 * 119.99935 * 180.25660 * 3 2 1 5 5 C 1.38259 * 120.00048 * 359.51521 * 4 3 2 6 6 C 1.38213 * 119.99610 * 0.46281 * 5 4 3 7 7 C 1.38213 * 119.99785 * 179.97438 * 2 1 3 8 8 C 1.50699 * 119.99792 * 359.97438 * 7 2 1 9 9 N 1.46894 * 109.47402 * 284.57282 * 8 7 2 10 10 C 1.47906 * 111.00085 * 292.19635 * 9 8 7 11 11 C 1.50801 * 108.49815 * 153.79115 * 10 9 8 12 12 C 1.53697 * 112.10410 * 92.55432 * 11 10 9 13 13 N 1.48064 * 112.46681 * 318.54522 * 12 11 10 14 14 C 1.46901 * 111.00104 * 192.19781 * 13 12 11 15 15 C 1.50696 * 109.47331 * 297.69572 * 14 13 12 16 16 H 1.08009 * 119.99938 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00318 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00322 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99626 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.47072 * 90.00048 * 19 17 15 21 21 H 1.48501 * 109.46989 * 209.99678 * 19 17 15 22 22 H 1.48506 * 109.47306 * 329.99998 * 19 17 15 23 23 C 1.44572 * 113.86098 * 318.32415 * 13 12 11 24 24 C 1.40014 * 111.00155 * 164.22678 * 9 8 7 25 25 H 1.08997 * 109.47268 * 95.27230 * 1 2 3 26 26 H 1.08997 * 109.47489 * 215.27439 * 1 2 3 27 27 H 1.09004 * 109.46918 * 335.27847 * 1 2 3 28 28 H 1.07998 * 120.00210 * 359.97438 * 3 2 1 29 29 H 1.08001 * 120.00039 * 179.71980 * 4 3 2 30 30 H 1.07990 * 120.00320 * 180.25427 * 5 4 3 31 31 H 1.07998 * 119.99975 * 179.79238 * 6 5 4 32 32 H 1.09006 * 109.47271 * 44.57675 * 8 7 2 33 33 H 1.09003 * 109.47305 * 164.57512 * 8 7 2 34 34 H 1.09004 * 109.63295 * 273.49062 * 10 9 8 35 35 H 1.08997 * 109.63266 * 34.09052 * 10 9 8 36 36 H 1.09000 * 108.95755 * 331.87074 * 11 10 9 37 37 H 1.09002 * 108.88393 * 213.17980 * 11 10 9 38 38 H 1.09002 * 108.88272 * 197.78608 * 12 11 10 39 39 H 1.08998 * 108.88447 * 79.32076 * 12 11 10 40 40 H 1.08999 * 109.46687 * 57.69567 * 14 13 12 41 41 H 1.09000 * 109.47113 * 177.69316 * 14 13 12 42 42 H 0.97001 * 120.00007 * 180.02562 * 18 17 15 43 43 H 1.09000 * 109.57121 * 334.41815 * 23 13 12 44 44 H 1.08994 * 109.68058 * 214.10325 * 23 13 12 45 45 H 1.08999 * 108.96005 * 308.76869 * 24 9 8 46 46 H 1.09000 * 108.95843 * 67.51304 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5804 1.1972 -0.0054 5 6 4.2717 -0.0001 -0.0006 6 6 3.5806 -1.1971 -0.0001 7 6 2.1980 -1.1970 0.0005 8 6 1.4444 -2.5020 0.0017 9 7 0.8983 -2.7510 1.3424 10 6 1.9810 -3.0114 2.3158 11 6 1.4930 -2.6243 3.6892 12 6 0.8677 -3.8126 4.4370 13 7 0.0157 -4.6479 3.5602 14 6 -0.7881 -5.5903 4.3500 15 6 0.1259 -6.5297 5.0937 16 1 1.1970 -6.4362 4.9897 17 6 -0.4049 -7.5084 5.9070 18 7 0.3927 -8.3285 6.5556 19 14 -2.2572 -7.6704 6.0862 20 1 -2.7754 -8.5992 5.0498 21 1 -2.5792 -8.2037 7.4343 22 1 -2.8894 -6.3374 5.9171 23 6 -0.8177 -3.8864 2.6570 24 6 -0.0879 -3.7442 1.3061 25 1 -0.3633 -0.0944 -1.0233 26 1 -0.3634 -0.8389 0.5934 27 1 -0.3633 0.9335 0.4298 28 1 1.6583 2.1326 -0.0004 29 1 4.1205 2.1325 -0.0099 30 1 5.3516 -0.0002 -0.0006 31 1 4.1205 -2.1324 0.0002 32 1 0.6285 -2.4511 -0.7193 33 1 2.1205 -3.3123 -0.2714 34 1 2.2375 -4.0708 2.3035 35 1 2.8569 -2.4165 2.0573 36 1 0.7470 -1.8357 3.5907 37 1 2.3346 -2.2447 4.2686 38 1 0.2615 -3.4324 5.2593 39 1 1.6661 -4.4314 4.8465 40 1 -1.3993 -5.0374 5.0633 41 1 -1.4344 -6.1629 3.6848 42 1 0.0192 -9.0173 7.1274 43 1 -1.0036 -2.8981 3.0774 44 1 -1.7653 -4.4038 2.5076 45 1 -0.8161 -3.4922 0.5351 46 1 0.3781 -4.6969 1.0548 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042146234.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:45 Heat of formation + Delta-G solvation = 39.334854 kcal Electronic energy + Delta-G solvation = -23415.626119 eV Core-core repulsion = 20305.039081 eV Total energy + Delta-G solvation = -3110.587038 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.98950 -38.59448 -35.83914 -33.03194 -32.51286 -32.03167 -31.63017 -28.87213 -27.21412 -26.44817 -25.34842 -24.29777 -22.03744 -21.60901 -20.82363 -20.15225 -19.13337 -16.75571 -16.46231 -16.05858 -15.79808 -15.21930 -15.08431 -14.56236 -14.42614 -14.08136 -13.70204 -13.38222 -13.23590 -13.00768 -12.70062 -12.56230 -12.33216 -12.18732 -12.10371 -11.94553 -11.69064 -11.42149 -11.05722 -10.96555 -10.93828 -10.76999 -10.65359 -10.35020 -10.19308 -10.00877 -9.76356 -9.22796 -8.85359 -8.60944 -8.55684 -7.96052 -7.18558 -6.04020 -4.01030 1.29622 1.34785 3.28739 3.36217 3.38282 3.64393 4.26693 4.42852 4.74590 4.76865 4.81986 4.92209 4.98192 5.19970 5.27054 5.29858 5.32265 5.44508 5.53183 5.58173 5.62734 5.64062 5.69799 5.74028 5.82790 5.87847 6.01344 6.02299 6.11302 6.17540 6.22485 6.29077 6.42673 6.43678 6.44776 6.52419 6.62771 6.67101 6.74275 6.90621 6.97139 7.07242 7.34789 7.60758 7.66913 8.00051 8.20174 8.71164 9.04563 9.58197 11.09170 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.032633 B = 0.003498 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.810120 B = 8002.453683 C = 8363.307198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.059 4.059 3 C -0.127 4.127 4 C -0.121 4.121 5 C -0.130 4.130 6 C -0.111 4.111 7 C -0.073 4.073 8 C 0.097 3.903 9 N -0.543 5.543 10 C 0.072 3.928 11 C -0.118 4.118 12 C 0.076 3.924 13 N -0.544 5.544 14 C 0.168 3.832 15 C -0.508 4.508 16 H 0.080 0.920 17 C 0.067 3.933 18 N -0.902 5.902 19 Si 0.875 3.125 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.268 1.268 23 C 0.064 3.936 24 C 0.075 3.925 25 H 0.062 0.938 26 H 0.089 0.911 27 H 0.058 0.942 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.079 0.921 33 H 0.041 0.959 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.024 0.976 39 H 0.077 0.923 40 H -0.014 1.014 41 H 0.023 0.977 42 H 0.263 0.737 43 H 0.040 0.960 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.829 18.031 -14.601 23.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.060 4.060 3 C -0.145 4.145 4 C -0.139 4.139 5 C -0.148 4.148 6 C -0.130 4.130 7 C -0.074 4.074 8 C -0.029 4.029 9 N -0.268 5.268 10 C -0.055 4.055 11 C -0.156 4.156 12 C -0.052 4.052 13 N -0.268 5.268 14 C 0.042 3.958 15 C -0.546 4.546 16 H 0.098 0.902 17 C -0.134 4.134 18 N -0.541 5.541 19 Si 0.702 3.298 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.193 1.193 23 C -0.066 4.066 24 C -0.055 4.055 25 H 0.081 0.919 26 H 0.108 0.892 27 H 0.077 0.923 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.042 0.958 39 H 0.095 0.905 40 H 0.004 0.996 41 H 0.041 0.959 42 H 0.073 0.927 43 H 0.058 0.942 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 2.877 17.984 -14.582 23.331 hybrid contribution -1.039 -0.453 0.493 1.236 sum 1.838 17.531 -14.089 22.566 Atomic orbital electron populations 1.20888 0.91177 1.03663 1.01978 1.19738 0.96226 0.92216 0.97786 1.21034 0.94230 0.97454 1.01738 1.21081 0.94351 0.97858 1.00652 1.21053 0.99631 0.92550 1.01523 1.21083 0.93717 0.98081 1.00096 1.19687 0.93174 0.94649 0.99878 1.20953 0.97711 0.93022 0.91261 1.59249 1.14319 1.47222 1.05978 1.21747 0.92088 1.00297 0.91338 1.21462 1.00329 0.98316 0.95486 1.22214 0.97048 0.92784 0.93136 1.60601 1.25265 1.18898 1.22077 1.20195 0.92940 0.91003 0.91699 1.21075 0.95169 1.13322 1.25080 0.90238 1.24910 0.97591 0.95515 0.95394 1.69893 1.34718 1.19248 1.30221 0.86868 0.86659 0.78692 0.77568 1.20195 1.21261 1.19295 1.21829 0.94871 0.96854 0.93003 1.21030 0.93703 0.92945 0.97779 0.91910 0.89207 0.92261 0.86454 0.86518 0.86418 0.86329 0.90288 0.94109 0.92731 0.91696 0.91754 0.91981 0.95775 0.90509 0.99639 0.95918 0.92723 0.94198 0.91770 0.92065 0.94985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 9.21 36.01 0.33 -0.85 16 2 C -0.06 -0.65 5.88 -104.63 -0.62 -1.27 16 3 C -0.13 -1.29 9.68 -39.58 -0.38 -1.67 16 4 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 5 C -0.13 -1.29 10.05 -39.58 -0.40 -1.69 16 6 C -0.11 -1.21 8.48 -39.58 -0.34 -1.54 16 7 C -0.07 -0.84 4.64 -104.62 -0.49 -1.33 16 8 C 0.10 1.13 4.25 -4.98 -0.02 1.11 16 9 N -0.54 -7.34 3.01 -241.21 -0.73 -8.07 16 10 C 0.07 1.06 5.15 -4.37 -0.02 1.04 16 11 C -0.12 -1.84 5.36 -27.47 -0.15 -1.99 16 12 C 0.08 1.47 4.99 -2.82 -0.01 1.46 16 13 N -0.54 -11.27 3.96 -235.76 -0.93 -12.21 16 14 C 0.17 4.08 3.64 -4.98 -0.02 4.06 16 15 C -0.51 -14.46 9.17 -34.44 -0.32 -14.77 16 16 H 0.08 2.46 7.12 -52.48 -0.37 2.09 16 17 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 18 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 19 Si 0.87 21.60 27.47 -169.99 -4.67 16.93 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 23 C 0.06 1.10 5.45 -4.44 -0.02 1.07 16 24 C 0.08 1.10 5.03 -6.75 -0.03 1.07 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.09 1.00 6.38 -51.93 -0.33 0.67 16 27 H 0.06 0.53 8.05 -51.93 -0.42 0.11 16 28 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 29 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 30 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.12 1.18 8.00 -52.49 -0.42 0.76 16 32 H 0.08 0.84 7.20 -51.93 -0.37 0.46 16 33 H 0.04 0.48 7.92 -51.93 -0.41 0.07 16 34 H 0.05 0.93 7.57 -51.93 -0.39 0.54 16 35 H 0.06 0.89 6.00 -51.93 -0.31 0.58 16 36 H 0.06 1.01 7.23 -51.93 -0.38 0.63 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.02 0.49 7.97 -51.93 -0.41 0.07 16 39 H 0.08 1.66 7.00 -51.93 -0.36 1.29 16 40 H -0.01 -0.35 7.11 -51.93 -0.37 -0.72 16 41 H 0.02 0.55 7.22 -51.93 -0.37 0.18 16 42 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.04 0.67 6.93 -51.93 -0.36 0.31 16 44 H 0.06 1.08 7.41 -51.93 -0.38 0.70 16 45 H 0.06 0.77 7.76 -51.93 -0.40 0.36 16 46 H 0.03 0.53 8.06 -51.93 -0.42 0.11 16 LS Contribution 349.35 15.07 5.26 5.26 Total: -1.00 -30.38 349.35 -11.05 -41.43 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -7.78 Total: -1.38 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -2.98 Total: -15.01 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: -0.89 Total: -47.24 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.38 -11.05 -41.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042146234.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.765 kcal (2) G-P(sol) polarization free energy of solvation -30.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds