Wall clock time and date at job start Fri Apr 10 2020 19:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38247 * 120.00118 * 2 1 4 4 C 1.38220 * 119.99935 * 180.25660 * 3 2 1 5 5 C 1.38259 * 120.00048 * 359.51521 * 4 3 2 6 6 C 1.38213 * 119.99610 * 0.46281 * 5 4 3 7 7 C 1.38213 * 119.99785 * 179.97438 * 2 1 3 8 8 C 1.50699 * 119.99792 * 359.97438 * 7 2 1 9 9 N 1.46894 * 109.47402 * 284.57282 * 8 7 2 10 10 C 1.47906 * 111.00085 * 292.19635 * 9 8 7 11 11 C 1.50801 * 108.49815 * 153.79115 * 10 9 8 12 12 C 1.53697 * 112.10410 * 92.55432 * 11 10 9 13 13 N 1.48064 * 112.46681 * 318.54522 * 12 11 10 14 14 C 1.46901 * 111.00104 * 192.19781 * 13 12 11 15 15 C 1.50696 * 109.47331 * 297.69572 * 14 13 12 16 16 H 1.08009 * 119.99938 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00318 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00322 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99626 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.47072 * 90.00048 * 19 17 15 21 21 H 1.48501 * 109.46989 * 209.99678 * 19 17 15 22 22 H 1.48506 * 109.47306 * 329.99998 * 19 17 15 23 23 C 1.44572 * 113.86098 * 318.32415 * 13 12 11 24 24 C 1.40014 * 111.00155 * 164.22678 * 9 8 7 25 25 H 1.08997 * 109.47268 * 95.27230 * 1 2 3 26 26 H 1.08997 * 109.47489 * 215.27439 * 1 2 3 27 27 H 1.09004 * 109.46918 * 335.27847 * 1 2 3 28 28 H 1.07998 * 120.00210 * 359.97438 * 3 2 1 29 29 H 1.08001 * 120.00039 * 179.71980 * 4 3 2 30 30 H 1.07990 * 120.00320 * 180.25427 * 5 4 3 31 31 H 1.07998 * 119.99975 * 179.79238 * 6 5 4 32 32 H 1.09006 * 109.47271 * 44.57675 * 8 7 2 33 33 H 1.09003 * 109.47305 * 164.57512 * 8 7 2 34 34 H 1.09004 * 109.63295 * 273.49062 * 10 9 8 35 35 H 1.08997 * 109.63266 * 34.09052 * 10 9 8 36 36 H 1.09000 * 108.95755 * 331.87074 * 11 10 9 37 37 H 1.09002 * 108.88393 * 213.17980 * 11 10 9 38 38 H 1.09002 * 108.88272 * 197.78608 * 12 11 10 39 39 H 1.08998 * 108.88447 * 79.32076 * 12 11 10 40 40 H 1.08999 * 109.46687 * 57.69567 * 14 13 12 41 41 H 1.09000 * 109.47113 * 177.69316 * 14 13 12 42 42 H 0.97001 * 120.00007 * 180.02562 * 18 17 15 43 43 H 1.09000 * 109.57121 * 334.41815 * 23 13 12 44 44 H 1.08994 * 109.68058 * 214.10325 * 23 13 12 45 45 H 1.08999 * 108.96005 * 308.76869 * 24 9 8 46 46 H 1.09000 * 108.95843 * 67.51304 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5804 1.1972 -0.0054 5 6 4.2717 -0.0001 -0.0006 6 6 3.5806 -1.1971 -0.0001 7 6 2.1980 -1.1970 0.0005 8 6 1.4444 -2.5020 0.0017 9 7 0.8983 -2.7510 1.3424 10 6 1.9810 -3.0114 2.3158 11 6 1.4930 -2.6243 3.6892 12 6 0.8677 -3.8126 4.4370 13 7 0.0157 -4.6479 3.5602 14 6 -0.7881 -5.5903 4.3500 15 6 0.1259 -6.5297 5.0937 16 1 1.1970 -6.4362 4.9897 17 6 -0.4049 -7.5084 5.9070 18 7 0.3927 -8.3285 6.5556 19 14 -2.2572 -7.6704 6.0862 20 1 -2.7754 -8.5992 5.0498 21 1 -2.5792 -8.2037 7.4343 22 1 -2.8894 -6.3374 5.9171 23 6 -0.8177 -3.8864 2.6570 24 6 -0.0879 -3.7442 1.3061 25 1 -0.3633 -0.0944 -1.0233 26 1 -0.3634 -0.8389 0.5934 27 1 -0.3633 0.9335 0.4298 28 1 1.6583 2.1326 -0.0004 29 1 4.1205 2.1325 -0.0099 30 1 5.3516 -0.0002 -0.0006 31 1 4.1205 -2.1324 0.0002 32 1 0.6285 -2.4511 -0.7193 33 1 2.1205 -3.3123 -0.2714 34 1 2.2375 -4.0708 2.3035 35 1 2.8569 -2.4165 2.0573 36 1 0.7470 -1.8357 3.5907 37 1 2.3346 -2.2447 4.2686 38 1 0.2615 -3.4324 5.2593 39 1 1.6661 -4.4314 4.8465 40 1 -1.3993 -5.0374 5.0633 41 1 -1.4344 -6.1629 3.6848 42 1 0.0192 -9.0173 7.1274 43 1 -1.0036 -2.8981 3.0774 44 1 -1.7653 -4.4038 2.5076 45 1 -0.8161 -3.4922 0.5351 46 1 0.3781 -4.6969 1.0548 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042146234.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:44 Heat of formation + Delta-G solvation = 21.953633 kcal Electronic energy + Delta-G solvation = -23416.379826 eV Core-core repulsion = 20305.039081 eV Total energy + Delta-G solvation = -3111.340745 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.95870 -39.74121 -37.25445 -34.74734 -33.73459 -33.34307 -32.62620 -30.47223 -28.36104 -27.49951 -26.87941 -25.42673 -23.51117 -22.81520 -21.86045 -21.20721 -20.64247 -18.89431 -17.46405 -17.13743 -16.93137 -16.36470 -16.33552 -16.01723 -15.78437 -15.45868 -15.06200 -14.51422 -14.28921 -14.24204 -14.06094 -13.91851 -13.67638 -13.54632 -13.10503 -12.90845 -12.82464 -12.76369 -12.58259 -12.47671 -12.12791 -11.94473 -11.88147 -11.74198 -11.71154 -11.56259 -11.43517 -11.27430 -10.78291 -9.63872 -9.39232 -9.09469 -8.85951 -8.28709 -6.32135 0.51404 0.58310 1.33936 1.35484 1.46250 2.33832 2.80444 3.04148 3.18838 3.27074 3.89644 3.97926 4.01691 4.16288 4.21275 4.22112 4.28849 4.31021 4.43721 4.52616 4.59561 4.62688 4.65603 4.75453 4.78900 4.82366 4.91815 4.94065 4.97972 4.98764 5.06078 5.10762 5.12739 5.14384 5.23561 5.26710 5.38057 5.50792 5.54238 5.66861 5.70085 5.87470 6.03691 6.19749 6.23460 6.40378 6.54440 6.73446 6.81303 7.31878 8.87956 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.032633 B = 0.003498 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.810120 B = 8002.453683 C = 8363.307198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.071 4.071 3 C -0.135 4.135 4 C -0.124 4.124 5 C -0.137 4.137 6 C -0.124 4.124 7 C -0.088 4.088 8 C 0.101 3.899 9 N -0.538 5.538 10 C 0.079 3.921 11 C -0.104 4.104 12 C 0.080 3.920 13 N -0.555 5.555 14 C 0.178 3.822 15 C -0.516 4.516 16 H 0.035 0.965 17 C 0.006 3.994 18 N -0.949 5.949 19 Si 0.949 3.051 20 H -0.264 1.264 21 H -0.282 1.282 22 H -0.252 1.252 23 C 0.062 3.938 24 C 0.085 3.915 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.134 0.866 29 H 0.138 0.862 30 H 0.134 0.866 31 H 0.121 0.879 32 H 0.093 0.907 33 H 0.036 0.964 34 H 0.025 0.975 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.014 0.986 39 H 0.041 0.959 40 H -0.016 1.016 41 H 0.029 0.971 42 H 0.266 0.734 43 H 0.048 0.952 44 H 0.070 0.930 45 H 0.092 0.908 46 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.307 20.217 -16.102 25.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.071 4.071 3 C -0.153 4.153 4 C -0.142 4.142 5 C -0.155 4.155 6 C -0.143 4.143 7 C -0.088 4.088 8 C -0.025 4.025 9 N -0.262 5.262 10 C -0.048 4.048 11 C -0.142 4.142 12 C -0.047 4.047 13 N -0.280 5.280 14 C 0.051 3.949 15 C -0.554 4.554 16 H 0.053 0.947 17 C -0.191 4.191 18 N -0.590 5.590 19 Si 0.772 3.228 20 H -0.189 1.189 21 H -0.208 1.208 22 H -0.176 1.176 23 C -0.067 4.067 24 C -0.045 4.045 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.152 0.848 29 H 0.156 0.844 30 H 0.152 0.848 31 H 0.139 0.861 32 H 0.111 0.889 33 H 0.055 0.945 34 H 0.044 0.956 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.032 0.968 39 H 0.060 0.940 40 H 0.001 0.999 41 H 0.047 0.953 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.110 0.890 46 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 1.361 20.196 -16.112 25.872 hybrid contribution -0.428 -1.087 0.930 1.494 sum 0.933 19.109 -15.182 24.424 Atomic orbital electron populations 1.20859 0.90404 1.03540 1.02508 1.19958 0.96961 0.92364 0.97857 1.21313 0.94672 0.97922 1.01344 1.21405 0.94489 0.98682 0.99652 1.21321 1.00662 0.92403 1.01110 1.21238 0.93810 0.98729 1.00478 1.19704 0.93437 0.94595 1.01113 1.20961 0.98147 0.93233 0.90153 1.59267 1.13730 1.46246 1.06943 1.21622 0.93103 0.98662 0.91399 1.21356 1.00718 0.96419 0.95741 1.22137 0.95851 0.93291 0.93434 1.60524 1.25680 1.19847 1.21981 1.19967 0.92286 0.91033 0.91645 1.21296 0.93902 1.14467 1.25766 0.94672 1.25873 1.03370 0.94972 0.94869 1.70054 1.37360 1.20263 1.31339 0.85690 0.79642 0.79557 0.77886 1.18870 1.20798 1.17552 1.21959 0.94934 0.96601 0.93168 1.20929 0.94334 0.92309 0.96956 0.90800 0.90422 0.91460 0.84765 0.84380 0.84774 0.86138 0.88880 0.94527 0.95635 0.90279 0.90928 0.90583 0.96772 0.94000 0.99863 0.95263 0.92469 0.93422 0.91150 0.88992 0.97201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.97 9.21 71.24 0.66 -1.32 16 2 C -0.07 -1.40 5.88 -19.87 -0.12 -1.52 16 3 C -0.13 -2.39 9.68 22.27 0.22 -2.17 16 4 C -0.12 -2.09 10.05 22.27 0.22 -1.86 16 5 C -0.14 -2.46 10.05 22.27 0.22 -2.23 16 6 C -0.12 -2.52 8.48 22.27 0.19 -2.33 16 7 C -0.09 -1.86 4.64 -19.87 -0.09 -1.95 16 8 C 0.10 2.19 4.25 85.56 0.36 2.55 16 9 N -0.54 -13.73 3.01 -917.04 -2.76 -16.50 16 10 C 0.08 2.31 5.15 85.40 0.44 2.75 16 11 C -0.10 -3.20 5.36 30.11 0.16 -3.04 16 12 C 0.08 3.22 4.99 86.31 0.43 3.65 16 13 N -0.56 -23.27 3.96 -899.80 -3.56 -26.83 16 14 C 0.18 8.67 3.64 85.56 0.31 8.98 16 15 C -0.52 -30.43 9.17 25.60 0.23 -30.19 16 16 H 0.03 2.32 7.12 -2.91 -0.02 2.30 16 17 C 0.01 0.37 5.47 84.66 0.46 0.83 16 18 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 19 Si 0.95 44.55 27.47 68.60 1.88 46.44 16 20 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 21 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 22 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 23 C 0.06 2.04 5.45 87.15 0.47 2.52 16 24 C 0.08 2.35 5.03 87.95 0.44 2.79 16 25 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.08 1.51 6.38 -2.39 -0.02 1.50 16 27 H 0.07 1.01 8.05 -2.38 -0.02 0.99 16 28 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 29 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 30 H 0.13 1.86 8.06 -2.92 -0.02 1.84 16 31 H 0.12 2.29 8.00 -2.91 -0.02 2.27 16 32 H 0.09 1.74 7.20 -2.38 -0.02 1.73 16 33 H 0.04 0.83 7.92 -2.39 -0.02 0.81 16 34 H 0.03 0.89 7.57 -2.38 -0.02 0.88 16 35 H 0.08 2.10 6.00 -2.39 -0.01 2.08 16 36 H 0.07 2.15 7.23 -2.39 -0.02 2.13 16 37 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.01 0.58 7.97 -2.39 -0.02 0.56 16 39 H 0.04 1.93 7.00 -2.39 -0.02 1.92 16 40 H -0.02 -0.80 7.11 -2.39 -0.02 -0.81 16 41 H 0.03 1.39 7.22 -2.39 -0.02 1.38 16 42 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 43 H 0.05 1.51 6.93 -2.39 -0.02 1.49 16 44 H 0.07 2.22 7.41 -2.39 -0.02 2.21 16 45 H 0.09 2.02 7.76 -2.39 -0.02 2.00 16 46 H 0.01 0.32 8.06 -2.39 -0.02 0.30 16 Total: -1.00 -67.41 349.35 1.36 -66.05 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 0.88 Total: 13.30 kcal Atomic # 6 Polarization: -27.17 SS G_CDS: 4.62 Total: -22.55 kcal Atomic # 7 Polarization: -97.21 SS G_CDS: -6.02 Total: -103.23 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.88 Total: 46.44 kcal Total: -67.41 1.36 -66.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042146234.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.004 kcal (2) G-P(sol) polarization free energy of solvation -67.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds