Wall clock time and date at job start Fri Apr 10 2020 19:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99802 * 2 1 4 4 H 1.48504 * 109.47306 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47213 * 299.99779 * 3 2 1 6 6 H 1.48502 * 109.47093 * 59.99885 * 3 2 1 7 7 C 1.37880 * 120.00281 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99959 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99837 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47396 * 179.97438 * 9 7 2 11 11 C 1.46898 * 110.99613 * 78.48721 * 10 9 7 12 12 C 1.50699 * 109.47498 * 293.95774 * 11 10 9 13 13 C 1.38226 * 119.61958 * 95.00308 * 12 11 10 14 14 C 1.38629 * 119.16463 * 179.97438 * 13 12 11 15 15 C 1.38676 * 118.41747 * 0.02562 * 14 13 12 16 16 C 1.38183 * 119.16228 * 359.97438 * 15 14 13 17 17 N 1.31850 * 119.61811 * 274.72399 * 12 11 10 18 18 C 1.46894 * 111.00322 * 202.44405 * 10 9 7 19 19 C 1.53003 * 109.46900 * 75.91507 * 18 10 9 20 20 C 1.53003 * 109.47115 * 184.98114 * 19 18 10 21 21 C 1.52994 * 109.47011 * 179.97438 * 20 19 18 22 22 C 1.53004 * 109.47275 * 60.00363 * 21 20 19 23 23 C 1.53003 * 109.46804 * 299.99763 * 22 21 20 24 24 C 1.52994 * 109.47011 * 60.00075 * 23 22 21 25 25 H 0.96995 * 120.00074 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47615 * 59.99626 * 9 7 2 27 27 H 1.09001 * 109.47059 * 299.99580 * 9 7 2 28 28 H 1.08999 * 109.47374 * 53.96286 * 11 10 9 29 29 H 1.09002 * 109.46695 * 173.95523 * 11 10 9 30 30 H 1.07996 * 120.41555 * 359.95403 * 13 12 11 31 31 H 1.07998 * 120.79102 * 180.02562 * 14 13 12 32 32 H 1.08000 * 120.41907 * 180.02562 * 15 14 13 33 33 H 1.08003 * 119.61255 * 180.02562 * 16 15 14 34 34 H 1.08998 * 109.47262 * 195.91419 * 18 10 9 35 35 H 1.08993 * 109.47235 * 315.91947 * 18 10 9 36 36 H 1.09001 * 109.47077 * 304.98041 * 19 18 10 37 37 H 1.09003 * 109.46736 * 300.00326 * 20 19 18 38 38 H 1.08997 * 109.46788 * 59.99856 * 20 19 18 39 39 H 1.09003 * 109.47652 * 299.99784 * 21 20 19 40 40 H 1.09007 * 109.47091 * 179.97438 * 21 20 19 41 41 H 1.09000 * 109.47185 * 179.97438 * 22 21 20 42 42 H 1.09004 * 109.46938 * 59.99886 * 22 21 20 43 43 H 1.09001 * 109.47088 * 300.00135 * 23 22 21 44 44 H 1.08997 * 109.46788 * 180.02562 * 23 22 21 45 45 H 1.09007 * 109.47091 * 180.02562 * 24 23 22 46 46 H 1.08993 * 109.47760 * 60.00067 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 2.7558 -3.8379 1.3444 12 6 3.5923 -2.6510 1.7474 13 6 3.0264 -1.6413 2.5030 14 6 3.8047 -0.5541 2.8690 15 6 5.1291 -0.5226 2.4589 16 6 5.6255 -1.5689 1.7050 17 7 4.8571 -2.5903 1.3799 18 6 1.5844 -4.8395 -0.5230 19 6 1.4734 -4.7437 -2.0460 20 6 0.7155 -5.9610 -2.5797 21 6 0.6039 -5.8648 -4.1025 22 6 2.0054 -5.8279 -4.7153 23 6 2.7634 -4.6106 -4.1816 24 6 2.8749 -4.7068 -2.6588 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8903 28 1 1.9390 -3.9649 2.0549 29 1 3.3757 -4.7345 1.3395 30 1 1.9908 -1.6986 2.8041 31 1 3.3895 0.2493 3.4593 32 1 5.7647 0.3086 2.7261 33 1 6.6560 -1.5521 1.3821 34 1 2.1973 -5.7007 -0.2569 35 1 0.5896 -4.9547 -0.0928 36 1 0.9357 -3.8344 -2.3146 37 1 1.2532 -6.8702 -2.3110 38 1 -0.2830 -5.9871 -2.1435 39 1 0.0659 -4.9556 -4.3709 40 1 0.0643 -6.7323 -4.4828 41 1 1.9259 -5.7598 -5.8003 42 1 2.5433 -6.7372 -4.4470 43 1 2.2254 -3.7014 -4.4498 44 1 3.7616 -4.5840 -4.6185 45 1 3.4145 -3.8393 -2.2785 46 1 3.4128 -5.6159 -2.3904 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081158733.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:12 Heat of formation + Delta-G solvation = 16.596634 kcal Electronic energy + Delta-G solvation = -23957.481710 eV Core-core repulsion = 20845.908668 eV Total energy + Delta-G solvation = -3111.573041 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.54928 -38.46456 -36.17376 -32.65797 -32.00143 -31.48167 -30.39270 -30.03247 -27.45989 -25.92910 -23.67101 -22.72382 -22.26918 -22.05158 -20.76714 -19.77220 -19.14322 -16.50933 -16.13294 -15.55877 -15.22037 -14.83288 -14.56734 -14.50451 -14.08917 -13.81129 -13.58104 -13.35774 -12.85769 -12.74916 -12.56332 -12.09763 -11.99076 -11.78972 -11.76218 -11.45241 -11.27222 -11.09147 -10.87591 -10.76939 -10.66276 -10.53549 -10.42162 -9.99664 -9.70713 -9.65880 -9.56451 -9.23602 -9.01455 -8.65974 -8.47312 -7.99938 -7.22642 -6.02631 -3.97120 1.90756 2.10681 3.27263 3.36357 3.43470 4.38326 4.49461 4.96516 5.03622 5.04183 5.11953 5.25691 5.34472 5.48101 5.51634 5.52392 5.65948 5.76114 5.79534 5.86794 5.88654 5.91136 5.94417 5.96497 6.04239 6.09594 6.17716 6.27314 6.27740 6.35460 6.41738 6.45584 6.50896 6.57230 6.59329 6.71539 6.88284 6.96712 7.00180 7.06197 7.20275 7.32149 7.48298 7.86576 8.13295 8.18937 8.54915 8.81772 9.08034 9.62516 11.07478 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.015563 B = 0.005674 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.709007 B = 4933.641648 C = 5686.618565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.059 3.941 3 Si 0.878 3.122 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.484 4.484 8 H 0.066 0.934 9 C 0.189 3.811 10 N -0.525 5.525 11 C 0.115 3.885 12 C 0.166 3.834 13 C -0.100 4.100 14 C -0.094 4.094 15 C -0.182 4.182 16 C 0.078 3.922 17 N -0.474 5.474 18 C 0.064 3.936 19 C -0.078 4.078 20 C -0.113 4.113 21 C -0.117 4.117 22 C -0.117 4.117 23 C -0.121 4.121 24 C -0.100 4.100 25 H 0.259 0.741 26 H 0.031 0.969 27 H -0.008 1.008 28 H 0.035 0.965 29 H 0.072 0.928 30 H 0.126 0.874 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.141 0.859 34 H 0.057 0.943 35 H 0.024 0.976 36 H 0.076 0.924 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.056 0.944 43 H 0.060 0.940 44 H 0.054 0.946 45 H 0.081 0.919 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.494 -8.641 -0.403 9.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.142 4.142 3 Si 0.706 3.294 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.522 4.522 8 H 0.084 0.916 9 C 0.064 3.936 10 N -0.250 5.250 11 C -0.013 4.013 12 C 0.026 3.974 13 C -0.121 4.121 14 C -0.120 4.120 15 C -0.202 4.202 16 C -0.078 4.078 17 N -0.184 5.184 18 C -0.064 4.064 19 C -0.097 4.097 20 C -0.151 4.151 21 C -0.155 4.155 22 C -0.154 4.154 23 C -0.158 4.158 24 C -0.138 4.138 25 H 0.068 0.932 26 H 0.049 0.951 27 H 0.010 0.990 28 H 0.053 0.947 29 H 0.090 0.910 30 H 0.144 0.856 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.158 0.842 34 H 0.076 0.924 35 H 0.042 0.958 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.099 0.901 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.088 -9.080 -1.202 10.477 hybrid contribution -0.761 1.837 0.886 2.177 sum 4.328 -7.243 -0.316 8.443 Atomic orbital electron populations 1.69955 1.05891 1.26385 1.51555 1.24863 0.94601 0.98768 0.95986 0.86714 0.80802 0.84364 0.77528 1.19289 1.21235 1.21102 1.21291 0.93691 0.89534 1.47725 0.91567 1.19861 0.89822 0.87696 0.96218 1.62044 1.37721 1.05055 1.20161 1.20763 0.95433 0.94200 0.90927 1.20714 0.90004 0.95208 0.91429 1.21718 0.99724 0.93734 0.96906 1.21309 0.93820 0.97651 0.99210 1.21875 0.96610 1.00098 1.01663 1.22381 0.99118 0.90311 0.96009 1.67350 1.05904 1.25907 1.19249 1.22033 0.96648 0.92799 0.94930 1.21101 0.96514 0.97953 0.94147 1.21558 0.99944 0.98442 0.95133 1.21500 0.96855 1.01269 0.95831 1.21527 0.96173 0.98701 0.99025 1.21560 0.99419 0.97832 0.97012 1.21397 0.96692 1.02327 0.93344 0.93175 0.95068 0.99048 0.94674 0.90986 0.85596 0.86223 0.86354 0.84165 0.92412 0.95799 0.90567 0.92539 0.92545 0.92063 0.92788 0.92897 0.92511 0.92128 0.92771 0.90060 0.93312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.77 13.29 55.43 0.74 -25.03 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.88 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.48 -12.83 6.14 -34.44 -0.21 -13.04 16 8 H 0.07 1.84 6.16 -52.49 -0.32 1.51 16 9 C 0.19 4.64 4.40 -4.98 -0.02 4.61 16 10 N -0.53 -10.83 3.88 -237.52 -0.92 -11.75 16 11 C 0.12 2.20 5.24 -4.98 -0.03 2.18 16 12 C 0.17 3.36 4.11 -82.59 -0.34 3.02 16 13 C -0.10 -2.01 7.00 -39.44 -0.28 -2.29 16 14 C -0.09 -1.74 10.18 -39.28 -0.40 -2.14 16 15 C -0.18 -3.15 10.11 -39.44 -0.40 -3.55 16 16 C 0.08 1.40 11.18 -17.55 -0.20 1.21 16 17 N -0.47 -9.58 10.24 -9.47 -0.10 -9.67 16 18 C 0.06 1.12 4.35 -3.83 -0.02 1.10 16 19 C -0.08 -1.29 2.23 -90.61 -0.20 -1.49 16 20 C -0.11 -1.53 5.20 -26.73 -0.14 -1.67 16 21 C -0.12 -1.47 5.92 -26.73 -0.16 -1.63 16 22 C -0.12 -1.44 5.92 -26.73 -0.16 -1.59 16 23 C -0.12 -1.72 5.92 -26.73 -0.16 -1.88 16 24 C -0.10 -1.62 5.09 -26.73 -0.14 -1.75 16 25 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.03 0.83 6.44 -51.93 -0.33 0.50 16 27 H -0.01 -0.22 7.82 -51.93 -0.41 -0.62 16 28 H 0.04 0.64 7.84 -51.93 -0.41 0.24 16 29 H 0.07 1.26 7.83 -51.93 -0.41 0.85 16 30 H 0.13 2.56 8.06 -52.49 -0.42 2.14 16 31 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 32 H 0.12 1.69 8.06 -52.49 -0.42 1.26 16 33 H 0.14 2.08 8.06 -52.48 -0.42 1.65 16 34 H 0.06 0.91 7.73 -51.93 -0.40 0.51 16 35 H 0.02 0.42 8.00 -51.93 -0.42 0.01 16 36 H 0.08 1.49 6.69 -51.93 -0.35 1.14 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.08 1.57 7.75 -51.92 -0.40 1.17 16 46 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 356.79 15.07 5.38 5.38 Total: -1.00 -28.94 356.79 -10.94 -39.88 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -8.08 Total: 2.05 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -2.94 Total: -17.41 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: -0.28 Total: -46.46 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.94 -10.94 -39.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081158733.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.473 kcal (2) G-P(sol) polarization free energy of solvation -28.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds