Wall clock time and date at job start Fri Apr 10 2020 19:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99802 * 2 1 4 4 H 1.48504 * 109.47306 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47213 * 299.99779 * 3 2 1 6 6 H 1.48502 * 109.47093 * 59.99885 * 3 2 1 7 7 C 1.37880 * 120.00281 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99959 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99837 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47396 * 179.97438 * 9 7 2 11 11 C 1.46898 * 110.99613 * 78.48721 * 10 9 7 12 12 C 1.50699 * 109.47498 * 293.95774 * 11 10 9 13 13 C 1.38226 * 119.61958 * 95.00308 * 12 11 10 14 14 C 1.38629 * 119.16463 * 179.97438 * 13 12 11 15 15 C 1.38676 * 118.41747 * 0.02562 * 14 13 12 16 16 C 1.38183 * 119.16228 * 359.97438 * 15 14 13 17 17 N 1.31850 * 119.61811 * 274.72399 * 12 11 10 18 18 C 1.46894 * 111.00322 * 202.44405 * 10 9 7 19 19 C 1.53003 * 109.46900 * 75.91507 * 18 10 9 20 20 C 1.53003 * 109.47115 * 184.98114 * 19 18 10 21 21 C 1.52994 * 109.47011 * 179.97438 * 20 19 18 22 22 C 1.53004 * 109.47275 * 60.00363 * 21 20 19 23 23 C 1.53003 * 109.46804 * 299.99763 * 22 21 20 24 24 C 1.52994 * 109.47011 * 60.00075 * 23 22 21 25 25 H 0.96995 * 120.00074 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47615 * 59.99626 * 9 7 2 27 27 H 1.09001 * 109.47059 * 299.99580 * 9 7 2 28 28 H 1.08999 * 109.47374 * 53.96286 * 11 10 9 29 29 H 1.09002 * 109.46695 * 173.95523 * 11 10 9 30 30 H 1.07996 * 120.41555 * 359.95403 * 13 12 11 31 31 H 1.07998 * 120.79102 * 180.02562 * 14 13 12 32 32 H 1.08000 * 120.41907 * 180.02562 * 15 14 13 33 33 H 1.08003 * 119.61255 * 180.02562 * 16 15 14 34 34 H 1.08998 * 109.47262 * 195.91419 * 18 10 9 35 35 H 1.08993 * 109.47235 * 315.91947 * 18 10 9 36 36 H 1.09001 * 109.47077 * 304.98041 * 19 18 10 37 37 H 1.09003 * 109.46736 * 300.00326 * 20 19 18 38 38 H 1.08997 * 109.46788 * 59.99856 * 20 19 18 39 39 H 1.09003 * 109.47652 * 299.99784 * 21 20 19 40 40 H 1.09007 * 109.47091 * 179.97438 * 21 20 19 41 41 H 1.09000 * 109.47185 * 179.97438 * 22 21 20 42 42 H 1.09004 * 109.46938 * 59.99886 * 22 21 20 43 43 H 1.09001 * 109.47088 * 300.00135 * 23 22 21 44 44 H 1.08997 * 109.46788 * 180.02562 * 23 22 21 45 45 H 1.09007 * 109.47091 * 180.02562 * 24 23 22 46 46 H 1.08993 * 109.47760 * 60.00067 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 2.7558 -3.8379 1.3444 12 6 3.5923 -2.6510 1.7474 13 6 3.0264 -1.6413 2.5030 14 6 3.8047 -0.5541 2.8690 15 6 5.1291 -0.5226 2.4589 16 6 5.6255 -1.5689 1.7050 17 7 4.8571 -2.5903 1.3799 18 6 1.5844 -4.8395 -0.5230 19 6 1.4734 -4.7437 -2.0460 20 6 0.7155 -5.9610 -2.5797 21 6 0.6039 -5.8648 -4.1025 22 6 2.0054 -5.8279 -4.7153 23 6 2.7634 -4.6106 -4.1816 24 6 2.8749 -4.7068 -2.6588 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8903 28 1 1.9390 -3.9649 2.0549 29 1 3.3757 -4.7345 1.3395 30 1 1.9908 -1.6986 2.8041 31 1 3.3895 0.2493 3.4593 32 1 5.7647 0.3086 2.7261 33 1 6.6560 -1.5521 1.3821 34 1 2.1973 -5.7007 -0.2569 35 1 0.5896 -4.9547 -0.0928 36 1 0.9357 -3.8344 -2.3146 37 1 1.2532 -6.8702 -2.3110 38 1 -0.2830 -5.9871 -2.1435 39 1 0.0659 -4.9556 -4.3709 40 1 0.0643 -6.7323 -4.4828 41 1 1.9259 -5.7598 -5.8003 42 1 2.5433 -6.7372 -4.4470 43 1 2.2254 -3.7014 -4.4498 44 1 3.7616 -4.5840 -4.6185 45 1 3.4145 -3.8393 -2.2785 46 1 3.4128 -5.6159 -2.3904 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081158733.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:11 Heat of formation + Delta-G solvation = 1.442601 kcal Electronic energy + Delta-G solvation = -23958.138838 eV Core-core repulsion = 20845.908668 eV Total energy + Delta-G solvation = -3112.230170 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.03694 -39.75341 -37.69168 -34.68836 -33.37907 -32.96302 -31.61529 -31.38904 -29.39575 -27.34767 -25.39824 -24.19857 -23.80062 -23.30692 -22.13294 -21.23159 -20.43963 -18.56043 -17.56214 -17.10832 -16.64536 -16.45817 -16.24219 -15.91752 -15.56759 -14.99285 -14.86291 -14.83502 -14.38704 -14.25080 -14.01490 -13.92874 -13.46981 -13.34839 -13.02912 -12.92393 -12.74891 -12.61462 -12.50158 -12.42180 -12.18516 -11.93055 -11.85479 -11.56552 -11.27117 -11.16604 -10.85140 -10.77158 -10.57910 -10.49893 -10.13967 -9.54953 -8.92644 -8.14129 -6.14086 0.45094 0.62983 1.31063 1.35356 1.46331 2.39646 2.95786 3.20067 3.52864 3.61287 3.84493 3.98823 4.03232 4.07945 4.15309 4.28037 4.37209 4.44784 4.49827 4.52820 4.63012 4.64297 4.68212 4.72464 4.75545 4.82108 4.91141 4.94841 4.95681 5.05061 5.13655 5.22493 5.24156 5.25240 5.34871 5.39995 5.42612 5.43817 5.51336 5.52343 5.70298 5.72403 5.77131 6.03549 6.17171 6.42808 6.68235 6.95609 7.33860 7.49127 8.96185 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.015563 B = 0.005674 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.709007 B = 4933.641648 C = 5686.618565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.014 3.986 3 Si 0.930 3.070 4 H -0.265 1.265 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.475 4.475 8 H 0.056 0.944 9 C 0.210 3.790 10 N -0.531 5.531 11 C 0.115 3.885 12 C 0.148 3.852 13 C -0.121 4.121 14 C -0.100 4.100 15 C -0.179 4.179 16 C 0.072 3.928 17 N -0.493 5.493 18 C 0.063 3.937 19 C -0.074 4.074 20 C -0.107 4.107 21 C -0.117 4.117 22 C -0.111 4.111 23 C -0.120 4.120 24 C -0.093 4.093 25 H 0.259 0.741 26 H 0.002 0.998 27 H -0.033 1.033 28 H 0.037 0.963 29 H 0.091 0.909 30 H 0.110 0.890 31 H 0.137 0.863 32 H 0.155 0.845 33 H 0.174 0.826 34 H 0.083 0.917 35 H 0.019 0.981 36 H 0.035 0.965 37 H 0.076 0.924 38 H 0.055 0.945 39 H 0.044 0.956 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.039 0.961 44 H 0.065 0.935 45 H 0.042 0.958 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.378 -9.483 -0.702 11.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.184 4.184 3 Si 0.756 3.244 4 H -0.189 1.189 5 H -0.216 1.216 6 H -0.199 1.199 7 C -0.514 4.514 8 H 0.075 0.925 9 C 0.084 3.916 10 N -0.255 5.255 11 C -0.014 4.014 12 C 0.010 3.990 13 C -0.142 4.142 14 C -0.126 4.126 15 C -0.199 4.199 16 C -0.084 4.084 17 N -0.204 5.204 18 C -0.064 4.064 19 C -0.093 4.093 20 C -0.145 4.145 21 C -0.154 4.154 22 C -0.148 4.148 23 C -0.157 4.157 24 C -0.131 4.131 25 H 0.068 0.932 26 H 0.020 0.980 27 H -0.016 1.016 28 H 0.056 0.944 29 H 0.109 0.891 30 H 0.128 0.872 31 H 0.155 0.845 32 H 0.173 0.827 33 H 0.191 0.809 34 H 0.102 0.898 35 H 0.037 0.963 36 H 0.053 0.947 37 H 0.095 0.905 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.058 0.942 44 H 0.083 0.917 45 H 0.061 0.939 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.979 -9.938 -1.495 12.235 hybrid contribution -1.264 2.083 1.020 2.641 sum 5.714 -7.855 -0.475 9.726 Atomic orbital electron populations 1.70060 1.07190 1.26994 1.53184 1.25496 0.95199 1.01613 0.96053 0.85898 0.79762 0.81083 0.77648 1.18894 1.21593 1.19905 1.21340 0.93056 0.90351 1.46619 0.92549 1.19446 0.89636 0.88986 0.93519 1.61980 1.36673 1.05440 1.21429 1.20832 0.95634 0.94904 0.89997 1.20825 0.90485 0.95714 0.92021 1.21707 0.99399 0.94916 0.98171 1.21641 0.94527 0.97436 0.99027 1.22284 0.96336 1.00829 1.00460 1.23026 1.00334 0.89748 0.95318 1.67372 1.05936 1.27209 1.19834 1.22159 0.96668 0.92169 0.95453 1.21040 0.96865 0.97767 0.93673 1.21515 0.99613 0.97392 0.95944 1.21515 0.97363 1.01611 0.94950 1.21497 0.95525 0.97940 0.99852 1.21544 1.00240 0.98263 0.95703 1.21286 0.95875 1.01251 0.94640 0.93217 0.97963 1.01557 0.94445 0.89075 0.87172 0.84514 0.82698 0.80918 0.89836 0.96273 0.94696 0.90510 0.92613 0.93676 0.90320 0.91329 0.90922 0.94227 0.91657 0.93897 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.18 13.29 21.45 0.28 -54.90 16 2 C 0.01 0.77 5.46 84.66 0.46 1.23 16 3 Si 0.93 44.41 29.54 68.60 2.03 46.44 16 4 H -0.26 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.47 -25.91 6.14 25.60 0.16 -25.75 16 8 H 0.06 3.17 6.16 -2.91 -0.02 3.15 16 9 C 0.21 10.83 4.40 85.56 0.38 11.21 16 10 N -0.53 -22.50 3.88 -905.39 -3.51 -26.01 16 11 C 0.11 4.42 5.24 85.56 0.45 4.87 16 12 C 0.15 6.02 4.11 42.55 0.18 6.19 16 13 C -0.12 -4.92 7.00 22.36 0.16 -4.76 16 14 C -0.10 -3.59 10.18 22.47 0.23 -3.36 16 15 C -0.18 -5.71 10.11 22.36 0.23 -5.48 16 16 C 0.07 2.42 11.18 84.67 0.95 3.37 16 17 N -0.49 -19.43 10.24 -183.89 -1.88 -21.32 16 18 C 0.06 2.22 4.35 86.31 0.38 2.60 16 19 C -0.07 -2.50 2.23 -10.79 -0.02 -2.52 16 20 C -0.11 -2.76 5.20 30.59 0.16 -2.60 16 21 C -0.12 -2.73 5.92 30.59 0.18 -2.55 16 22 C -0.11 -2.45 5.92 30.60 0.18 -2.27 16 23 C -0.12 -3.34 5.92 30.59 0.18 -3.16 16 24 C -0.09 -2.98 5.09 30.59 0.16 -2.83 16 25 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 26 H 0.00 0.13 6.44 -2.39 -0.02 0.12 16 27 H -0.03 -1.85 7.82 -2.39 -0.02 -1.87 16 28 H 0.04 1.41 7.84 -2.39 -0.02 1.39 16 29 H 0.09 3.11 7.83 -2.39 -0.02 3.09 16 30 H 0.11 4.70 8.06 -2.91 -0.02 4.67 16 31 H 0.14 4.30 8.06 -2.91 -0.02 4.27 16 32 H 0.16 3.75 8.06 -2.91 -0.02 3.72 16 33 H 0.17 4.52 8.06 -2.91 -0.02 4.50 16 34 H 0.08 2.51 7.73 -2.39 -0.02 2.49 16 35 H 0.02 0.69 8.00 -2.39 -0.02 0.67 16 36 H 0.03 1.45 6.69 -2.39 -0.02 1.44 16 37 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 41 H 0.07 1.33 8.14 -2.39 -0.02 1.32 16 42 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 43 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.04 1.69 7.75 -2.38 -0.02 1.67 16 46 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -64.13 356.79 2.23 -61.91 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.92 Total: 19.69 kcal Atomic # 6 Polarization: -30.20 SS G_CDS: 4.39 Total: -25.81 kcal Atomic # 7 Polarization: -97.12 SS G_CDS: -5.11 Total: -102.22 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -64.13 2.23 -61.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081158733.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.349 kcal (2) G-P(sol) polarization free energy of solvation -64.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds