Wall clock time and date at job start Fri Apr 10 2020 19:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00167 * 2 1 4 4 H 1.48502 * 109.47250 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47313 * 300.00391 * 3 2 1 6 6 H 1.48509 * 109.46732 * 60.00293 * 3 2 1 7 7 C 1.37879 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99751 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00409 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47532 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47286 * 179.97438 * 10 9 7 12 12 N 1.46904 * 109.47118 * 180.02562 * 11 10 9 13 13 C 1.46853 * 111.00067 * 189.99931 * 12 11 10 14 14 C 1.53035 * 109.52246 * 185.83994 * 13 12 11 15 15 C 1.53119 * 109.27774 * 300.81861 * 14 13 12 16 16 N 1.46498 * 109.52085 * 177.56200 * 15 14 13 17 17 C 1.39678 * 119.99677 * 155.00349 * 16 15 14 18 18 C 1.38915 * 120.06984 * 180.02562 * 17 16 15 19 19 C 1.38104 * 119.92359 * 179.97438 * 18 17 16 20 20 C 1.38288 * 120.07208 * 359.97438 * 19 18 17 21 21 C 1.38290 * 120.15288 * 0.02562 * 20 19 18 22 22 C 1.38100 * 120.07105 * 359.97438 * 21 20 19 23 23 C 1.53117 * 109.15818 * 57.65628 * 15 14 13 24 24 C 1.46847 * 111.00044 * 314.20792 * 12 11 10 25 25 H 0.96992 * 120.00004 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47297 * 59.99852 * 9 7 2 27 27 H 1.09002 * 109.47101 * 299.99720 * 9 7 2 28 28 H 1.09002 * 109.46823 * 59.99717 * 10 9 7 29 29 H 1.08995 * 109.47455 * 300.00229 * 10 9 7 30 30 H 1.09002 * 109.47297 * 60.00159 * 11 10 9 31 31 H 1.09002 * 109.47348 * 299.99877 * 11 10 9 32 32 H 1.09002 * 109.46062 * 65.82261 * 13 12 11 33 33 H 1.09004 * 109.45170 * 305.85153 * 13 12 11 34 34 H 1.09005 * 109.50070 * 180.88071 * 14 13 12 35 35 H 1.09003 * 109.50483 * 60.76223 * 14 13 12 36 36 H 1.09007 * 109.52383 * 297.68747 * 15 14 13 37 37 H 0.96998 * 120.00114 * 334.99752 * 16 15 14 38 38 H 1.07998 * 120.03739 * 359.69591 * 18 17 16 39 39 H 1.08001 * 119.96576 * 179.97438 * 19 18 17 40 40 H 1.08007 * 119.92458 * 180.02562 * 20 19 18 41 41 H 1.07997 * 119.96313 * 180.02562 * 21 20 19 42 42 H 1.08007 * 120.03349 * 179.97438 * 22 21 20 43 43 H 1.08998 * 109.50707 * 62.28904 * 23 15 14 44 44 H 1.09007 * 109.50058 * 182.40166 * 23 15 14 45 45 H 1.08996 * 109.45839 * 294.18083 * 24 12 11 46 46 H 1.08999 * 109.45712 * 54.15461 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 6 1.4803 -4.9871 -0.0033 12 7 2.4349 -6.1037 -0.0037 13 6 1.7507 -7.3810 -0.2422 14 6 2.7485 -8.5315 -0.0917 15 6 3.8888 -8.3465 -1.0967 16 7 4.8768 -9.4132 -0.9178 17 6 5.7008 -9.7875 -1.9817 18 6 6.6378 -10.7992 -1.8139 19 6 7.4506 -11.1672 -2.8681 20 6 7.3320 -10.5302 -4.0898 21 6 6.4002 -9.5226 -4.2602 22 6 5.5843 -9.1497 -3.2102 23 6 4.5535 -6.9879 -0.8579 24 6 3.5035 -5.8821 -0.9862 25 1 -0.4850 0.8400 0.0004 26 1 0.6247 -2.5563 -0.8920 27 1 0.6241 -2.5575 0.8880 28 1 2.8719 -3.6051 0.8873 29 1 2.8720 -3.6036 -0.8926 30 1 0.8533 -5.0443 -0.8931 31 1 0.8539 -5.0454 0.8869 32 1 1.3370 -7.3885 -1.2507 33 1 0.9449 -7.5019 0.4818 34 1 2.2438 -9.4783 -0.2842 35 1 3.1523 -8.5329 0.9208 36 1 3.4906 -8.3851 -2.1107 37 1 4.9589 -9.8595 -0.0605 38 1 6.7337 -11.2943 -0.8589 39 1 8.1796 -11.9534 -2.7383 40 1 7.9685 -10.8202 -4.9127 41 1 6.3099 -9.0275 -5.2157 42 1 4.8571 -8.3625 -3.3439 43 1 4.9858 -6.9650 0.1424 44 1 5.3386 -6.8319 -1.5978 45 1 3.0815 -5.8967 -1.9911 46 1 3.9708 -4.9146 -0.8025 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000102401617.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:34 Heat of formation + Delta-G solvation = 14.408582 kcal Electronic energy + Delta-G solvation = -22213.745870 eV Core-core repulsion = 19102.077948 eV Total energy + Delta-G solvation = -3111.667922 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.95464 -38.76977 -36.08760 -33.95163 -32.47044 -31.21539 -30.78191 -30.54854 -28.49854 -26.26913 -24.23831 -23.26218 -22.77841 -22.08826 -21.27644 -20.04565 -19.55083 -17.62768 -16.64422 -16.29499 -15.94294 -15.21614 -14.99036 -14.59152 -14.50042 -14.37002 -14.17115 -13.90883 -13.54149 -13.46278 -13.05064 -13.00795 -12.30632 -12.24519 -11.82715 -11.63762 -11.55673 -11.24640 -11.23106 -11.15760 -10.90836 -10.80324 -10.68313 -10.47735 -10.38863 -10.02472 -9.62017 -9.33856 -9.06471 -9.03569 -8.34696 -8.07221 -7.54803 -5.99825 -4.01856 1.29947 1.49279 3.21580 3.31169 3.38628 3.43011 3.77406 4.09358 4.46750 4.55525 4.74534 4.78774 4.84011 4.97747 5.07384 5.17983 5.27874 5.31483 5.35204 5.36180 5.48811 5.49273 5.61524 5.67405 5.69046 5.79169 5.85565 5.88125 5.97598 5.99176 6.10513 6.18723 6.26141 6.28490 6.36850 6.50729 6.68393 6.72721 6.76328 7.07792 7.20979 7.36102 7.37143 7.57003 7.67946 7.82401 8.00420 8.43586 9.05493 9.62234 11.11671 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.024950 B = 0.002605 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.969302 B =10747.886124 C =11503.278112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.112 4.112 11 C 0.056 3.944 12 N -0.539 5.539 13 C 0.058 3.942 14 C -0.120 4.120 15 C 0.151 3.849 16 N -0.742 5.742 17 C 0.221 3.779 18 C -0.201 4.201 19 C -0.074 4.074 20 C -0.186 4.186 21 C -0.072 4.072 22 C -0.199 4.199 23 C -0.129 4.129 24 C 0.050 3.950 25 H 0.259 0.741 26 H 0.013 0.987 27 H 0.016 0.984 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.029 0.971 31 H 0.072 0.928 32 H 0.032 0.968 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.398 0.602 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.030 0.970 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.383 -23.387 -4.460 25.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.150 4.150 11 C -0.071 4.071 12 N -0.264 5.264 13 C -0.071 4.071 14 C -0.159 4.159 15 C 0.045 3.955 16 N -0.369 5.369 17 C 0.117 3.883 18 C -0.224 4.224 19 C -0.093 4.093 20 C -0.206 4.206 21 C -0.091 4.091 22 C -0.222 4.222 23 C -0.168 4.168 24 C -0.078 4.078 25 H 0.069 0.931 26 H 0.032 0.968 27 H 0.035 0.965 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.090 0.910 32 H 0.050 0.950 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.232 0.768 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.049 0.951 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.303 -23.146 -4.039 25.656 hybrid contribution 0.022 0.869 -0.464 0.985 sum 10.325 -22.277 -4.503 24.963 Atomic orbital electron populations 1.69972 1.06057 1.26454 1.51085 1.25033 0.94852 0.99282 0.95396 0.86547 0.80146 0.83823 0.77562 1.19724 1.21045 1.21011 1.21280 0.93048 0.91034 1.50243 0.92666 1.19074 0.94013 0.91371 0.97141 1.21796 0.99346 0.93093 1.00749 1.22285 0.93988 0.90497 1.00300 1.62066 1.12862 1.02074 1.49409 1.21997 0.95881 0.89369 0.99834 1.21824 0.95934 0.98217 0.99894 1.21025 0.88263 0.86656 0.99527 1.44832 1.39346 1.40584 1.12177 1.17862 0.89810 0.92492 0.88086 1.20574 1.00296 1.01420 1.00094 1.20849 0.97427 0.98281 0.92695 1.20879 1.01959 0.99935 0.97836 1.20918 0.94284 0.95873 0.98008 1.20731 1.04345 1.04431 0.92676 1.22087 0.98101 0.93769 1.02874 1.22186 0.92754 0.99555 0.93329 0.93089 0.96820 0.96541 0.92547 0.93146 0.95300 0.91005 0.94994 0.90412 0.91306 0.90615 0.90707 0.76782 0.86524 0.86466 0.86716 0.86356 0.86108 0.90853 0.91473 0.95142 0.88996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 10 C -0.11 -2.30 4.40 -26.73 -0.12 -2.42 16 11 C 0.06 0.96 5.27 -3.82 -0.02 0.94 16 12 N -0.54 -7.79 4.81 -234.67 -1.13 -8.92 16 13 C 0.06 0.68 5.42 -3.83 -0.02 0.66 16 14 C -0.12 -1.16 5.57 -26.65 -0.15 -1.31 16 15 C 0.15 1.50 2.21 -67.81 -0.15 1.35 16 16 N -0.74 -6.85 5.25 -52.05 -0.27 -7.13 16 17 C 0.22 2.27 6.64 -83.78 -0.56 1.72 16 18 C -0.20 -1.89 9.90 -39.38 -0.39 -2.28 16 19 C -0.07 -0.66 10.04 -39.61 -0.40 -1.06 16 20 C -0.19 -1.70 10.04 -39.54 -0.40 -2.10 16 21 C -0.07 -0.70 10.04 -39.61 -0.40 -1.10 16 22 C -0.20 -2.10 8.90 -39.38 -0.35 -2.45 16 23 C -0.13 -1.48 5.63 -26.65 -0.15 -1.63 16 24 C 0.05 0.69 4.85 -3.84 -0.02 0.67 16 25 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.05 1.01 6.21 -51.93 -0.32 0.69 16 30 H 0.03 0.50 8.08 -51.93 -0.42 0.08 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.88 8.12 -51.93 -0.42 0.46 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.79 6.48 -51.93 -0.34 0.45 16 37 H 0.40 3.12 8.62 -40.82 -0.35 2.77 16 38 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.11 0.84 8.06 -52.48 -0.42 0.41 16 41 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.12 1.25 6.12 -52.48 -0.32 0.93 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.07 0.77 7.75 -51.93 -0.40 0.37 16 45 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.09 1.39 5.81 -51.93 -0.30 1.09 16 LS Contribution 361.41 15.07 5.45 5.45 Total: -1.00 -30.34 361.41 -11.82 -42.16 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -7.92 Total: 0.16 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: -3.66 Total: -22.13 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: -0.66 Total: -42.39 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.34 -11.82 -42.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102401617.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.564 kcal (2) G-P(sol) polarization free energy of solvation -30.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds