Wall clock time and date at job start Fri Apr 10 2020 19:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00167 * 2 1 4 4 H 1.48502 * 109.47250 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47313 * 300.00391 * 3 2 1 6 6 H 1.48509 * 109.46732 * 60.00293 * 3 2 1 7 7 C 1.37879 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99751 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00409 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47532 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47286 * 179.97438 * 10 9 7 12 12 N 1.46904 * 109.47118 * 180.02562 * 11 10 9 13 13 C 1.46853 * 111.00067 * 189.99931 * 12 11 10 14 14 C 1.53035 * 109.52246 * 185.83994 * 13 12 11 15 15 C 1.53119 * 109.27774 * 300.81861 * 14 13 12 16 16 N 1.46498 * 109.52085 * 177.56200 * 15 14 13 17 17 C 1.39678 * 119.99677 * 155.00349 * 16 15 14 18 18 C 1.38915 * 120.06984 * 180.02562 * 17 16 15 19 19 C 1.38104 * 119.92359 * 179.97438 * 18 17 16 20 20 C 1.38288 * 120.07208 * 359.97438 * 19 18 17 21 21 C 1.38290 * 120.15288 * 0.02562 * 20 19 18 22 22 C 1.38100 * 120.07105 * 359.97438 * 21 20 19 23 23 C 1.53117 * 109.15818 * 57.65628 * 15 14 13 24 24 C 1.46847 * 111.00044 * 314.20792 * 12 11 10 25 25 H 0.96992 * 120.00004 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47297 * 59.99852 * 9 7 2 27 27 H 1.09002 * 109.47101 * 299.99720 * 9 7 2 28 28 H 1.09002 * 109.46823 * 59.99717 * 10 9 7 29 29 H 1.08995 * 109.47455 * 300.00229 * 10 9 7 30 30 H 1.09002 * 109.47297 * 60.00159 * 11 10 9 31 31 H 1.09002 * 109.47348 * 299.99877 * 11 10 9 32 32 H 1.09002 * 109.46062 * 65.82261 * 13 12 11 33 33 H 1.09004 * 109.45170 * 305.85153 * 13 12 11 34 34 H 1.09005 * 109.50070 * 180.88071 * 14 13 12 35 35 H 1.09003 * 109.50483 * 60.76223 * 14 13 12 36 36 H 1.09007 * 109.52383 * 297.68747 * 15 14 13 37 37 H 0.96998 * 120.00114 * 334.99752 * 16 15 14 38 38 H 1.07998 * 120.03739 * 359.69591 * 18 17 16 39 39 H 1.08001 * 119.96576 * 179.97438 * 19 18 17 40 40 H 1.08007 * 119.92458 * 180.02562 * 20 19 18 41 41 H 1.07997 * 119.96313 * 180.02562 * 21 20 19 42 42 H 1.08007 * 120.03349 * 179.97438 * 22 21 20 43 43 H 1.08998 * 109.50707 * 62.28904 * 23 15 14 44 44 H 1.09007 * 109.50058 * 182.40166 * 23 15 14 45 45 H 1.08996 * 109.45839 * 294.18083 * 24 12 11 46 46 H 1.08999 * 109.45712 * 54.15461 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 6 1.4803 -4.9871 -0.0033 12 7 2.4349 -6.1037 -0.0037 13 6 1.7507 -7.3810 -0.2422 14 6 2.7485 -8.5315 -0.0917 15 6 3.8888 -8.3465 -1.0967 16 7 4.8768 -9.4132 -0.9178 17 6 5.7008 -9.7875 -1.9817 18 6 6.6378 -10.7992 -1.8139 19 6 7.4506 -11.1672 -2.8681 20 6 7.3320 -10.5302 -4.0898 21 6 6.4002 -9.5226 -4.2602 22 6 5.5843 -9.1497 -3.2102 23 6 4.5535 -6.9879 -0.8579 24 6 3.5035 -5.8821 -0.9862 25 1 -0.4850 0.8400 0.0004 26 1 0.6247 -2.5563 -0.8920 27 1 0.6241 -2.5575 0.8880 28 1 2.8719 -3.6051 0.8873 29 1 2.8720 -3.6036 -0.8926 30 1 0.8533 -5.0443 -0.8931 31 1 0.8539 -5.0454 0.8869 32 1 1.3370 -7.3885 -1.2507 33 1 0.9449 -7.5019 0.4818 34 1 2.2438 -9.4783 -0.2842 35 1 3.1523 -8.5329 0.9208 36 1 3.4906 -8.3851 -2.1107 37 1 4.9589 -9.8595 -0.0605 38 1 6.7337 -11.2943 -0.8589 39 1 8.1796 -11.9534 -2.7383 40 1 7.9685 -10.8202 -4.9127 41 1 6.3099 -9.0275 -5.2157 42 1 4.8571 -8.3625 -3.3439 43 1 4.9858 -6.9650 0.1424 44 1 5.3386 -6.8319 -1.5978 45 1 3.0815 -5.8967 -1.9911 46 1 3.9708 -4.9146 -0.8025 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000102401617.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:33 Heat of formation + Delta-G solvation = -2.558291 kcal Electronic energy + Delta-G solvation = -22214.481609 eV Core-core repulsion = 19102.077948 eV Total energy + Delta-G solvation = -3112.403661 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.79829 -39.69031 -37.14598 -35.64770 -34.00347 -32.27062 -31.83954 -31.57392 -29.47351 -27.90688 -25.52313 -24.37936 -23.77150 -23.27590 -22.16967 -21.37576 -20.72692 -18.52790 -18.34709 -17.40467 -16.81179 -16.52450 -16.29658 -16.08837 -15.76729 -15.22903 -15.01717 -14.99339 -14.58859 -14.44512 -14.19134 -13.88022 -13.83855 -13.63303 -13.27821 -13.07150 -12.75732 -12.52759 -12.42607 -12.37723 -12.19466 -12.08053 -11.92645 -11.65441 -11.49423 -11.47158 -11.31864 -11.07998 -10.78072 -10.55999 -9.77149 -9.26158 -8.27633 -8.21279 -6.32091 0.59267 0.77917 1.39129 1.39378 1.52905 2.39904 2.46946 2.94914 3.06126 3.11909 3.71689 3.86058 3.99721 4.12604 4.15704 4.17153 4.25769 4.32189 4.40832 4.44175 4.51465 4.55877 4.65998 4.68310 4.69381 4.77942 4.86104 4.91460 4.95161 4.99115 5.02521 5.13754 5.16277 5.21455 5.25152 5.32843 5.47001 5.50602 5.67645 5.72925 5.81012 5.84353 6.03181 6.07934 6.20149 6.27150 6.47475 6.84879 6.90703 7.37137 8.90862 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.024950 B = 0.002605 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.969302 B =10747.886124 C =11503.278112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.541 4.541 8 H 0.058 0.942 9 C 0.025 3.975 10 C -0.096 4.096 11 C 0.067 3.933 12 N -0.542 5.542 13 C 0.055 3.945 14 C -0.110 4.110 15 C 0.158 3.842 16 N -0.736 5.736 17 C 0.208 3.792 18 C -0.208 4.208 19 C -0.079 4.079 20 C -0.194 4.194 21 C -0.084 4.084 22 C -0.218 4.218 23 C -0.118 4.118 24 C 0.051 3.949 25 H 0.264 0.736 26 H -0.010 1.010 27 H -0.007 1.007 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.025 0.975 31 H 0.070 0.930 32 H 0.033 0.967 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.406 0.594 38 H 0.132 0.868 39 H 0.140 0.860 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.116 0.884 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.029 0.971 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.875 -24.618 -4.498 27.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.579 4.579 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.134 4.134 11 C -0.060 4.060 12 N -0.267 5.267 13 C -0.073 4.073 14 C -0.148 4.148 15 C 0.052 3.948 16 N -0.365 5.365 17 C 0.104 3.896 18 C -0.231 4.231 19 C -0.098 4.098 20 C -0.214 4.214 21 C -0.102 4.102 22 C -0.240 4.240 23 C -0.158 4.158 24 C -0.078 4.078 25 H 0.072 0.928 26 H 0.008 0.992 27 H 0.011 0.989 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.043 0.957 31 H 0.089 0.911 32 H 0.051 0.949 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.242 0.758 38 H 0.150 0.850 39 H 0.157 0.843 40 H 0.150 0.850 41 H 0.148 0.852 42 H 0.134 0.866 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.047 0.953 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.810 -24.406 -4.073 27.417 hybrid contribution -0.437 1.211 -0.484 1.375 sum 11.373 -23.195 -4.557 26.232 Atomic orbital electron populations 1.70097 1.07766 1.27709 1.51795 1.25990 0.95801 1.03385 0.94771 0.85402 0.79062 0.78770 0.77840 1.18650 1.20299 1.20291 1.21705 0.93465 0.92397 1.50330 0.92363 1.18975 0.94402 0.93075 0.94772 1.21540 0.98117 0.93032 1.00662 1.22021 0.93934 0.89990 1.00099 1.62052 1.12483 1.02234 1.49909 1.22114 0.96600 0.88497 1.00123 1.21744 0.95239 0.97980 0.99852 1.20860 0.88401 0.86026 0.99479 1.44700 1.39086 1.40308 1.12426 1.18026 0.90358 0.92995 0.88197 1.20833 0.99991 1.01197 1.01036 1.21189 0.97588 0.98589 0.92413 1.21177 1.01920 0.99633 0.98645 1.21161 0.94377 0.96276 0.98427 1.20844 1.04915 1.04901 0.93376 1.21973 0.97330 0.93982 1.02478 1.22159 0.92986 0.99638 0.93012 0.92758 0.99172 0.98895 0.92934 0.92809 0.95684 0.91134 0.94899 0.89717 0.89363 0.90319 0.91099 0.75848 0.84975 0.84263 0.85013 0.85215 0.86579 0.91362 0.91564 0.95316 0.90842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.36 13.29 21.45 0.28 -57.08 16 2 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 3 Si 0.96 44.76 29.54 68.60 2.03 46.79 16 4 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.54 -31.30 9.11 25.60 0.23 -31.07 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.36 4.97 29.85 0.15 1.51 16 10 C -0.10 -4.01 4.40 30.59 0.13 -3.87 16 11 C 0.07 2.32 5.27 86.30 0.46 2.77 16 12 N -0.54 -15.33 4.81 -896.35 -4.31 -19.64 16 13 C 0.05 1.21 5.42 86.32 0.47 1.68 16 14 C -0.11 -1.88 5.57 30.65 0.17 -1.71 16 15 C 0.16 2.93 2.21 45.07 0.10 3.03 16 16 N -0.74 -12.36 5.25 -318.57 -1.67 -14.03 16 17 C 0.21 3.99 6.64 38.21 0.25 4.24 16 18 C -0.21 -3.52 9.90 22.40 0.22 -3.30 16 19 C -0.08 -1.25 10.04 22.25 0.22 -1.02 16 20 C -0.19 -3.21 10.04 22.29 0.22 -2.99 16 21 C -0.08 -1.54 10.04 22.25 0.22 -1.32 16 22 C -0.22 -4.43 8.90 22.40 0.20 -4.23 16 23 C -0.12 -2.62 5.63 30.64 0.17 -2.45 16 24 C 0.05 1.37 4.85 86.32 0.42 1.79 16 25 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 26 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 27 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 28 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.05 2.20 6.21 -2.39 -0.01 2.18 16 30 H 0.02 0.88 8.08 -2.39 -0.02 0.86 16 31 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.08 1.77 8.12 -2.38 -0.02 1.75 16 34 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.07 1.41 6.48 -2.38 -0.02 1.39 16 37 H 0.41 5.49 8.62 -92.71 -0.80 4.69 16 38 H 0.13 1.74 8.06 -2.91 -0.02 1.71 16 39 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 40 H 0.13 1.65 8.06 -2.91 -0.02 1.62 16 41 H 0.13 1.95 8.06 -2.91 -0.02 1.92 16 42 H 0.12 2.37 6.12 -2.91 -0.02 2.36 16 43 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.07 1.48 7.75 -2.38 -0.02 1.47 16 45 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.07 2.25 5.81 -2.39 -0.01 2.23 16 Total: -1.00 -65.22 361.41 0.58 -64.64 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 0.14 Total: 15.91 kcal Atomic # 6 Polarization: -40.70 SS G_CDS: 4.11 Total: -36.60 kcal Atomic # 7 Polarization: -85.05 SS G_CDS: -5.70 Total: -90.75 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -65.22 0.58 -64.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102401617.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.082 kcal (2) G-P(sol) polarization free energy of solvation -65.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds