Wall clock time and date at job start Fri Apr 10 2020 19:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.50733 * 2 1 4 4 C 1.53048 * 109.49125 * 120.05806 * 2 1 3 5 5 N 1.46952 * 109.36453 * 178.36708 * 4 2 1 6 6 C 1.46908 * 110.99933 * 176.80724 * 5 4 2 7 7 C 1.50704 * 109.46587 * 64.82132 * 6 5 4 8 8 H 1.07990 * 120.00342 * 354.98818 * 7 6 5 9 9 C 1.37886 * 119.99220 * 174.98931 * 7 6 5 10 10 N 1.31505 * 120.00374 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99471 * 180.27564 * 9 7 6 12 12 H 1.48494 * 109.46934 * 269.72483 * 11 9 7 13 13 H 1.48505 * 109.47030 * 29.72529 * 11 9 7 14 14 H 1.48499 * 109.47186 * 149.72411 * 11 9 7 15 15 C 1.46952 * 110.88241 * 300.67603 * 5 4 2 16 16 C 1.53055 * 109.36530 * 59.32123 * 15 5 4 17 17 N 1.46961 * 109.36404 * 301.60078 * 16 15 5 18 18 C 1.46894 * 111.00037 * 183.18432 * 17 16 15 19 19 C 1.50697 * 109.46969 * 46.20306 * 18 17 16 20 20 C 1.38240 * 120.00106 * 269.72382 * 19 18 17 21 21 C 1.38231 * 120.00185 * 179.76948 * 20 19 18 22 22 C 1.38241 * 120.00092 * 0.50326 * 21 20 19 23 23 C 1.38232 * 119.99580 * 359.74935 * 22 21 20 24 24 C 1.38232 * 120.00246 * 89.99754 * 19 18 17 25 25 H 1.09006 * 109.47056 * 299.94379 * 1 2 3 26 26 H 1.08997 * 109.47098 * 59.94111 * 1 2 3 27 27 H 1.08994 * 109.47141 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47083 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.46728 * 300.05602 * 3 2 1 30 30 H 1.08995 * 109.47169 * 60.05389 * 3 2 1 31 31 H 1.08999 * 109.49079 * 58.39496 * 4 2 1 32 32 H 1.09002 * 109.50243 * 298.34690 * 4 2 1 33 33 H 1.08994 * 109.46771 * 304.82227 * 6 5 4 34 34 H 1.09002 * 109.46866 * 184.82190 * 6 5 4 35 35 H 0.97004 * 120.00434 * 179.97438 * 10 9 7 36 36 H 1.08999 * 109.49463 * 179.28713 * 15 5 4 37 37 H 1.08996 * 109.48815 * 299.35684 * 15 5 4 38 38 H 1.08999 * 109.49111 * 181.63122 * 16 15 5 39 39 H 1.09003 * 109.50711 * 61.57526 * 16 15 5 40 40 H 1.09003 * 109.47013 * 166.19893 * 18 17 16 41 41 H 1.08998 * 109.47204 * 286.19851 * 18 17 16 42 42 H 1.08004 * 119.99556 * 359.97438 * 20 19 18 43 43 H 1.07997 * 119.99973 * 180.23210 * 21 20 19 44 44 H 1.07994 * 120.00194 * 179.72720 * 22 21 20 45 45 H 1.08004 * 119.99746 * 179.97438 * 23 22 21 46 46 H 1.08003 * 120.00037 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 6 2.0407 -0.7227 1.2487 5 7 3.5097 -0.7553 1.2263 6 6 4.0412 -1.3752 2.4475 7 6 3.6253 -2.8228 2.4979 8 1 2.9599 -3.2200 1.7457 9 6 4.0944 -3.6402 3.5044 10 7 4.9050 -3.1567 4.4201 11 14 3.5850 -5.4365 3.5625 12 1 2.3488 -5.5744 4.3736 13 1 3.3289 -5.9232 2.1830 14 1 4.6723 -6.2398 4.1769 15 6 3.9999 -1.4491 0.0272 16 6 3.4893 -0.7265 -1.2216 17 7 2.0202 -0.6938 -1.1992 18 6 1.4888 -0.0739 -2.4203 19 6 2.1960 -0.6449 -3.6223 20 6 3.3446 -0.0417 -4.0996 21 6 3.9960 -0.5682 -5.1992 22 6 3.4931 -1.6919 -5.8280 23 6 2.3417 -2.2921 -5.3538 24 6 1.6931 -1.7686 -4.2510 25 1 -0.3633 0.5130 0.8905 26 1 -0.3633 0.5147 -0.8894 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1309 1.4415 -0.0005 29 1 1.6771 1.9565 -0.8895 30 1 1.6787 1.9560 0.8904 31 1 1.6544 -1.7418 1.2627 32 1 1.7022 -0.1933 2.1395 33 1 3.6483 -0.8537 3.3202 34 1 5.1292 -1.3096 2.4443 35 1 5.2348 -3.7316 5.1284 36 1 5.0899 -1.4491 0.0271 37 1 3.6359 -2.4765 0.0272 38 1 3.8277 -1.2561 -2.1122 39 1 3.8755 0.2927 -1.2359 40 1 0.4207 -0.2781 -2.4962 41 1 1.6508 1.0033 -2.3811 42 1 3.7348 0.8391 -3.6113 43 1 4.8954 -0.0991 -5.5699 44 1 3.9996 -2.1007 -6.6898 45 1 1.9485 -3.1698 -5.8453 46 1 0.7935 -2.2376 -3.8805 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104731610.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:39 Heat of formation + Delta-G solvation = 39.042525 kcal Electronic energy + Delta-G solvation = -23923.810254 eV Core-core repulsion = 20813.210539 eV Total energy + Delta-G solvation = -3110.599715 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.11136 -38.69956 -35.46211 -33.20054 -32.39991 -31.05152 -30.77902 -28.31773 -26.96151 -26.60340 -25.56856 -23.78108 -22.76205 -22.13157 -20.97876 -20.23072 -17.97235 -16.77005 -16.41600 -15.61845 -15.53243 -15.23806 -14.72024 -14.41259 -14.35658 -13.84536 -13.75344 -13.37681 -13.12920 -12.92471 -12.57595 -12.45839 -12.36204 -11.86455 -11.79678 -11.58295 -11.42682 -11.12452 -11.01675 -10.99377 -10.85351 -10.72748 -10.49844 -10.41972 -10.12854 -9.95584 -9.74391 -9.42975 -8.90038 -8.75631 -8.39659 -7.87896 -7.09724 -5.98892 -4.07535 1.32292 1.40267 3.29983 3.36757 3.40896 3.71249 4.32586 4.44251 4.77016 4.84000 4.97928 5.04630 5.09482 5.19094 5.31024 5.33511 5.46081 5.47419 5.49649 5.58065 5.68533 5.84159 5.85348 5.93729 5.99625 6.01189 6.05819 6.11202 6.15205 6.23074 6.35588 6.40154 6.45033 6.49177 6.64266 6.65656 6.74196 6.83398 6.95550 6.98612 7.27869 7.41828 7.52045 7.56601 7.94113 8.10932 8.33940 8.34599 9.03433 9.59190 11.05974 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.016597 B = 0.004696 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.646955 B = 5960.674846 C = 6692.801544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.107 3.893 3 C -0.169 4.169 4 C 0.078 3.922 5 N -0.540 5.540 6 C 0.187 3.813 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.065 3.935 10 N -0.893 5.893 11 Si 0.887 3.113 12 H -0.281 1.281 13 H -0.274 1.274 14 H -0.286 1.286 15 C 0.066 3.934 16 C 0.054 3.946 17 N -0.517 5.517 18 C 0.086 3.914 19 C -0.074 4.074 20 C -0.113 4.113 21 C -0.122 4.122 22 C -0.125 4.125 23 C -0.122 4.122 24 C -0.101 4.101 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.042 0.958 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.065 0.935 33 H 0.026 0.974 34 H 0.033 0.967 35 H 0.261 0.739 36 H 0.065 0.935 37 H 0.048 0.952 38 H 0.072 0.928 39 H 0.036 0.964 40 H 0.080 0.920 41 H 0.045 0.955 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.198 7.045 -17.423 19.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.017 3.983 3 C -0.227 4.227 4 C -0.051 4.051 5 N -0.264 5.264 6 C 0.062 3.938 7 C -0.585 4.585 8 H 0.077 0.923 9 C -0.138 4.138 10 N -0.531 5.531 11 Si 0.715 3.285 12 H -0.207 1.207 13 H -0.199 1.199 14 H -0.212 1.212 15 C -0.063 4.063 16 C -0.074 4.074 17 N -0.242 5.242 18 C -0.041 4.041 19 C -0.075 4.075 20 C -0.131 4.131 21 C -0.140 4.140 22 C -0.143 4.143 23 C -0.140 4.140 24 C -0.119 4.119 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.044 0.956 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.091 0.909 39 H 0.054 0.946 40 H 0.098 0.902 41 H 0.063 0.937 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.082 6.999 -17.234 19.570 hybrid contribution -0.144 -1.163 0.194 1.188 sum -6.226 5.836 -17.040 19.057 Atomic orbital electron populations 1.21861 0.94383 1.02237 1.01165 1.21200 0.94159 0.92138 0.90800 1.22319 1.03056 0.96752 1.00597 1.21909 0.89879 0.99014 0.94293 1.62669 1.06726 1.53049 1.03972 1.19724 0.95872 0.92059 0.86186 1.21771 1.29170 0.96289 1.11247 0.92335 1.24952 0.94843 0.98404 0.95557 1.69942 1.32742 1.36030 1.14430 0.86665 0.78202 0.85377 0.78221 1.20685 1.19926 1.21216 1.21910 0.98819 0.96796 0.88789 1.22365 0.86812 0.99267 0.98925 1.62516 1.09163 1.52170 1.00343 1.21179 0.98864 0.96447 0.87592 1.19842 0.95596 0.95856 0.96160 1.21094 0.95280 1.00196 0.96575 1.21090 0.99858 0.96774 0.96302 1.21109 0.96639 0.96426 1.00173 1.21137 0.96020 0.99878 0.97004 1.21042 1.00216 0.95414 0.95251 0.92272 0.93047 0.91946 0.90937 0.93931 0.92478 0.93588 0.91611 0.95601 0.94849 0.92897 0.91618 0.93385 0.90945 0.94623 0.90158 0.93745 0.86395 0.86307 0.86443 0.86309 0.86003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.15 37.16 0.30 -1.52 16 2 C 0.11 1.65 0.68 -131.54 -0.09 1.56 16 3 C -0.17 -2.43 7.68 37.16 0.29 -2.14 16 4 C 0.08 1.53 4.03 -3.77 -0.02 1.51 16 5 N -0.54 -11.59 4.23 -235.91 -1.00 -12.58 16 6 C 0.19 4.84 5.14 -4.97 -0.03 4.82 16 7 C -0.55 -15.10 7.66 -34.44 -0.26 -15.36 16 8 H 0.06 1.64 5.82 -52.49 -0.31 1.33 16 9 C 0.06 1.83 5.46 -17.82 -0.10 1.74 16 10 N -0.89 -26.44 13.28 55.43 0.74 -25.70 16 11 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 C 0.07 1.33 5.24 -3.77 -0.02 1.31 16 16 C 0.05 0.89 4.27 -3.76 -0.02 0.87 16 17 N -0.52 -7.96 4.62 -220.24 -1.02 -8.98 16 18 C 0.09 1.09 4.47 -4.98 -0.02 1.07 16 19 C -0.07 -0.92 4.13 -104.63 -0.43 -1.35 16 20 C -0.11 -1.32 7.87 -39.58 -0.31 -1.63 16 21 C -0.12 -1.31 10.05 -39.58 -0.40 -1.70 16 22 C -0.13 -1.30 10.05 -39.58 -0.40 -1.70 16 23 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 24 C -0.10 -1.20 9.70 -39.58 -0.38 -1.58 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.59 6.59 -51.93 -0.34 0.25 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 1.17 5.94 -51.93 -0.31 0.86 16 29 H 0.04 0.54 6.29 -51.93 -0.33 0.21 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 1.01 6.78 -51.93 -0.35 0.66 16 32 H 0.07 1.29 8.12 -51.93 -0.42 0.87 16 33 H 0.03 0.71 8.12 -51.93 -0.42 0.29 16 34 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.05 1.10 6.62 -51.93 -0.34 0.75 16 38 H 0.07 1.17 5.86 -51.93 -0.30 0.86 16 39 H 0.04 0.57 6.35 -51.93 -0.33 0.24 16 40 H 0.08 0.95 6.80 -51.93 -0.35 0.60 16 41 H 0.04 0.55 5.90 -51.93 -0.31 0.24 16 42 H 0.12 1.30 8.06 -52.48 -0.42 0.87 16 43 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 44 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 45 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 46 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 LS Contribution 346.10 15.07 5.22 5.22 Total: -1.00 -29.26 346.10 -10.85 -40.11 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -7.48 Total: 1.06 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -2.28 Total: -15.83 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: -1.28 Total: -47.27 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.26 -10.85 -40.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104731610.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.148 kcal (2) G-P(sol) polarization free energy of solvation -29.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds