Wall clock time and date at job start Fri Apr 10 2020 19:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.50733 * 2 1 4 4 C 1.53048 * 109.49125 * 120.05806 * 2 1 3 5 5 N 1.46952 * 109.36453 * 178.36708 * 4 2 1 6 6 C 1.46908 * 110.99933 * 176.80724 * 5 4 2 7 7 C 1.50704 * 109.46587 * 64.82132 * 6 5 4 8 8 H 1.07990 * 120.00342 * 354.98818 * 7 6 5 9 9 C 1.37886 * 119.99220 * 174.98931 * 7 6 5 10 10 N 1.31505 * 120.00374 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99471 * 180.27564 * 9 7 6 12 12 H 1.48494 * 109.46934 * 269.72483 * 11 9 7 13 13 H 1.48505 * 109.47030 * 29.72529 * 11 9 7 14 14 H 1.48499 * 109.47186 * 149.72411 * 11 9 7 15 15 C 1.46952 * 110.88241 * 300.67603 * 5 4 2 16 16 C 1.53055 * 109.36530 * 59.32123 * 15 5 4 17 17 N 1.46961 * 109.36404 * 301.60078 * 16 15 5 18 18 C 1.46894 * 111.00037 * 183.18432 * 17 16 15 19 19 C 1.50697 * 109.46969 * 46.20306 * 18 17 16 20 20 C 1.38240 * 120.00106 * 269.72382 * 19 18 17 21 21 C 1.38231 * 120.00185 * 179.76948 * 20 19 18 22 22 C 1.38241 * 120.00092 * 0.50326 * 21 20 19 23 23 C 1.38232 * 119.99580 * 359.74935 * 22 21 20 24 24 C 1.38232 * 120.00246 * 89.99754 * 19 18 17 25 25 H 1.09006 * 109.47056 * 299.94379 * 1 2 3 26 26 H 1.08997 * 109.47098 * 59.94111 * 1 2 3 27 27 H 1.08994 * 109.47141 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47083 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.46728 * 300.05602 * 3 2 1 30 30 H 1.08995 * 109.47169 * 60.05389 * 3 2 1 31 31 H 1.08999 * 109.49079 * 58.39496 * 4 2 1 32 32 H 1.09002 * 109.50243 * 298.34690 * 4 2 1 33 33 H 1.08994 * 109.46771 * 304.82227 * 6 5 4 34 34 H 1.09002 * 109.46866 * 184.82190 * 6 5 4 35 35 H 0.97004 * 120.00434 * 179.97438 * 10 9 7 36 36 H 1.08999 * 109.49463 * 179.28713 * 15 5 4 37 37 H 1.08996 * 109.48815 * 299.35684 * 15 5 4 38 38 H 1.08999 * 109.49111 * 181.63122 * 16 15 5 39 39 H 1.09003 * 109.50711 * 61.57526 * 16 15 5 40 40 H 1.09003 * 109.47013 * 166.19893 * 18 17 16 41 41 H 1.08998 * 109.47204 * 286.19851 * 18 17 16 42 42 H 1.08004 * 119.99556 * 359.97438 * 20 19 18 43 43 H 1.07997 * 119.99973 * 180.23210 * 21 20 19 44 44 H 1.07994 * 120.00194 * 179.72720 * 22 21 20 45 45 H 1.08004 * 119.99746 * 179.97438 * 23 22 21 46 46 H 1.08003 * 120.00037 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 6 2.0407 -0.7227 1.2487 5 7 3.5097 -0.7553 1.2263 6 6 4.0412 -1.3752 2.4475 7 6 3.6253 -2.8228 2.4979 8 1 2.9599 -3.2200 1.7457 9 6 4.0944 -3.6402 3.5044 10 7 4.9050 -3.1567 4.4201 11 14 3.5850 -5.4365 3.5625 12 1 2.3488 -5.5744 4.3736 13 1 3.3289 -5.9232 2.1830 14 1 4.6723 -6.2398 4.1769 15 6 3.9999 -1.4491 0.0272 16 6 3.4893 -0.7265 -1.2216 17 7 2.0202 -0.6938 -1.1992 18 6 1.4888 -0.0739 -2.4203 19 6 2.1960 -0.6449 -3.6223 20 6 3.3446 -0.0417 -4.0996 21 6 3.9960 -0.5682 -5.1992 22 6 3.4931 -1.6919 -5.8280 23 6 2.3417 -2.2921 -5.3538 24 6 1.6931 -1.7686 -4.2510 25 1 -0.3633 0.5130 0.8905 26 1 -0.3633 0.5147 -0.8894 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1309 1.4415 -0.0005 29 1 1.6771 1.9565 -0.8895 30 1 1.6787 1.9560 0.8904 31 1 1.6544 -1.7418 1.2627 32 1 1.7022 -0.1933 2.1395 33 1 3.6483 -0.8537 3.3202 34 1 5.1292 -1.3096 2.4443 35 1 5.2348 -3.7316 5.1284 36 1 5.0899 -1.4491 0.0271 37 1 3.6359 -2.4765 0.0272 38 1 3.8277 -1.2561 -2.1122 39 1 3.8755 0.2927 -1.2359 40 1 0.4207 -0.2781 -2.4962 41 1 1.6508 1.0033 -2.3811 42 1 3.7348 0.8391 -3.6113 43 1 4.8954 -0.0991 -5.5699 44 1 3.9996 -2.1007 -6.6898 45 1 1.9485 -3.1698 -5.8453 46 1 0.7935 -2.2376 -3.8805 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104731610.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:38 Heat of formation + Delta-G solvation = 21.558815 kcal Electronic energy + Delta-G solvation = -23924.568404 eV Core-core repulsion = 20813.210539 eV Total energy + Delta-G solvation = -3111.357865 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.31237 -39.74578 -37.10065 -34.59293 -34.25351 -32.19576 -31.68443 -29.79768 -28.30375 -28.08315 -27.06657 -25.31358 -24.04749 -23.28058 -22.10379 -21.75040 -19.46849 -18.38328 -17.63014 -17.07483 -16.73503 -16.41402 -16.20170 -15.94948 -15.52946 -15.36168 -14.93285 -14.82720 -14.22353 -14.17562 -13.94288 -13.73301 -13.53157 -13.43844 -13.18092 -12.92413 -12.75082 -12.69372 -12.60207 -12.35322 -12.14999 -12.11472 -11.93549 -11.89922 -11.79518 -11.69563 -11.41321 -11.08010 -10.61557 -9.73876 -9.64542 -9.13207 -8.93184 -8.15766 -6.35237 0.47450 0.57068 1.34733 1.35271 1.46285 2.36276 2.78617 3.08314 3.21073 3.37719 3.82653 3.91307 4.00853 4.15266 4.21449 4.22491 4.29018 4.34352 4.43649 4.52629 4.60214 4.67341 4.72012 4.77313 4.79418 4.86029 4.90582 4.96956 5.02150 5.12425 5.15935 5.18162 5.22386 5.23724 5.26196 5.30924 5.32469 5.55859 5.62386 5.68138 5.72860 5.77731 6.03699 6.15019 6.17168 6.22878 6.35900 6.53528 6.85630 7.35907 8.86229 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.016597 B = 0.004696 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.646955 B = 5960.674846 C = 6692.801544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.111 3.889 3 C -0.161 4.161 4 C 0.080 3.920 5 N -0.534 5.534 6 C 0.200 3.800 7 C -0.552 4.552 8 H 0.052 0.948 9 C 0.014 3.986 10 N -0.926 5.926 11 Si 0.955 3.045 12 H -0.272 1.272 13 H -0.272 1.272 14 H -0.279 1.279 15 C 0.069 3.931 16 C 0.073 3.927 17 N -0.530 5.530 18 C 0.092 3.908 19 C -0.090 4.090 20 C -0.123 4.123 21 C -0.129 4.129 22 C -0.129 4.129 23 C -0.130 4.130 24 C -0.115 4.115 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.016 0.984 32 H 0.060 0.940 33 H 0.003 0.997 34 H 0.006 0.994 35 H 0.265 0.735 36 H 0.056 0.944 37 H 0.018 0.982 38 H 0.079 0.921 39 H 0.044 0.956 40 H 0.092 0.908 41 H 0.054 0.946 42 H 0.123 0.877 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.137 0.863 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.294 7.181 -19.525 22.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.021 3.979 3 C -0.220 4.220 4 C -0.049 4.049 5 N -0.257 5.257 6 C 0.074 3.926 7 C -0.591 4.591 8 H 0.070 0.930 9 C -0.186 4.186 10 N -0.566 5.566 11 Si 0.780 3.220 12 H -0.198 1.198 13 H -0.197 1.197 14 H -0.204 1.204 15 C -0.060 4.060 16 C -0.055 4.055 17 N -0.255 5.255 18 C -0.034 4.034 19 C -0.090 4.090 20 C -0.142 4.142 21 C -0.146 4.146 22 C -0.147 4.147 23 C -0.148 4.148 24 C -0.133 4.133 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.035 0.965 32 H 0.078 0.922 33 H 0.021 0.979 34 H 0.024 0.976 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.036 0.964 38 H 0.097 0.903 39 H 0.062 0.938 40 H 0.110 0.890 41 H 0.072 0.928 42 H 0.141 0.859 43 H 0.156 0.844 44 H 0.158 0.842 45 H 0.154 0.846 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.193 7.147 -19.354 21.849 hybrid contribution 0.220 -1.195 0.804 1.457 sum -6.973 5.952 -18.550 20.692 Atomic orbital electron populations 1.21821 0.92132 1.02230 1.02870 1.21129 0.95744 0.92137 0.88843 1.22232 1.01752 0.95967 1.02039 1.21944 0.88200 0.97931 0.96796 1.62608 1.08180 1.52165 1.02763 1.19387 0.94122 0.91601 0.87532 1.21931 1.28946 0.97175 1.11084 0.92985 1.25775 0.94793 1.02886 0.95130 1.70055 1.33727 1.37726 1.15069 0.85602 0.78152 0.79934 0.78294 1.19766 1.19650 1.20438 1.21897 0.98376 0.95674 0.90082 1.22104 0.87859 0.99022 0.96555 1.62451 1.08227 1.53245 1.01540 1.21192 0.99335 0.96729 0.86157 1.19880 0.96240 0.96495 0.96410 1.21243 0.95282 1.00535 0.97118 1.21389 1.00406 0.96892 0.95952 1.21449 0.96437 0.96138 1.00646 1.21421 0.96160 1.00443 0.96752 1.21212 1.00676 0.95586 0.95869 0.91410 0.90500 0.92847 0.92842 0.91371 0.92143 0.96529 0.92186 0.97883 0.97621 0.92596 0.92545 0.96402 0.90283 0.93818 0.89017 0.92771 0.85937 0.84435 0.84226 0.84561 0.85758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 8.15 71.98 0.59 -2.62 16 2 C 0.11 3.32 0.68 3.53 0.00 3.32 16 3 C -0.16 -4.33 7.68 71.98 0.55 -3.78 16 4 C 0.08 3.20 4.03 86.31 0.35 3.54 16 5 N -0.53 -23.72 4.23 -900.29 -3.81 -27.53 16 6 C 0.20 10.89 5.14 85.56 0.44 11.33 16 7 C -0.55 -31.63 7.66 25.60 0.20 -31.44 16 8 H 0.05 3.01 5.82 -2.92 -0.02 2.99 16 9 C 0.01 0.78 5.46 84.66 0.46 1.24 16 10 N -0.93 -56.10 13.28 21.45 0.28 -55.81 16 11 Si 0.96 45.17 29.54 68.60 2.03 47.20 16 12 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 13 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 14 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 15 C 0.07 2.86 5.24 86.31 0.45 3.31 16 16 C 0.07 2.34 4.27 86.31 0.37 2.71 16 17 N -0.53 -15.65 4.62 -850.71 -3.93 -19.58 16 18 C 0.09 2.11 4.47 85.56 0.38 2.50 16 19 C -0.09 -2.05 4.13 -19.87 -0.08 -2.13 16 20 C -0.12 -2.63 7.87 22.27 0.18 -2.45 16 21 C -0.13 -2.44 10.05 22.27 0.22 -2.22 16 22 C -0.13 -2.34 10.05 22.27 0.22 -2.12 16 23 C -0.13 -2.53 10.05 22.27 0.22 -2.31 16 24 C -0.11 -2.54 9.70 22.27 0.22 -2.32 16 25 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 26 H 0.08 1.49 6.59 -2.39 -0.02 1.47 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.05 1.65 5.94 -2.39 -0.01 1.63 16 29 H 0.07 1.49 6.29 -2.39 -0.02 1.48 16 30 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.02 0.75 6.78 -2.39 -0.02 0.73 16 32 H 0.06 2.41 8.12 -2.39 -0.02 2.40 16 33 H 0.00 0.18 8.12 -2.39 -0.02 0.16 16 34 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 36 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.02 0.84 6.62 -2.39 -0.02 0.83 16 38 H 0.08 2.47 5.86 -2.39 -0.01 2.46 16 39 H 0.04 1.35 6.35 -2.39 -0.02 1.34 16 40 H 0.09 1.90 6.80 -2.39 -0.02 1.89 16 41 H 0.05 1.15 5.90 -2.39 -0.01 1.13 16 42 H 0.12 2.43 8.06 -2.91 -0.02 2.41 16 43 H 0.14 2.02 8.06 -2.91 -0.02 1.99 16 44 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 45 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 46 H 0.12 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -64.43 346.10 0.28 -64.14 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.94 Total: 15.02 kcal Atomic # 6 Polarization: -28.22 SS G_CDS: 4.77 Total: -23.45 kcal Atomic # 7 Polarization: -95.46 SS G_CDS: -7.46 Total: -102.92 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -64.43 0.28 -64.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104731610.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.703 kcal (2) G-P(sol) polarization free energy of solvation -64.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds