Wall clock time and date at job start Fri Apr 10 2020 19:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47005 * 2 1 4 4 H 1.08999 * 109.46965 * 179.82697 * 3 2 1 5 5 C 1.50694 * 109.47081 * 299.82867 * 3 2 1 6 6 H 1.08003 * 119.99975 * 120.00332 * 5 3 2 7 7 C 1.37881 * 119.99870 * 300.00023 * 5 3 2 8 8 N 1.31511 * 120.00009 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99819 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47321 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47377 * 120.00091 * 9 7 5 12 12 H 1.48501 * 109.46673 * 239.99724 * 9 7 5 13 13 N 1.46900 * 109.46772 * 59.82770 * 3 2 1 14 14 C 1.46901 * 111.00104 * 85.92987 * 13 3 2 15 15 C 1.50696 * 109.47137 * 175.56517 * 14 13 3 16 16 C 1.38803 * 120.18121 * 89.99700 * 15 14 13 17 17 N 1.31505 * 121.59296 * 180.25484 * 16 15 14 18 18 C 1.32767 * 121.46826 * 359.43245 * 17 16 15 19 19 C 1.40912 * 119.85554 * 0.55637 * 18 17 16 20 20 C 1.37022 * 120.17603 * 269.97177 * 15 14 13 21 21 C 1.45853 * 106.45731 * 179.70711 * 19 18 17 22 22 C 1.50701 * 126.17455 * 179.97438 * 21 19 18 23 23 N 1.30243 * 107.66012 * 0.02562 * 21 19 18 24 24 N 1.36822 * 133.57355 * 180.17116 * 18 17 16 25 25 C 1.46498 * 125.39136 * 0.34800 * 24 18 17 26 26 H 1.08996 * 109.47514 * 55.59173 * 1 2 3 27 27 H 1.09008 * 109.47416 * 175.59078 * 1 2 3 28 28 H 1.09005 * 109.47285 * 295.58941 * 1 2 3 29 29 H 1.08998 * 109.47344 * 239.99741 * 2 1 3 30 30 H 1.09002 * 109.46822 * 119.99581 * 2 1 3 31 31 H 0.97000 * 119.99936 * 180.02562 * 8 7 5 32 32 H 1.00904 * 110.99679 * 209.87647 * 13 3 2 33 33 H 1.08999 * 109.47548 * 55.55785 * 14 13 3 34 34 H 1.09006 * 109.46809 * 295.55881 * 14 13 3 35 35 H 1.08002 * 119.20475 * 359.97438 * 16 15 14 36 36 H 1.07998 * 120.92176 * 0.02562 * 20 15 14 37 37 H 1.09000 * 109.46913 * 89.99512 * 22 21 19 38 38 H 1.08995 * 109.47843 * 210.00477 * 22 21 19 39 39 H 1.09000 * 109.46569 * 330.00591 * 22 21 19 40 40 H 1.09000 * 109.46996 * 89.99856 * 25 24 18 41 41 H 1.08996 * 109.47603 * 209.99756 * 25 24 18 42 42 H 1.08998 * 109.47165 * 329.99921 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1299 1.4425 0.0031 5 6 1.5411 2.1517 -1.2325 6 1 0.9199 3.0299 -1.1361 7 6 1.8777 1.6793 -2.4834 8 7 2.6346 0.6103 -2.6008 9 14 1.2599 2.5588 -4.0112 10 1 0.4336 3.7258 -3.6106 11 1 2.4174 3.0243 -4.8166 12 1 0.4370 1.6249 -4.8211 13 7 1.5468 2.1361 1.1974 14 6 2.4391 1.9094 2.3421 15 6 1.9627 2.7213 3.5189 16 6 1.0544 2.1801 4.4181 17 7 0.6164 2.8653 5.4516 18 6 1.0321 4.1038 5.6885 19 6 1.9541 4.7135 4.8145 20 6 2.4243 3.9976 3.7072 21 6 2.1986 6.0519 5.3400 22 6 3.1179 7.0871 4.7447 23 7 1.4800 6.1908 6.4174 24 7 0.7526 5.0221 6.6634 25 6 -0.1635 4.8140 7.7876 26 1 -0.3634 0.5807 -0.8478 27 1 -0.3634 -1.0247 -0.0790 28 1 -0.3634 0.4439 0.9269 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 2.8717 0.2782 -3.4808 32 1 1.4287 3.1226 1.0209 33 1 3.4526 2.2119 2.0784 34 1 2.4323 0.8514 2.6041 35 1 0.6952 1.1734 4.2629 36 1 3.1312 4.4391 3.0204 37 1 2.5629 7.7007 4.0350 38 1 3.5159 7.7193 5.5384 39 1 3.9399 6.5898 4.2297 40 1 0.3863 4.3982 8.6320 41 1 -0.6068 5.7669 8.0764 42 1 -0.9514 4.1218 7.4908 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107912645.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:40 Heat of formation + Delta-G solvation = 75.204832 kcal Electronic energy + Delta-G solvation = -22367.683719 eV Core-core repulsion = 19155.111776 eV Total energy + Delta-G solvation = -3212.571943 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.165 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.59085 -39.55814 -37.89922 -35.53769 -34.70754 -33.21910 -32.06504 -31.07873 -30.40447 -28.43766 -26.82669 -25.35550 -24.91341 -24.77358 -22.55830 -20.91310 -20.77037 -18.58826 -18.39601 -17.80503 -16.99156 -16.92387 -16.77956 -15.82878 -15.38137 -15.17016 -14.81573 -14.51180 -14.45786 -14.21948 -14.15795 -13.99879 -13.76723 -13.64319 -13.40447 -13.14920 -12.91779 -12.79804 -12.64403 -12.52278 -12.36440 -12.00856 -11.78434 -11.57402 -11.34331 -11.20716 -10.72722 -10.52679 -10.43990 -9.97024 -9.18918 -8.88105 -8.05499 -6.16597 -0.23667 0.25186 1.17505 1.36186 1.42691 1.46615 1.56028 2.45669 2.71010 3.12929 3.23844 3.26032 3.50858 3.73954 3.97879 4.00243 4.17764 4.25769 4.33078 4.37172 4.60163 4.64111 4.70348 4.76165 4.78614 4.86286 4.88042 4.91404 4.99766 5.03532 5.30937 5.34729 5.38360 5.47422 5.59159 5.63345 5.77019 5.84151 5.89416 5.96486 6.35728 6.42365 6.54904 6.85368 6.88144 7.08420 7.52104 8.99288 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.022252 B = 0.003584 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.995844 B = 7810.272072 C = 8499.554237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.100 4.100 3 C 0.222 3.778 4 H -0.028 1.028 5 C -0.520 4.520 6 H 0.055 0.945 7 C 0.019 3.981 8 N -0.915 5.915 9 Si 0.949 3.051 10 H -0.268 1.268 11 H -0.283 1.283 12 H -0.285 1.285 13 N -0.676 5.676 14 C 0.115 3.885 15 C -0.166 4.166 16 C 0.189 3.811 17 N -0.521 5.521 18 C 0.287 3.713 19 C -0.240 4.240 20 C 0.013 3.987 21 C 0.110 3.890 22 C -0.074 4.074 23 N -0.267 5.267 24 N -0.408 5.408 25 C 0.109 3.891 26 H 0.032 0.968 27 H 0.030 0.970 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.026 0.974 31 H 0.260 0.740 32 H 0.331 0.669 33 H 0.031 0.969 34 H 0.078 0.922 35 H 0.181 0.819 36 H 0.156 0.844 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.079 0.921 41 H 0.101 0.899 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.410 8.617 16.574 18.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.139 4.139 3 C 0.114 3.886 4 H -0.011 1.011 5 C -0.558 4.558 6 H 0.074 0.926 7 C -0.181 4.181 8 N -0.555 5.555 9 Si 0.776 3.224 10 H -0.193 1.193 11 H -0.209 1.209 12 H -0.211 1.211 13 N -0.306 5.306 14 C -0.015 4.015 15 C -0.170 4.170 16 C 0.020 3.980 17 N -0.236 5.236 18 C 0.049 3.951 19 C -0.250 4.250 20 C -0.015 4.015 21 C -0.068 4.068 22 C -0.133 4.133 23 N -0.081 5.081 24 N -0.200 5.200 25 C -0.031 4.031 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.045 0.955 31 H 0.069 0.931 32 H 0.148 0.852 33 H 0.050 0.950 34 H 0.097 0.903 35 H 0.198 0.802 36 H 0.173 0.827 37 H 0.115 0.885 38 H 0.111 0.889 39 H 0.116 0.884 40 H 0.097 0.903 41 H 0.119 0.881 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.837 8.448 18.374 20.306 hybrid contribution 1.159 0.378 -2.311 2.613 sum -0.678 8.826 16.063 18.340 Atomic orbital electron populations 1.21315 0.96227 0.98182 1.00824 1.21324 0.96052 0.97751 0.98734 1.18946 0.91104 0.92057 0.86516 1.01066 1.21484 1.31105 1.11843 0.91403 0.92648 1.25555 0.95337 0.95641 1.01519 1.70012 1.37725 1.23906 1.23839 0.85642 0.78028 0.78754 0.80007 1.19255 1.20899 1.21089 1.60715 1.49057 1.15663 1.05182 1.20682 0.93688 0.98939 0.88172 1.20342 1.01546 0.95998 0.99143 1.22932 0.89706 0.99124 0.86199 1.66848 1.28497 1.05330 1.22905 1.19356 0.94593 0.90365 0.90823 1.20610 1.06138 0.97156 1.01062 1.20888 0.95398 0.92036 0.93206 1.24100 0.96878 0.93908 0.91907 1.20460 0.96584 0.94844 1.01365 1.76588 1.08986 1.04447 1.18117 1.48283 1.40149 1.08123 1.23404 1.21977 0.91363 1.04249 0.85501 0.94876 0.95098 0.92774 0.92565 0.95540 0.93113 0.85234 0.95039 0.90331 0.80211 0.82689 0.88485 0.88927 0.88369 0.90250 0.88063 0.89111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.59 9.52 71.98 0.69 -3.91 16 2 C -0.10 -4.61 5.59 30.59 0.17 -4.44 16 3 C 0.22 10.46 2.30 44.17 0.10 10.57 16 4 H -0.03 -1.48 7.71 -2.39 -0.02 -1.50 16 5 C -0.52 -26.89 7.26 25.60 0.19 -26.71 16 6 H 0.06 2.85 7.60 -2.91 -0.02 2.83 16 7 C 0.02 0.99 5.30 84.66 0.45 1.44 16 8 N -0.92 -50.95 11.32 21.45 0.24 -50.70 16 9 Si 0.95 42.42 29.54 68.60 2.03 44.44 16 10 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 N -0.68 -25.92 5.64 -499.47 -2.81 -28.73 16 14 C 0.11 3.62 5.67 85.56 0.48 4.10 16 15 C -0.17 -4.66 5.33 -20.02 -0.11 -4.77 16 16 C 0.19 5.29 10.82 84.88 0.92 6.21 16 17 N -0.52 -15.68 10.40 -192.96 -2.01 -17.69 16 18 C 0.29 8.62 7.97 134.12 1.07 9.69 16 19 C -0.24 -6.64 6.35 -20.23 -0.13 -6.77 16 20 C 0.01 0.35 9.83 22.41 0.22 0.57 16 21 C 0.11 2.65 7.44 44.77 0.33 2.98 16 22 C -0.07 -1.09 10.48 71.24 0.75 -0.35 16 23 N -0.27 -7.09 12.40 -43.75 -0.54 -7.63 16 24 N -0.41 -11.00 4.04 -366.56 -1.48 -12.48 16 25 C 0.11 2.00 11.44 127.77 1.46 3.46 16 26 H 0.03 1.53 7.07 -2.39 -0.02 1.51 16 27 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 28 H 0.05 2.14 7.74 -2.38 -0.02 2.12 16 29 H 0.06 2.96 6.07 -2.39 -0.01 2.95 16 30 H 0.03 1.10 7.60 -2.39 -0.02 1.09 16 31 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 32 H 0.33 12.73 8.13 -89.69 -0.73 12.00 16 33 H 0.03 1.01 7.89 -2.39 -0.02 0.99 16 34 H 0.08 2.43 7.56 -2.38 -0.02 2.41 16 35 H 0.18 4.36 8.06 -2.91 -0.02 4.34 16 36 H 0.16 3.37 8.06 -2.91 -0.02 3.34 16 37 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -63.69 348.74 2.31 -61.38 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.29 Total: 19.32 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: 6.59 Total: -7.91 kcal Atomic # 7 Polarization: -110.63 SS G_CDS: -6.60 Total: -117.23 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Total: -63.69 2.31 -61.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107912645.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.584 kcal (2) G-P(sol) polarization free energy of solvation -63.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds