Wall clock time and date at job start Fri Apr 10 2020 19:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46904 * 110.99870 * 2 1 4 4 C 1.50697 * 109.46891 * 293.95675 * 3 2 1 5 5 H 1.07991 * 120.00449 * 359.72239 * 4 3 2 6 6 C 1.37885 * 119.99686 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 3 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 3 9 9 H 1.48498 * 109.47416 * 59.99812 * 8 6 4 10 10 H 1.48508 * 109.46609 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46903 * 299.99397 * 8 6 4 12 12 C 1.38516 * 110.99951 * 123.95289 * 2 1 3 13 13 N 1.31921 * 120.28172 * 236.04670 * 12 2 1 14 14 C 1.33717 * 121.15202 * 179.97438 * 13 12 2 15 15 C 1.34727 * 121.47760 * 0.02562 * 14 13 12 16 16 N 1.37115 * 119.93653 * 359.97438 * 15 14 13 17 17 N 1.39753 * 133.54719 * 180.02562 * 16 15 14 18 18 C 1.31596 * 108.82702 * 179.97438 * 17 16 15 19 19 C 1.50704 * 125.51336 * 180.02562 * 18 17 16 20 20 C 1.53005 * 109.46634 * 254.97538 * 19 18 17 21 21 C 1.52997 * 109.46996 * 14.97349 * 19 18 17 22 22 C 1.52998 * 109.47141 * 134.97605 * 19 18 17 23 23 C 1.38622 * 108.97659 * 359.97438 * 18 17 16 24 24 C 1.37251 * 118.92687 * 359.73426 * 16 15 14 25 25 H 1.08997 * 109.47233 * 59.99809 * 1 2 3 26 26 H 1.08998 * 109.46536 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46977 * 299.99485 * 1 2 3 28 28 H 1.08998 * 109.47046 * 173.95176 * 3 2 1 29 29 H 1.09001 * 109.47014 * 53.95377 * 3 2 1 30 30 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 31 31 H 1.07995 * 119.26564 * 179.97438 * 14 13 12 32 32 H 1.07997 * 120.03570 * 179.97438 * 15 14 13 33 33 H 1.08997 * 109.47344 * 60.00089 * 20 19 18 34 34 H 1.09004 * 109.46619 * 180.02562 * 20 19 18 35 35 H 1.08999 * 109.47452 * 299.99362 * 20 19 18 36 36 H 1.08997 * 109.46837 * 60.00643 * 21 19 18 37 37 H 1.09003 * 109.46875 * 180.02562 * 21 19 18 38 38 H 1.08997 * 109.47301 * 300.00107 * 21 19 18 39 39 H 1.09006 * 109.47393 * 59.99932 * 22 19 18 40 40 H 1.09003 * 109.46799 * 179.97438 * 22 19 18 41 41 H 1.08997 * 109.47571 * 299.99895 * 22 19 18 42 42 H 1.07997 * 126.20227 * 179.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0781 1.5100 -2.0504 6 6 2.0276 3.3492 -1.5289 7 7 2.7085 4.0033 -0.6133 8 14 1.5897 4.1842 -3.1414 9 1 0.1132 4.2201 -3.2954 10 1 2.1219 5.5706 -3.1413 11 1 2.1868 3.4255 -4.2698 12 6 1.9654 -0.7222 1.0727 13 7 2.7978 -0.1579 1.9265 14 6 3.2872 -0.8386 2.9682 15 6 2.9520 -2.1249 3.1881 16 7 2.0905 -2.7633 2.3334 17 7 1.5609 -4.0558 2.2880 18 6 0.7686 -4.1535 1.2419 19 6 0.0017 -5.3859 0.8365 20 6 0.6800 -6.0339 -0.3722 21 6 -0.0214 -6.3780 2.0010 22 6 -1.4317 -4.9969 0.4693 23 6 0.7524 -2.9391 0.5736 24 6 1.5793 -2.0693 1.2653 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 3.0797 1.3445 0.1083 29 1 1.5611 1.9274 0.8309 30 1 2.9830 4.9194 -0.7753 31 1 3.9669 -0.3467 3.6480 32 1 3.3614 -2.6527 4.0367 33 1 1.7012 -6.3110 -0.1106 34 1 0.1251 -6.9251 -0.6657 35 1 0.6965 -5.3271 -1.2018 36 1 -0.5046 -5.9163 2.8620 37 1 -0.5757 -7.2696 1.7077 38 1 0.9997 -6.6552 2.2626 39 1 -1.4152 -4.2900 -0.3603 40 1 -1.9861 -5.8883 0.1757 41 1 -1.9149 -4.5352 1.3304 42 1 0.1938 -2.7113 -0.3222 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128953662.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:51 Heat of formation + Delta-G solvation = 120.596606 kcal Electronic energy + Delta-G solvation = -23007.512133 eV Core-core repulsion = 19796.908525 eV Total energy + Delta-G solvation = -3210.603608 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.165 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.08156 -38.85249 -37.14475 -35.90930 -32.86954 -31.83472 -30.50700 -28.88728 -27.55622 -27.35505 -27.05106 -25.65157 -23.53027 -23.24614 -21.74395 -20.87713 -18.85882 -17.88114 -16.67968 -16.33454 -15.72914 -15.37964 -15.14959 -14.87640 -14.52184 -14.33242 -13.95126 -13.79228 -13.69542 -13.38378 -12.64041 -12.50647 -12.27338 -12.05375 -12.03441 -11.75915 -11.54797 -11.34745 -11.22187 -11.14001 -11.05184 -10.83503 -10.71675 -10.46160 -10.33132 -10.11672 -9.45698 -9.32832 -9.18892 -8.53994 -8.20472 -7.08510 -6.07945 -4.12126 0.99140 1.32884 2.32178 2.78163 3.30285 3.34977 3.36942 3.74494 4.03532 4.32435 4.42316 4.53173 4.69081 4.84980 4.87672 5.04623 5.24598 5.28030 5.35285 5.50853 5.51715 5.65107 5.68021 5.70033 5.72266 5.78787 5.82276 5.89901 5.97594 5.99078 6.06967 6.20093 6.21128 6.30765 6.44516 6.66956 6.89225 7.01629 7.26945 7.58138 7.70577 7.74817 7.99556 8.26579 8.38191 8.93712 9.51596 11.02251 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.021221 B = 0.004231 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.146211 B = 6615.471600 C = 7637.637360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.460 5.460 3 C 0.202 3.798 4 C -0.525 4.525 5 H 0.064 0.936 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.384 3.616 13 N -0.507 5.507 14 C 0.072 3.928 15 C -0.013 4.013 16 N -0.247 5.247 17 N -0.304 5.304 18 C 0.094 3.906 19 C 0.014 3.986 20 C -0.138 4.138 21 C -0.135 4.135 22 C -0.139 4.139 23 C -0.238 4.238 24 C 0.046 3.954 25 H 0.093 0.907 26 H 0.066 0.934 27 H 0.033 0.967 28 H 0.050 0.950 29 H 0.014 0.986 30 H 0.264 0.736 31 H 0.175 0.825 32 H 0.166 0.834 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.459 -17.163 4.994 18.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.175 5.175 3 C 0.079 3.921 4 C -0.563 4.563 5 H 0.082 0.918 6 C -0.142 4.142 7 N -0.528 5.528 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.201 1.201 12 C 0.129 3.871 13 N -0.227 5.227 14 C -0.070 4.070 15 C -0.140 4.140 16 N -0.016 5.016 17 N -0.131 5.131 18 C -0.061 4.061 19 C 0.012 3.988 20 C -0.196 4.196 21 C -0.193 4.193 22 C -0.197 4.197 23 C -0.270 4.270 24 C -0.079 4.079 25 H 0.112 0.888 26 H 0.085 0.915 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.032 0.968 30 H 0.073 0.927 31 H 0.192 0.808 32 H 0.184 0.816 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.424 -17.007 5.611 18.447 hybrid contribution -0.576 0.572 -0.691 1.066 sum -5.000 -16.435 4.921 17.870 Atomic orbital electron populations 1.22501 0.83932 1.01732 1.02982 1.58775 1.08864 1.19829 1.30016 1.19855 0.97210 0.77846 0.97171 1.21104 1.36326 0.97352 1.01533 0.91754 1.24951 0.95001 0.97167 0.97041 1.69970 1.37522 1.11463 1.33859 0.86533 0.78723 0.78401 0.83594 1.20151 1.21250 1.20108 1.20116 0.91553 0.87802 0.87617 1.68609 1.15048 1.35804 1.03275 1.22079 0.99225 0.89590 0.96117 1.22055 0.98661 0.94969 0.98345 1.46134 1.28901 1.08908 1.17684 1.77698 1.18680 0.93372 1.23374 1.22068 0.95781 0.95767 0.92508 1.19018 0.93951 0.89678 0.96120 1.21869 1.00502 1.00487 0.96712 1.21786 1.02455 0.97911 0.97143 1.21884 0.93931 1.01764 1.02088 1.21157 1.08605 0.92003 1.05272 1.20016 1.01007 0.94180 0.92714 0.88800 0.91504 0.94795 0.93151 0.96772 0.92676 0.80761 0.81642 0.92481 0.91814 0.91835 0.92483 0.92380 0.92059 0.91723 0.91834 0.92347 0.82432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 9.09 60.07 0.55 1.18 16 2 N -0.46 -10.02 4.78 -181.95 -0.87 -10.89 16 3 C 0.20 5.25 3.99 -4.98 -0.02 5.23 16 4 C -0.52 -14.31 8.51 -34.44 -0.29 -14.60 16 5 H 0.06 1.69 7.11 -52.49 -0.37 1.32 16 6 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 7 N -0.89 -26.05 13.29 55.43 0.74 -25.32 16 8 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 C 0.38 7.87 6.44 -155.01 -1.00 6.87 16 13 N -0.51 -10.38 8.74 -12.47 -0.11 -10.49 16 14 C 0.07 1.14 11.05 -17.97 -0.20 0.95 16 15 C -0.01 -0.20 11.25 -16.43 -0.18 -0.38 16 16 N -0.25 -4.25 3.97 -10.52 -0.04 -4.29 16 17 N -0.30 -4.97 11.96 33.55 0.40 -4.57 16 18 C 0.09 1.38 5.62 -82.55 -0.46 0.92 16 19 C 0.01 0.16 0.96 -155.66 -0.15 0.01 16 20 C -0.14 -1.35 8.46 37.16 0.31 -1.03 16 21 C -0.14 -1.36 8.02 37.16 0.30 -1.06 16 22 C -0.14 -1.28 8.19 37.16 0.30 -0.98 16 23 C -0.24 -3.78 8.78 -39.34 -0.35 -4.13 16 24 C 0.05 0.84 6.40 -84.11 -0.54 0.31 16 25 H 0.09 1.73 6.86 -51.93 -0.36 1.38 16 26 H 0.07 1.03 4.91 -51.93 -0.25 0.78 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 1.44 7.53 -51.93 -0.39 1.05 16 29 H 0.01 0.40 8.12 -51.93 -0.42 -0.02 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.18 2.09 8.06 -52.49 -0.42 1.67 16 32 H 0.17 1.84 8.06 -52.49 -0.42 1.42 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.67 8.07 -51.93 -0.42 0.25 16 39 H 0.06 0.59 7.48 -51.93 -0.39 0.20 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.16 2.25 6.36 -52.49 -0.33 1.92 16 LS Contribution 341.81 15.07 5.15 5.15 Total: -1.00 -31.78 341.81 -7.88 -39.66 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -6.30 Total: -0.18 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -1.83 Total: -5.12 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: 0.12 Total: -55.56 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.78 -7.88 -39.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128953662.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.259 kcal (2) G-P(sol) polarization free energy of solvation -31.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds