Wall clock time and date at job start Fri Apr 10 2020 19:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46904 * 110.99870 * 2 1 4 4 C 1.50697 * 109.46891 * 293.95675 * 3 2 1 5 5 H 1.07991 * 120.00449 * 359.72239 * 4 3 2 6 6 C 1.37885 * 119.99686 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 3 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 3 9 9 H 1.48498 * 109.47416 * 59.99812 * 8 6 4 10 10 H 1.48508 * 109.46609 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46903 * 299.99397 * 8 6 4 12 12 C 1.38516 * 110.99951 * 123.95289 * 2 1 3 13 13 N 1.31921 * 120.28172 * 236.04670 * 12 2 1 14 14 C 1.33717 * 121.15202 * 179.97438 * 13 12 2 15 15 C 1.34727 * 121.47760 * 0.02562 * 14 13 12 16 16 N 1.37115 * 119.93653 * 359.97438 * 15 14 13 17 17 N 1.39753 * 133.54719 * 180.02562 * 16 15 14 18 18 C 1.31596 * 108.82702 * 179.97438 * 17 16 15 19 19 C 1.50704 * 125.51336 * 180.02562 * 18 17 16 20 20 C 1.53005 * 109.46634 * 254.97538 * 19 18 17 21 21 C 1.52997 * 109.46996 * 14.97349 * 19 18 17 22 22 C 1.52998 * 109.47141 * 134.97605 * 19 18 17 23 23 C 1.38622 * 108.97659 * 359.97438 * 18 17 16 24 24 C 1.37251 * 118.92687 * 359.73426 * 16 15 14 25 25 H 1.08997 * 109.47233 * 59.99809 * 1 2 3 26 26 H 1.08998 * 109.46536 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46977 * 299.99485 * 1 2 3 28 28 H 1.08998 * 109.47046 * 173.95176 * 3 2 1 29 29 H 1.09001 * 109.47014 * 53.95377 * 3 2 1 30 30 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 31 31 H 1.07995 * 119.26564 * 179.97438 * 14 13 12 32 32 H 1.07997 * 120.03570 * 179.97438 * 15 14 13 33 33 H 1.08997 * 109.47344 * 60.00089 * 20 19 18 34 34 H 1.09004 * 109.46619 * 180.02562 * 20 19 18 35 35 H 1.08999 * 109.47452 * 299.99362 * 20 19 18 36 36 H 1.08997 * 109.46837 * 60.00643 * 21 19 18 37 37 H 1.09003 * 109.46875 * 180.02562 * 21 19 18 38 38 H 1.08997 * 109.47301 * 300.00107 * 21 19 18 39 39 H 1.09006 * 109.47393 * 59.99932 * 22 19 18 40 40 H 1.09003 * 109.46799 * 179.97438 * 22 19 18 41 41 H 1.08997 * 109.47571 * 299.99895 * 22 19 18 42 42 H 1.07997 * 126.20227 * 179.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0781 1.5100 -2.0504 6 6 2.0276 3.3492 -1.5289 7 7 2.7085 4.0033 -0.6133 8 14 1.5897 4.1842 -3.1414 9 1 0.1132 4.2201 -3.2954 10 1 2.1219 5.5706 -3.1413 11 1 2.1868 3.4255 -4.2698 12 6 1.9654 -0.7222 1.0727 13 7 2.7978 -0.1579 1.9265 14 6 3.2872 -0.8386 2.9682 15 6 2.9520 -2.1249 3.1881 16 7 2.0905 -2.7633 2.3334 17 7 1.5609 -4.0558 2.2880 18 6 0.7686 -4.1535 1.2419 19 6 0.0017 -5.3859 0.8365 20 6 0.6800 -6.0339 -0.3722 21 6 -0.0214 -6.3780 2.0010 22 6 -1.4317 -4.9969 0.4693 23 6 0.7524 -2.9391 0.5736 24 6 1.5793 -2.0693 1.2653 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 3.0797 1.3445 0.1083 29 1 1.5611 1.9274 0.8309 30 1 2.9830 4.9194 -0.7753 31 1 3.9669 -0.3467 3.6480 32 1 3.3614 -2.6527 4.0367 33 1 1.7012 -6.3110 -0.1106 34 1 0.1251 -6.9251 -0.6657 35 1 0.6965 -5.3271 -1.2018 36 1 -0.5046 -5.9163 2.8620 37 1 -0.5757 -7.2696 1.7077 38 1 0.9997 -6.6552 2.2626 39 1 -1.4152 -4.2900 -0.3603 40 1 -1.9861 -5.8883 0.1757 41 1 -1.9149 -4.5352 1.3304 42 1 0.1938 -2.7113 -0.3222 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128953662.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:50 Heat of formation + Delta-G solvation = 101.150235 kcal Electronic energy + Delta-G solvation = -23008.355391 eV Core-core repulsion = 19796.908525 eV Total energy + Delta-G solvation = -3211.446866 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.165 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.38058 -40.19262 -38.48777 -37.06480 -34.86853 -33.26523 -31.88817 -30.16261 -29.31786 -28.09223 -28.03079 -27.16911 -25.24384 -24.44318 -23.14188 -22.39052 -19.98293 -19.28025 -18.48405 -17.80865 -17.08886 -16.83072 -16.59392 -16.32994 -15.90353 -15.61923 -15.08430 -15.00122 -14.82671 -14.71278 -14.12345 -13.78677 -13.68001 -13.29895 -13.05182 -12.98122 -12.88723 -12.65085 -12.52824 -12.47948 -12.27245 -12.14212 -12.06778 -12.01163 -11.71676 -11.48120 -11.34925 -10.74239 -10.61180 -10.58882 -9.84886 -8.46633 -8.19909 -6.32892 -0.37021 0.00660 1.08049 1.44106 1.47791 1.55424 1.59387 2.33369 2.41648 2.67299 3.13022 3.17154 3.31836 3.48444 3.78563 3.97370 4.07956 4.18957 4.26246 4.35841 4.39688 4.47863 4.53711 4.73033 4.81914 4.84114 4.92386 4.93453 4.96946 5.05324 5.06119 5.10517 5.14868 5.26004 5.28526 5.43756 5.46362 5.49840 5.59267 5.69582 5.85229 5.94279 6.36498 6.48192 6.75160 6.95916 7.36529 8.90991 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.021221 B = 0.004231 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.146211 B = 6615.471600 C = 7637.637360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.470 5.470 3 C 0.228 3.772 4 C -0.538 4.538 5 H 0.073 0.927 6 C 0.006 3.994 7 N -0.930 5.930 8 Si 0.974 3.026 9 H -0.262 1.262 10 H -0.285 1.285 11 H -0.268 1.268 12 C 0.356 3.644 13 N -0.542 5.542 14 C 0.049 3.951 15 C 0.011 3.989 16 N -0.262 5.262 17 N -0.313 5.313 18 C 0.103 3.897 19 C 0.012 3.988 20 C -0.135 4.135 21 C -0.132 4.132 22 C -0.137 4.137 23 C -0.239 4.239 24 C 0.029 3.971 25 H 0.090 0.910 26 H 0.097 0.903 27 H 0.024 0.976 28 H 0.013 0.987 29 H -0.020 1.020 30 H 0.265 0.735 31 H 0.208 0.792 32 H 0.208 0.792 33 H 0.045 0.955 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.047 0.953 37 H 0.085 0.915 38 H 0.049 0.951 39 H 0.064 0.936 40 H 0.089 0.911 41 H 0.051 0.949 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.722 -19.457 4.338 21.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.186 5.186 3 C 0.103 3.897 4 C -0.576 4.576 5 H 0.091 0.909 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.797 3.203 9 H -0.186 1.186 10 H -0.210 1.210 11 H -0.193 1.193 12 C 0.102 3.898 13 N -0.262 5.262 14 C -0.092 4.092 15 C -0.116 4.116 16 N -0.032 5.032 17 N -0.140 5.140 18 C -0.053 4.053 19 C 0.010 3.990 20 C -0.193 4.193 21 C -0.189 4.189 22 C -0.195 4.195 23 C -0.271 4.271 24 C -0.096 4.096 25 H 0.109 0.891 26 H 0.115 0.885 27 H 0.042 0.958 28 H 0.031 0.969 29 H -0.003 1.003 30 H 0.074 0.926 31 H 0.225 0.775 32 H 0.225 0.775 33 H 0.064 0.936 34 H 0.110 0.890 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.103 0.897 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.108 0.892 41 H 0.070 0.930 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -5.690 -19.339 4.980 20.765 hybrid contribution -0.154 1.121 -0.329 1.179 sum -5.844 -18.218 4.650 19.689 Atomic orbital electron populations 1.22542 0.82448 1.03460 1.02289 1.58779 1.10369 1.17358 1.32074 1.19257 0.94696 0.80130 0.95598 1.21461 1.36218 0.97849 1.02047 0.90919 1.25933 0.94660 0.97893 1.00825 1.70122 1.38779 1.11848 1.36192 0.85376 0.79122 0.77012 0.78754 1.18616 1.21047 1.19330 1.20083 0.92756 0.88714 0.88251 1.68481 1.15111 1.38033 1.04581 1.22605 1.00407 0.90414 0.95754 1.22737 0.96209 0.94535 0.98069 1.46492 1.29547 1.09236 1.17924 1.77699 1.19169 0.92878 1.24235 1.22754 0.94714 0.96629 0.91226 1.19277 0.94517 0.88295 0.96931 1.21872 1.00183 1.01416 0.95868 1.21768 1.02087 0.98624 0.96458 1.21899 0.92768 1.02993 1.01836 1.21417 1.08125 0.92042 1.05531 1.19978 1.02113 0.93567 0.93911 0.89106 0.88479 0.95769 0.96924 1.00263 0.92592 0.77528 0.77502 0.93622 0.89037 0.92213 0.93363 0.89663 0.93214 0.91674 0.89243 0.93010 0.81075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.42 9.09 127.69 1.16 2.58 16 2 N -0.47 -21.29 4.78 -729.57 -3.48 -24.77 16 3 C 0.23 12.52 3.99 85.56 0.34 12.86 16 4 C -0.54 -30.13 8.51 25.60 0.22 -29.92 16 5 H 0.07 3.86 7.11 -2.92 -0.02 3.84 16 6 C 0.01 0.33 5.46 84.66 0.46 0.79 16 7 N -0.93 -56.26 13.29 21.45 0.28 -55.97 16 8 Si 0.97 43.45 29.54 68.60 2.03 45.48 16 9 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 12 C 0.36 15.11 6.44 133.95 0.86 15.97 16 13 N -0.54 -23.13 8.74 -193.37 -1.69 -24.82 16 14 C 0.05 1.56 11.05 83.60 0.92 2.48 16 15 C 0.01 0.31 11.25 83.06 0.93 1.24 16 16 N -0.26 -8.79 3.97 -187.21 -0.74 -9.53 16 17 N -0.31 -9.78 11.96 -47.78 -0.57 -10.35 16 18 C 0.10 2.84 5.62 42.69 0.24 3.08 16 19 C 0.01 0.23 0.96 -52.93 -0.05 0.18 16 20 C -0.14 -2.26 8.46 71.98 0.61 -1.66 16 21 C -0.13 -2.29 8.02 71.98 0.58 -1.71 16 22 C -0.14 -2.11 8.19 71.98 0.59 -1.52 16 23 C -0.24 -7.34 8.78 22.43 0.20 -7.15 16 24 C 0.03 1.04 6.40 39.15 0.25 1.29 16 25 H 0.09 3.40 6.86 -2.39 -0.02 3.38 16 26 H 0.10 2.97 4.91 -2.39 -0.01 2.96 16 27 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.01 0.77 7.53 -2.39 -0.02 0.76 16 29 H -0.02 -1.23 8.12 -2.39 -0.02 -1.25 16 30 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 31 H 0.21 4.82 8.06 -2.91 -0.02 4.79 16 32 H 0.21 3.95 8.06 -2.91 -0.02 3.93 16 33 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.05 0.97 8.07 -2.39 -0.02 0.95 16 39 H 0.06 1.00 7.48 -2.38 -0.02 0.98 16 40 H 0.09 0.93 8.14 -2.39 -0.02 0.92 16 41 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.17 4.64 6.36 -2.91 -0.02 4.62 16 Total: -1.00 -71.87 341.81 4.14 -67.72 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 1.01 Total: 13.71 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: 7.31 Total: -1.46 kcal Atomic # 7 Polarization: -119.24 SS G_CDS: -6.20 Total: -125.45 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -71.87 4.14 -67.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128953662.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.872 kcal (2) G-P(sol) polarization free energy of solvation -71.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds